ATF 1.0 51 5 "Type=GenePix arrayList V1.0" "BlockCount=48" "BlockType = 0" "Block1= 500 500 100 25 170 26 165" "Block2= 5000 500 100 25 170 26 165" "Block3= 9500 500 100 25 170 26 165" "Block4= 14000 500 100 25 170 26 165" "Block5= 500 5000 100 25 170 26 165" "Block6= 5000 5000 100 25 170 26 165" "Block7= 9500 5000 100 25 170 26 165" "Block8= 14000 5000 100 25 170 26 165" "Block9= 500 9500 100 25 170 26 165" "Block10= 5000 9500 100 25 170 26 165" "Block11= 9500 9500 100 25 170 26 165" "Block12= 14000 9500 100 25 170 26 165" "Block13= 500 14000 100 25 170 26 165" "Block14= 5000 14000 100 25 170 26 165" "Block15= 9500 14000 100 25 170 26 165" "Block16= 14000 14000 100 25 170 26 165" "Block17= 500 18500 100 25 170 26 165" "Block18= 5000 18500 100 25 170 26 165" "Block19= 9500 18500 100 25 170 26 165" "Block20= 14000 18500 100 25 170 26 165" "Block21= 500 23000 100 25 170 26 165" "Block22= 5000 23000 100 25 170 26 165" "Block23= 9500 23000 100 25 170 26 165" "Block24= 14000 23000 100 25 170 26 165" "Block25= 500 27500 100 25 170 26 165" "Block26= 5000 27500 100 25 170 26 165" "Block27= 9500 27500 100 25 170 26 165" "Block28= 14000 27500 100 25 170 26 165" "Block29= 500 32000 100 25 170 26 165" "Block30= 5000 32000 100 25 170 26 165" "Block31= 9500 32000 100 25 170 26 165" "Block32= 14000 32000 100 25 170 26 165" "Block33= 500 36500 100 25 170 26 165" "Block34= 5000 36500 100 25 170 26 165" "Block35= 9500 36500 100 25 170 26 165" "Block36= 14000 36500 100 25 170 26 165" "Block37= 500 41000 100 25 170 26 165" "Block38= 5000 41000 100 25 170 26 165" "Block39= 9500 41000 100 25 170 26 165" "Block40= 14000 41000 100 25 170 26 165" "Block41= 500 45500 100 25 170 26 165" "Block42= 5000 45500 100 25 170 26 165" "Block43= 9500 45500 100 25 170 26 165" "Block44= 14000 45500 100 25 170 26 165" "Block45= 500 50000 100 25 170 26 165" "Block46= 5000 50000 100 25 170 26 165" "Block47= 9500 50000 100 25 170 26 165" "Block48= 14000 50000 100 25 170 26 165" "Block" "Row" "Column" "ID" "Name" 1 1 1 At5g49910 heat shock protein 70 / HSP70 (HSC70-7) identical to heat shock protein 70 [Arabidopsis thaliana] GI:6746592 1 1 2 At3g18780 actin 2 (ACT2) identical to SP|Q96292 Actin 2 {Arabidopsis thaliana}; nearly identical to SP|Q96293 Actin 8 [Arabidopsis thaliana] GI:1669387 and to At1g49240 1 1 3 Alien5 Control: Stratagene Spotreport Alien Oligo 1 1 4 At1g64740 tubulin alpha-1 chain (TUA1) nearly identical to SP|P11139 Tubulin alpha-1 chain {Arabidopsis thaliana} 1 1 5 atc07 Randomly generated negative control 1 1 6 Alien1 Control: Stratagene Spotreport Alien Oligo 1 1 7 At3g18780 actin 2 (ACT2) identical to SP|Q96292 Actin 2 {Arabidopsis thaliana}; nearly identical to SP|Q96293 Actin 8 [Arabidopsis thaliana] GI:1669387 and to At1g49240 1 1 8 atc03 Randomly generated negative control 1 1 9 At1g01950 "armadillo/beta-catenin repeat family protein / kinesin motor family protein similar to kinesin-like protein GB:CAB41097 GI:5541717 from [Arabidopsis thaliana]; contains Pfam profiles PF00225: Kinesin motor domain, PF00514: Armadillo/beta-catenin-like repeat" 1 1 10 At1g02010 "cytokinesis-related Sec1 protein, putative similar to cytokinesis-related Sec1 protein KEULE [Arabidopsis thaliana] gi|12659318|gb|AAK01291; contains Pfam domain, PF00995: Sec1 family; non-consensus GC donor splice site at exon boundary 46833" 1 1 11 At1g02100 leucine carboxyl methyltransferase family protein contains Pfam PF04072: Leucine carboxyl methyltransferase domain; similar to Leucine carboxyl methyltransferase (Protein-leucine O- methyltransferase) (CGI-68) (SP:Q9UIC8) {Homo sapiens} 1 1 12 At1g02150 pentatricopeptide (PPR) repeat-containing protein low similiarity to DNA-binding protein [Triticum aestivum] GI:6958202; contains Pfam profile: PF01535 PPR repeat 1 1 13 At1g02305 "cathepsin B-like cysteine protease, putative similar to cathepsin B-like cysteine proteinase [Nicotiana rustica] GI:609175; contains Pfam profile