Jorgensen R.A., N. Doetsch, A.E. Müller, Q. Que, K. Gendler, and C.A. Napoli.. A Paragenetic Perspective on Integration of RNA Silencing into the Epigenome and Its Role in the Biology of Higher Plants. Cold Spring Harbor Symp. Quant. Biol.,, in press.
Müller, A.E., Atkinson, R.G., Sandoval, R.G., and R.A. Jorgensen. Analysis of sequence similarity and filler DNA at T-DNA insertion loci in Arabidopsis thaliana suggests an inverted invasion pathway for T-DNA integration. Plant Cell Reports,, in press.
Tuskan GA, et al.. Sep 2006. The genome of black cottonwood, Populus trichocarpa (Torr. & Gray). Science, 313:1596-1604
Hayden CA, Wheeler TJ, Jorgensen RA. Dec 2005. Evaluating and improving cDNA sequence quality with cQC. Bioinformatics, 21:4414-5
Kerschen A, Napoli CA, Jorgensen RA, Muller AE. May 2004. Effectiveness of RNA interference in transgenic plants. FEBS Lett, 566:223-8
Jorgensen RA. 2004. Sense Cosuppression: Past, Present, and Future. Ed. by G. Hannon. RNA Interference. Cold Spring Harbor Press.
Jorgensen RA. Jan 2004. Restructuring the genome in response to adaptive challenge: McClintock's bold conjecture revisited. Cold Spring Harb Symp Quant Biol, 69:349-54
Pandey R, Muller A, Napoli CA, Selinger DA, Pikaard CS, Richards EJ, Bender J, Mount DW, Jorgensen RA. Dec 2002. Analysis of histone acetyltransferase and histone deacetylase families of Arabidopsis thaliana suggests functional diversification of chromatin modification among multicellular eukaryotes. Nucleic Acids Res, 30:5036-55
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