Photo
by George Howard
Right Eye Photography
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Dr.
Vicki L. Chandler
Carl E. and Patricia Weiler Endowed Chair for Excellence in Agriculture
and Life Sciences Regents' Professor,
Dept. of Plant Sciences and Molecular & Cellular Biology &
Director
of The BIO5 Institute
Keating Building, Room 102, 303
1657 N. Helen St.
Phone: (520) 626-4272
Email: chandler@ag.arizona.edu
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Visit
these web-sites to learn more about Dr. Chandler and her research
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| Background
and Interests |
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| Vicki
Chandler received a Ph.D. in Biochemistry from the University of
California, San Francisco. She also has a Bachelor's degree
in Biochemistry, which she received from the University of California,
Berkeley. Here at the University of Arizona she teaches Advanced
Genetics and Concepts in Genetics. She has also been a guest
lecturer for a number of courses, including Methods in Cell Biology
and Genomics, Biology 181 honors, and Women in Sciences. In 2001
Dr. Chandler received the College of Agriculture and Life Sciences
Faculty Researchers of the Year Award and in 2002 she was elected
to the National Academy of Sciences.
Her
research program investigates the regulation of gene expression.
The anthocyanin biosynthetic pathway in maize is the focus of their
work, as it provides an exceptionally tractable system for genetic,
biochemical and molecular approaches. A major emphasis in their
research is to investigate how the regulatory genes of this pathway
are controlled. These regulatory genes, which encode transcription
factors that activate the anthocyanin biosynthetic genes, have multiple
alleles that produce distinct developmental and tissue-specific
patterns of anthocyanin pigments. In addition, they have identified
negatively acting modifier genes that reduce the expression of the
biosynthetic and regulatory genes. Identifying the cis-acting sequences
regulating differential expression, and factors that interact with
these sequences should provide important information on mechanisms
of gene regulation, applicable to numerous plant systems. In addition,
the availability of regulatory sequences that can control expression
in distinct tissues and developmental stages will greatly enhance
the potential of genetic engineering. They are also using this system
to investigate mechanisms of gene silencing, which has a fundamental
role in development of all organisms and has recently become a major
problem with genetic engineering approaches to crop improvement.
They use both forward and reverse genetic approaches to study paramutation,
the regulation of transposable elements and transgene silencing.
Paramutation is a mitotically and meiotically heritable change in
gene expression that is induced by allele interactions. They have
demonstrated that the heritable change is accompanied by a ten-
to twenty-fold reduction in transcription. Recently they have used
a combination of classical genetics, genomics, and molecular methods
to identify and characterize the minimal sequences required for
paramutation, which map within 99-106 kbp upstream of the transcription
initiation site. They have also identified multiple mutations in
other genes required for the establishment and maintenance of paramutation.
They have shown that these mutants also activate previously silent
transposable elements and transgenes, indicating that the wild type
proteins are required for multiple gene-silencing processes. Experiments
are in progress to clone the genes represented by these mutations
and determine their role in gene silencing. As heritable changes
in chromatin structure are clearly involved in the establishment
and maintenance of distinct transcription states they are also pursuing
a functional genomics approach to understand chromatin-level control
of gene expression in both maize and Arabidopsis. |
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| Publications |
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Chandler, V. and Alleman, M.. Apr 2008. Paramutation: epigenetic instructions passed across generations. Genetics, 178(4):1839-1844
Stupar, R.M., Gardiner, J.M., Oldre, A.G., Haun, W.J., Chandler, V.L., and Springer, N.M.. Apr 2008. Gene expression analyses in maize inbreds and hybrids with varying levels of heterosis. BMC Plant Biol, 8(1):33
Chandler VL. Feb 2007. Paramutation: From Maize to Mice. Cell, 128:641-645
Alleman M, Sidorenko L, McGinnis K, Seshadri V, Dorweiler JE, White J, Sikkink K, Chandler VL. Jul 2006. An RNA-dependent RNA polymerase is required for paramutation in maize. Nature, 442:295-8
McGinnis KM, Springer C, Lin Y, Carey CC, Chandler V. Jul 2006. Transcriptionally silenced transgenes in maize are activated by three mutations defective in paramutation. Genetics, 173:1637-47
McGinnis K, Chandler V, Cone K, Kaeppler H, Kaeppler S, Kerschen A, Pikaard C, Richards E, Sidorenko L, Smith T, Springer N, Wulan T. Jan 2005. Transgene-induced RNA interference as a tool for plant functional genomics. Methods Enzymol, 392:1-24
Chandler VL, Stam M. Jul 2004. Chromatin conversations: mechanisms and implications of paramutation. Nat Rev Genet, 5:532-44
Carey CC, Strahle JT, Selinger DA, Chandler VL. Feb 2004. Mutations in the pale aleurone color1 regulatory gene of the Zea mays anthocyanin pathway have distinct phenotypes relative to the functionally similar TRANSPARENT TESTA GLABRA1 gene in Arabidopsis thaliana. Plant Cell, 16:450-64
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