PF00112: Papain family cysteine protease" 1 1 14 At1g02360 "chitinase, putative similar to chitinase precursor GI:5880845 from [Petroselinum crispum]" 1 1 15 At1g02530 "multidrug resistance P-glycoprotein, putative similar to multidrug-resistant protein CjMDR1 GI:14715462 from [Coptis japonica]" 1 1 16 At1g02590 "aldehyde oxidase, putative similar to aldehyde oxidase GB:BAA28630 GI:3172044 from [Arabidopsis thaliana]" 1 1 17 At1g05200 "glutamate receptor family protein (GLR3.4) plant glutamate receptor family, PMID:11379626" 1 1 18 At1g05250 "peroxidase, putative similar to peroxidase; peroxidase ATP11a [Arabidopsis thaliana] gi|1546688|emb|CAA67334" 1 1 19 At1g05420 ovate protein-related contains TIGRFAM TIGR01568 : uncharacterized plant-specific domain TIGR01568 1 1 20 At1g05460 RNA helicase SDE3 (SDE3) identical to RNA helicase SDE3 [Arabidopsis thaliana] GI:13811296 1 1 21 At1g05615 hypothetical protein 1 1 22 At1g05670 "UDP-glucoronosyl/UDP-glucosyl transferase family protein similar to UDP-glucose:salicylic acid glucosyltransferase [Nicotiana tabacum] GI:7385017; contains Pfam profiles PF00201: UDP-glucoronosyl and UDP-glucosyl transferase, PF01535: PPR repeat" 1 1 23 At1g05800 lipase class 3 family protein similar to DEFECTIVE IN ANTHER DEHISCENCE1 [Arabidopsis thaliana] GI:16215706; contains Pfam profile PF01764: Lipase 1 1 24 At1g05850 chitinase-like protein 1 (CTL1) similar to class I chitinase GI:7798656 from [Halimolobos perplexa var. perplexa]; contains Pfam profile PF00182: Chitinase class I; identical to cDNA chitinase-like protein 1 (CTL1) CTL1-ELP1 allele GI:17226328 1 1 25 At1g08340 "rac GTPase activating protein, putative similar to rac GTPase activating protein 1 GI:3695059 from [Lotus japonicus]; contains Pfam profile PF00620: RhoGAP domain" 1 2 1 At1g08400 chromosome structural maintenance protein-related contains weak similarity to RAD50-interacting protein 1 [Homo sapiens] gi|11967435|gb|AAG42101 1 2 2 At1g08570 "thioredoxin family protein contains Pfam profile: PF00085 Thioredoxin; similar to ESTs gb|T46281, gb|R83933, gb|N65879, emb|F14466, gb|N96726, gb|AA042340, and emb|Z18150" 1 2 3 At1g08630 "L-allo-threonine aldolase-related similar to L-allo-threonine aldolase (EC 4.1.2.-) (L-allo-TA) (L-allo-threonine acetaldehyde-lyase) (SP:O07051) {Aeromonas jandaei}; similar to ESTs gb|R30517, gb|T42772, gb|R90493, and gb|R90493" 1 2 4 At1g08750 "GPI-anchor transamidase, putative similar to SP|P49018 GPI-anchor transamidase (EC 3.-.-.-) (GPI transamidase) {Saccharomyces cerevisiae}; contains Pfam profile PF01650: Peptidase C13 family" 1 2 5 At1g08810 myb family transcription factor (MYB60) 1 2 6 At1g08970 "CCAAT-box binding transcription factor Hap5a, putative " 1 2 7 At1g09020 "protein kinase, putative similar to protein kinase AKINbetagamma-2 [Zea mays] GI:11139548, AKINbetagamma-1 [Zea mays] GI:11139546; contains Pfam profile PF00571: CBS domain" 1 2 8 At1g11620 F-box family protein contains F-box domain Pfam:PF00646 1 2 9 At1g11660 "heat shock protein, putative strong similarity to gb|Z70314 heat-shock protein from Arabidopsis thaliana and is a member of the PF|00012 Hsp70 protein family" 1 2 10 At1g11840 "lactoylglutathione lyase, putative / glyoxalase I, putative highly similar to putative lactoylglutathione lyase SP:Q39366 from [Brassica oleracea]" 1 2 11 At1g11870 "seryl-tRNA synthetase, putative / serine--tRNA ligase, putative similar to PIR|T03949 serine--tRNA ligase (EC 6.1.1.11) serS {Zea mays}; contains Pfam profiles PF00587: tRNA synthetase class II core domain (G, H, P, S and T), PF02403: Seryl-tRNA synthetase N-terminal domain" 1 2 12 At1g11990 "expressed protein contains Pfam PF03138: Plant protein family. The function of this family of plant proteins is unknown; previously annotated as 'growth regulator protein -related' based on similarity to axi 1 protein (GB:X80301) (GI:559920) from [Nicotiana tabacum], which, due to scienitific fraud was retracted. Retraction in: Schell J. EMBO J 1999 May 17;18(10):2908. PMID:10400497.; expression supported by MPSS" 1 2 13 At1g12050 "fumarylacetoacetase, putative similar to fumarylacetoacetase (Fumarylacetoacetate hydrolase, Beta-diketonase, FAA)[Rattus norvegicus] SWISS-PROT:P25093" 1 2 14 At1g12210 "disease resistance protein (CC-NBS-LRR class), putative domain signature CC-NBS-LRR exists, suggestive of a disease resistance protein." 1 2 15 At1g12270 "stress-inducible protein, putative similar to sti (stress inducible protein) [Glycine max] GI:872116; contains Pfam profile PF00515 TPR Domain" 1 2 16 At1g15020 "thioredoxin family protein low similarity to FAD-dependent sulfhydryl oxidase-2 [Rattus norvegicus] GI:12483919; contains Pfam profiles PF00085: Thioredoxin, PF04777: Erv1 / Alr family" 1 2 17 At1g15080 phosphatidic acid phosphatase family protein / PAP2 family protein similar to phosphatidic acid phosphatase 2a2 [Cavia porcellus] GI:3641336; contains Pfam profile PF01569 PAP2 superfamily 1 2 18 At1g15215 expressed protein 1 2 19 At1g15240 "phox (PX) domain-containing protein weak similarity to SP|Q9Y5W8 Sorting nexin 13 {Homo sapiens}; contains Pfam profiles PF00787: PX domain, PF02194: PXA domain" 1 2 20 At1g15400 expressed protein ESTs gb|H37295 and gb|R64895 come from this gene 1 2 21 At1g15430 expressed protein 1 2 22 At1g15610 hypothetical protein 1 2 23 At1g15680 F-box family protein contains Pfam:PF00646 F-box domain 1 2 24 At1g18460 "lipase family protein similar to triacylglycerol lipase, gastric precursor (EC 3.1.1.3) {Canis familiaris} [SP|P80035]" 1 2 25 At1g18500 "2-isopropylmalate synthase, putative strong similarity to 2-isopropylmalate synthase (IMS1) [Arabidopsis thaliana] GI:12330687; contains Pfam profile PF00682: HMGL-like" 1 3 1 At1g18670 "protein kinase family protein contains Protein kinases ATP-binding region signature, PROSITE:PS00107 and Serine/Threonine protein kinases active-site signature, PROSITE:PS00108" 1 3 2 At1g18730 expressed protein 1 3 3 At1g18920 hypothetical protein contains Pfam profile PF03794: Domain of Unknown function 1 3 4 At1g18990 "expressed protein contains Pfam profile PF04576: Protein of unknown function, DUF593" 1 3 5 At1g19120 "small nuclear ribonucleoprotein, putative / snRNP, putative / Sm protein, putative similar to U6 snRNA-associated Sm-like protein LSm1 (Small nuclear ribonuclear CaSm, Cancer-associated Sm-like) [Homo sapiens] SWISS-PROT:O15116" 1 3 6 At1g19160 F-box family protein-related contains weak hit to TIGRFAM TIGR01640 : F-box protein interaction domain 1 3 7 At1g22070 bZIP family transcription factor (TGA3) identical to transcription factor GI:304113 from [Arabidopsis thaliana] 1 3 8 At1g22130 MADS-box family protein similar to MADS-box protein (ZAP1) GI:939784 from [Zea mays] 1 3 9 At1g22280 "protein phosphatase 2C, putative / PP2C, putative similar to protein phosphatase type 2C GI:4336436 from [Lotus japonicus]" 1 3 10 At1g22300 "14-3-3 protein GF14 epsilon (GRF10) identical to 14-3-3 protein GF14 epsilon GI:5802798, SP:P48347 from [Arabidopsis thaliana]" 1 3 11 At1g22460 expressed protein similar to axi 1 [Nicotiana tabacum] GI:559921; contains Pfam profile PF03138: Plant protein family 1 3 12 At1g22520 expressed protein contains Pfam PF04418: Domain of unknown function (DUF543) 1 3 13 At1g22690 "gibberellin-responsive protein, putative similar to SP|P46688 Gibberellin-regulated protein 2 precursor {Arabidopsis thaliana}; contains Pfam profile PF02704: Gibberellin regulated protein" 1 3 14 At1g22750 expressed protein 1 3 15 At1g26300 BSD domain-containing protein contains Pfam profile PF03909: BSD domain 1 3 16 At1g26340 "cytochrome b5, putative similar to cytochrome b5 GB:BAA74839 GI:4240120 from [Arabidopsis thaliana]" 1 3 17 At1g26530 "expressed protein contains Pfam profile: PF04900 protein of unknown function, DUF652; expression supported by MPSS" 1 3 18 At1g26590 "zinc finger (C2H2 type) family protein contains Pfam domain, PF00096: Zinc finger, C2H2 type" 1 3 19 At1g26740 expressed protein similar to 50S ribosomal protein L32 (SP:P80339) {Thermus thermophilus} 1 3 20 At1g26795 self-incompatibility protein-related similar to S3 self-incompatibility protein [Papaver rhoeas] GI:1107841 1 3 21 At1g26940 "peptidyl-prolyl cis-trans isomerase cyclophilin-type family protein contains Pfam domain, PF00160: peptidyl-prolyl cis-trans isomerase, cyclophilin-type" 1 3 22 At1g27020 expressed protein 1 3 23 At1g29900 "carbamoyl-phosphate synthase family protein similar to carbamoylphosphate synthetase GI:6552726 from [Medicago sativa]; contains Pfam profiles PF02786: Carbamoyl-phosphate synthase L chain ATP binding domain, PF00289: Carbamoyl-phosphate synthase L chain N-terminal domain, PF02787: Carbamoyl-phosphate synthetase large chain oligomerisation domain" 1 3 24 At1g29950 expressed protein 1 3 25 At1g30110 "diadenosine 5',5'''-P1,P4-tetraphosphate hydrolase, putative similar to diadenosine 5',5'''-P1,P4-tetraphosphate hydrolase GI:1888557 from [Lupinus angustifolius], [Hordeum vulgare subsp. vulgare] GI:2564253; contains Pfam profile PF00293: NUDIX domain" 1 4 1 At1g30140 hypothetical protein 1 4 2 At1g30360 early-responsive to dehydration stress protein (ERD4) nearly identical to ERD4 protein (early-responsive to dehydration stress) [Arabidopsis thaliana] GI:15375406; contains Pfam profile PF02714: Domain of unknown function DUF221 1 4 3 At1g30440 "phototropic-responsive NPH3 family protein contains NPH3 family domain, Pfam:PF03000" 1 4 4 At1g30570 "protein kinase family protein contains protein kinase domain, Pfam:PF00069" 1 4 5 At1g30630 "coatomer protein epsilon subunit family protein / COPE family protein similar to SP|O14579 Coatomer epsilon subunit (Epsilon-coat protein) (Epsilon-COP) from Homo sapiens, SP|Q60445 from Cricetulus griseus; ESTs gb|Z17908, gb|AA728673, gb|N96555, gb|H76335, gb|AA712463, gb|W43247, gb|T45611, gb|T21160, gb|T14119 and AI100483 come from this gene" 1 4 6 At1g33610 "leucine-rich repeat family protein contains leucine rich-repeat (LRR) domains Pfam:PF00560, INTERPRO:IPR001611" 1 4 7 At1g33710 expressed protein ; expression supported by MPSS 1 4 8 At1g33890 "avirulence-responsive protein, putative / avirulence induced gene protein, putative / AIG protein, putative similar to SP|P54120 AIG1 protein {Arabidopsis thaliana}; contains Pfam profile PF04548: AIG1 family" 1 4 9 At1g33950 "avirulence-responsive family protein / avirulence induced gene (AIG1) family protein similar to AIG1 protein SP:P54120 (Arabidopsis thaliana), NTGP4 GB:AAD09518 (Nicotiana tabacum); contains Pfam profile: PF00735 cell division protein (members of this family bind GTP)" 1 4 10 At1g34110 "leucine-rich repeat transmembrane protein kinase, putative contains similarity to receptor protein kinase-like protein GI:10177178 from [Arabidopsis thaliana]" 1 4 11 At1g34170 transcriptional factor B3 family protein contains Pfam profile: PF02362 B3 DNA binding domain; contains non-consensus GA donor splice site at intron 12 1 4 12 At1g34360 "translation initiation factor 3 (IF-3) family protein low similarity to Translation initiation factor IF-3 from [subsp. Schizaphis graminum] {Buchnera aphidicola} SP|P46243, {Salmonella typhimurium} SP|P33321; contains Pfam profiles PF05198: Translation initiation factor IF-3 N-terminal domain, PF00707: Translation initiation factor IF-3 C-terminal domain" 1 4 13 At1g34410 transcriptional factor B3 family protein / auxin-responsive factor AUX/IAA-related contains Pfam profile: PF02309 AUX/IAA family 1 4 14 At1g44542 cyclase family protein contains Pfam profile: PF04199 putative cyclase 1 4 15 At1g44740 expressed protein ; expression supported by MPSS 1 4 16 At1g44890 expressed protein 1 4 17 At1g44970 "peroxidase, putative similar to peroxidase GI:993004 from [Mercurialis annua]" 1 4 18 At1g45190 "expressed protein Since this genomic sequence region is unfinished, the annotated gene may be missing a stop codon or start codon" 1 4 19 At1g45233 "expressed protein Since this genomic sequence region is unfinished, the annotated gene may be missing a stop codon or start codon" 1 4 20 At1g46768 AP2 domain-containing protein RAP2.1 (RAP2.1) identical to AP2 domain containing protein RAP2.1 GI:2281627 from [Arabidopsis thaliana] 1 4 21 At1g47200 "MFP1 attachment factor, putative contains similarity to MFP1 attachment factor 1 GI:7546725 from [Lycopersicon esculentum] similar to MFP1 attachment factor 1 [Glycine max] gi|7546729|gb|AAF63659" 1 4 22 At1g50080 hypothetical protein 1 4 23 At1g50160 hypothetical protein similar to putative non-LTR retrolelement reverse transcriptase GB:AAD25836 GI:4587608 from [Arabidopsis thaliana] 1 4 24 At1g50370 "serine/threonine protein phosphatase, putative nearly identical to serine/threonine protein phosphatase [Arabidopsis thaliana] GI:14582206" 1 4 25 At1g50430 7-dehydrocholesterol reductase / 7-DHC reductase / sterol delta-7-reductase (ST7R) / dwarf5 protein (DWF5) identical to SP|Q9LDU6 7-dehydrocholesterol reductase (EC 1.3.1.21) (7-DHC reductase) (Sterol delta-7-reductase) (Dwarf5 protein) {Arabidopsis thaliana} 1 5 1 At1g50620 "PHD finger family protein contains Pfam domain, PF00628: PHD-finger" 1 5 2 At1g50680 "AP2 domain-containing transcription factor, putative similar to RAV1 [Arabidopsis thaliana] GI:3868857" 1 5 3 At1g50890 expressed protein 1 5 4 At1g50950 thioredoxin-related contains weak hit to Pfam PF00085: Thioredoxin; contains 2 predicted transmembrane domains 1 5 5 At1g53610 hypothetical protein 1 5 6 At1g53660 "phosphate translocator-related low similarity to SP|P52178 Triose phosphate/phosphate translocator, non-green plastid, chloroplast precursor (CTPT) {Brassica oleracea}, phosphoenolpyruvate/phosphate translocator precursor [Mesembryanthemum crystallinum] GI:9295275; contains 8 predicted transmembrane domains" 1 5 7 At1g53830 "pectinesterase family protein identical to pectinesterase 2 (PME2/ PE 2) SP:Q42534 from [Arabidopsis thaliana];contains Pfam profiles: PF01095 pectinesterase, PF04043 plant invertase/pectin methylesterase inhibitor" 1 5 8 At1g53880 "eukaryotic translation initiation factor 2B family protein / eIF-2B family protein similar to SP|Q64270 Translation initiation factor eIF-2B alpha subunit {Rattus norvegicus}; contains Pfam profiles PF04525: Protein of unknown function (DUF567), PF01008: Initiation factor 2 subunit family" 1 5 9 At1g54040 kelch repeat-containing protein contains Pfam PF01344: Kelch motif (4 repeats); similar to jsimilar to epithiospecifier (GI:16118838) [Arabidopsis thaliana] isioform contains AT-AG splice sites at intron 1 5 10 At1g54080 "oligouridylate-binding protein, putative similar to oligouridylate binding protein GI:6996560 from [Nicotiana plumbaginifolia]" 1 5 11 At1g54217 Expressed protein 1 5 12 At1g54270 eukaryotic translation initiation factor 4A-2 / eIF-4A-2 similar to eukaryotic translation initiation factor 4A GI:19696 from [Nicotiana plumbaginifolia] 1 5 13 At1g57790 F-box family protein contains Pfam PF00646: F-box domain 1 5 14 At1g57870 "shaggy-related protein kinase kappa, putative / ASK-kappa, putative similar to shaggy-related protein kinase kappa SP:Q39019 GI:717180 from [Arabidopsis thaliana]" 1 5 15 At1g58180 carbonic anhydrase family protein / carbonate dehydratase family protein similar to SP|P46512 Carbonic anhydrase 1 (EC 4.2.1.1) (Carbonate dehydratase 1) {Flaveria linearis}; contains Pfam profile PF00484: Carbonic anhydrase 1 5 16 At1g58227 hypothetical protein 1 5 17 At1g58360 amino acid permease I (AAP1) identical to amino acid permease I GI:22641 from [Arabidopsis thaliana] 1 5 18 At1g58420 expressed protein 1 5 19 At1g59171 hypothetical protein contains similarity to merozoite-piroplasm surface antigen Tams1 1 5 20 At1g59520 expressed protein (CW7) 1 5 21 At1g62400 "protein kinase, putative similar to protein kinase gi|170047|gb|AAA34002; contains protein kinase domain, Pfam:PF00069" 1 5 22 At1g62480 vacuolar calcium-binding protein-related contains weak similarity to vacuolar calcium binding protein [Raphanus sativus] gi|9049359|dbj|BAA99394 1 5 23 At1g62660 "beta-fructosidase (BFRUCT3) / beta-fructofuranosidase / invertase, vacuolar identical to beta-fructosidase GB:CAA67560 GI:1429209 [Arabidopsis thaliana]; supported by full-length cDNA GI:14517549; identical to cDNA Beta-fructosidase GI:3115854" 1 5 24 At1g62720 pentatricopeptide (PPR) repeat-containing protein contains multiple PPR repeats Pfam Profile: PF01535 1 5 25 At1g62855 expressed protein 1 6 1 At1g62910 pentatricopeptide (PPR) repeat-containing protein contains Pfam profile PF01535: PPR repeat 1 6 2 At1g63070 pentatricopeptide (PPR) repeat-containing protein contains Pfam profile PF01535: PPR repeat 1 6 3 At1g63110 cell division cycle protein-related contains 9 transmembrane domains; similar to PIG-U (GI:27372215) [Rattus norvegicus]; similar to Cell division cycle protein 91-like 1 (CDC91-like 1 protein) (PIG-U) (Swiss-Prot:Q9H490) [Homo sapiens] 1 6 4 At1g65840 "amine oxidase family protein similar to polyamine oxidase SP:O64411 [Zea mays]; contains Pfam profile PF01593 amine oxidase, flavin-containing" 1 6 5 At1g65890 "acyl-activating enzyme 12 (AAE12) similar to AMP-binding protein GI:1903034 from [Brassica napus]; contains Pfam AMP-binding domain PF00501; identical to cDNA acyl-activating enzyme 12 (At1g65890) mRNA GI:29893228, acyl-activating enzyme 12 [Arabidopsis thaliana] GI:29893229" 1 6 6 At1g66070 translation initiation factor-related similar to Eukaryotic translation initiation factor 3 subunit 1 (eIF-3 alpha) (eIF3 p35) (eIF3j) (Swiss-Prot:O75822) [Homo sapiens] 1 6 7 At1g66130 oxidoreductase N-terminal domain-containing protein similar to AX110P [Daucus carota] GI:285739; contains Pfam profile PF01408: Oxidoreductase family NAD-binding Rossmann fold 1 6 8 At1g66260 "RNA and export factor-binding protein, putative similar to GI:7159943 from [Mus musculus] (RNA 6 (4), 638-650 (2000))" 1 6 9 At1g66330 senescence-associated family protein similar to senescence-associated protein (GI:12836895) [Ipomoea batatas] 1 6 10 At1g66500 "zinc finger (C2H2-type) family protein contains Prosite PS00028: Zinc finger, C2H2 type, domain; similar to S-locus protein 4 (GI:6069478) [Brassica rapa]; similar to Pre-mRNA cleavage complex II protein Pcf11 (Fragment) (Swiss-Prot:O94913) [Homo sapiens]" 1 6 11 At1g66550 WRKY family transcription factor similar to DNA-binding protein 3 [Nicotiana tabacum] GI:7406995 1 6 12 At1g69240 "hydrolase, alpha/beta fold family protein low similarity to SP|Q40708 PIR7A protein {Oryza sativa}, polyneuridine aldehyde esterase GI:6651393 from [Rauvolfia serpentina], ethylene-induced esterase [Citrus sinensis] GI:14279437; contains Pfam profile PF00561: hydrolase, alpha/beta fold family" 1 6 13 At1g69290 pentatricopeptide (PPR) repeat-containing protein contains Pfam profile PF01535: PPR repeat 1 6 14 At1g69420 zinc finger (DHHC type) family protein contains Pfam profile: PF01529: DHHC zinc finger domain 1 6 15 At1g69480 "EXS family protein / ERD1/XPR1/SYG1 family protein similar to PHO1 protein [Arabidopsis thaliana] GI:20069032; contains Pfam profiles PF03105: SPX domain, PF03124: EXS family" 1 6 16 At1g69600 zinc finger homeobox family protein / ZF-HD homeobox family protein 1 6 17 At1g69660 meprin and TRAF homology domain-containing protein / MATH domain-containing protein similar to ubiquitin-specific protease 12 [Arabidopsis thaliana] GI:11993471; contains Pfam profile PF00917: MATH domain 1 6 18 At1g69840 band 7 family protein strong similarity to hypersensitive-induced response protein [Zea mays] GI:7716466; contains Pfam profile PF01145: SPFH domain / Band 7 family 1 6 19 At1g69900 expressed protein contains Pfam profile: PF04601 protein of unknown function (DUF569 1 6 20 At1g72700 "haloacid dehalogenase-like hydrolase family protein similar to Potential phospholipid-transporting ATPase (EC 3.6.3.1) from Homo sapiens [SP|Q9Y2Q0, SP|O43520]; contains InterPro accession IPR005834: Haloacid dehalogenase-like hydrolase" 1 6 21 At1g72760 "protein kinase family protein contains protein kinase domain, Pfam:PF00069" 1 6 22 At1g72930 "Toll-Interleukin-Resistance (TIR) domain-containing protein domain signature TIR exists, suggestive of a disease resistance protein." 1 6 23 At1g72990 glycosyl hydrolase family 35 protein similar to beta-galactosidase GI:2289790 from [Bacillus circulans]; contains Pfam profile PF01301: Glycosyl hydrolases family 35 1 6 24 At1g73170 expressed protein 1 6 25 At1g73210 expressed protein 1 7 1 At1g73370 "sucrose synthase, putative / sucrose-UDP glucosyltransferase, putative similar to sucrose synthase GI:6682841 from [Citrus unshiu]" 1 7 2 At1g73430 sec34-like family protein contains Pfam PF04136: Sec34-like family profile; similar to Conserved oligomeric Golgi complex component 3 (Vesicle docking protein SEC34 homolog) (p94) (Swiss-Prot:Q96JB2) [Homo sapiens] 1 7 3 AT5G57480 PC-1 1 7 4 3XSSC PC-1 1 7 5 AT1G29930 PC-1 1 7 6 3XSSC PC-1 1 7 7 AT3G44150 PC-1 1 7 8 3XSSC PC-1 1 7 9 AT4G00810 PC-1 1 7 10 3XSSC PC-1 1 7 11 At1g76260 transducin family protein / WD-40 repeat family protein contains 6 WD-40 repeats (PF00400); similar to retinoblastoma A associated protein; RbAp48 (GI:3309245) [Xenopus laevis] 1 7 12 At1g76320 "far-red impaired responsive protein, putative similar to far-red impaired response protein FAR1 [Arabidopsis thaliana] gi|5764395|gb|AAD51282; contains Pfam:PF03101 domain: FAR1 family" 1 7 13 At1g76450 oxygen-evolving complex-related SP:Q9S720; contains a PsbP domain 1 7 14 At1g76510 ARID/BRIGHT DNA-binding domain-containing protein contains Pfam profile PF01388: ARID/BRIGHT DNA binding domain 1 7 15 At1g76670 "transporter-related low similarity to glucose-6-phosphate/phosphate-translocator precursor [Solanum tuberosum] GI:2997593, GDP-Mannose transporter [Arabidopsis thaliana] GI:15487237; contains Pfam profile PF00892: Integral membrane protein" 1 7 16 At1g76720 "eukaryotic translation initiation factor 2 family protein / eIF-2 family protein similar to SP|O60841 Translation initiation factor IF-2 {Homo sapiens}; contains Pfam profiles PF00009: Elongation factor Tu GTP binding domain, PF03144: Elongation factor Tu domain 2" 1 7 17 At1g76890 "trihelix DNA-binding protein / GT-2 factor (GT2) identical to GT2 factor [Arabidopsis thaliana] GI:416490, GI:2664202 (DNA binding factor GT-2 from Arabidopsis)" 1 7 18 At1g76930 "proline-rich extensin-like family protein contains extensin-like region, Pfam:PF04554" 1 7 19 At1g79560 "FtsH protease, putative contains similarity to chloroplast FtsH protease GI:5804782 from [Nicotiana tabacum]" 1 7 20 At1g79610 "sodium proton exchanger, putative (NHX6) identical to Na+/H+ exchanger 6 [Arabidopsis thaliana] gi|19919848|gb|AAM08407 (Plant J. (2002) In press); contains similarity to Na+/H+ antiporter GI:1655701 from [Xenopus laevis]; contains non-consensus AT/AC splice sites; Member of The Monovalent Cation:Proton Antiporter (CPA1) Family, PMID:11500563" 1 7 21 At1g79750 "malate oxidoreductase, putative similar to malate oxidoreductase (NADP-dependent malic enzyme) GB:P34105 (Populus balsamifera subsp. trichocarpa)" 1 7 22 At1g79790 haloacid dehalogenase-like hydrolase family protein contains InterPro accession IPR005834: Haloacid dehalogenase-like hydrolase 1 7 23 At1g79920 "heat shock protein 70, putative / HSP70, putative contains Pfam profile: PF00012 Heat shock hsp70 proteins; similar to heat-shock proteins GB:CAA94389, GB:AAD55461 [Arabidopsis thaliana]" 1 7 24 At1g79970 expressed protein 1 7 25 At1g80110 expressed protein contains similarity to SKP1 interacting partner 3 [Arabidopsis thaliana] GI:10716951 1 8 1 At1g80170 "polygalacturonase, putative / pectinase, putative similar to polygalacturonase GI:7381227 from [Lycopersicon esculentum]; contains Pfam profile PF00295: Glycosyl hydrolases family 28 (polygalacturonases)" 1 8 2 At2g03010 expressed protein 1 8 3 At2g03060 MADS-box family protein 1 8 4 At2g03260 "EXS family protein / ERD1/XPR1/SYG1 family protein similar to PHO1 protein [Arabidopsis thaliana] GI:20069032; contains Pfam profiles PF03105: SPX domain, PF03124: EXS family" 1 8 5 At2g03320 hypothetical protein 1 8 6 At2g03505 "glycosyl hydrolase family protein 17 similar to Glucan endo-1,3-beta-glucosidase precursor (EC 3.2.1.39) ((1-3)-beta- glucan endohydrolase) ((1-3)-beta-glucanase) (Beta-1,3- endoglucanase) (Swiss-Prot:P52409) [Triticum aestivum]; similar to beta 1,3-glucanase (GI:924953) [Triticum aestivum]" 1 8 7 At2g03560 "F-box family protein (FBX7) identical to F-box protein family, AtFBX7 (GI:20197899) [Arabidopsis thaliana]; contains F-box domain PF:00646" 1 8 8 At2g03750 "sulfotransferase family protein similar to similar to steroid sulfotransferase 3 [Brassica napus] GI:3420008, steroid sulfotransferase 1 [Brassica napus] GI:3420004; contains Pfam profile PF00685: Sulfotransferase domain" 1 8 9 At2g03810 18S pre-ribosomal assembly protein gar2-related contains weak similarity to Swiss-Prot:P41891 protein gar2 [Schizosaccharomyces pombe] 1 8 10 At2g07706 expressed protein 1 8 11 At2g07718 "cytochrome b, putative similar to Cytochrome b (Swiss-Prot:P42792) [Arabidopsis thaliana]; similar to Cytochrome b (Swiss-Prot:P09843) [Oenothera bertiana]; contains 3 transmembrane domains" 1 8 12 At2g07750 "DEAD box RNA helicase, putative similar to RNA helicase RH25 [Arabidopsis thaliana] GI:3776023; contains Pfam profiles PF00270: DEAD/DEAH box helicase, PF00271: Helicase conserved C-terminal domain" 1 8 13 At2g09388 hypothetical protein 1 8 14 At2g10350 "Ulp1 protease family protein similar to At5g28170, At1g35110, At1g44880, At3g42530, At4g19320, At5g36020, At4g03970, At3g43010 ; contains Pfam profile PF02902: Ulp1 protease family, C-terminal catalytic domain" 1 8 15 At2g10450 "14-3-3 protein, putative / grf15, putative contains similarity to GF14 psi chain GI:166717, SP:P42644 from [Arabidopsis thaliana]" 1 8 16 At2g10965 hypothetical protein 1 8 17 At2g11010 hypothetical protein 1 8 18 At2g16220 F-box family protein 1 8 19 At2g16290 F-box family protein contains Pfam PF00646: F-box domain; 1 8 20 At2g16470 "zinc finger (CCCH-type) family protein / GYF domain-containing protein contains Pfam domains PF00642: Zinc finger C-x8-C-x5-C-x3-H type (and similar), PF02213: GYF domain" 1 8 21 At2g16520 hypothetical protein 1 8 22 At2g16730 glycosyl hydrolase family 35 protein similar to beta-galactosidase BG1 GI:15081596 from [Vitis vinifera] 1 8 23 At2g16790 shikimate kinase family protein similar to thermosensitive glucokinase from Escherichia coli [SP|P39208] [SP|P46859]; contains Pfam profile PF01202: shikimate kinase 1 8 24 At2g16940 RNA recognition motif (RRM)-containing protein 1 8 25 At2g17000 mechanosensitive ion channel domain-containing protein / MS ion channel domain-containing protein contains Pfam profile PF00924: Mechanosensitive ion channel 1 9 1 At2g19800 expressed protein similar to myo-inositol oxygenase [Sus scrofa] gi|17432544|gb|AAL39076 1 9 2 At2g19870 "tRNA/rRNA methyltransferase (SpoU) family protein similar to SP|P25270 Ribose methyltransferase PET56 (EC 2.1.1.-) {Saccharomyces cerevisiae}; contains Pfam profile PF00588: SpoU rRNA Methylase (RNA methyltransferase, TrmH) family" 1 9 3 At2g20030 "zinc finger (C3HC4-type RING finger) family protein similar to RING-H2 zinc finger protein ATL6 [Arabidopsis thaliana] GI:4928403; contains Pfam profile PF00097: Zinc finger, C3HC4 type (RING finger)" 1 9 4 At2g20080 expressed protein 1 9 5 At2g20260 "photosystem I reaction center subunit IV, chloroplast, putative / PSI-E, putative (PSAE2) identical to SP|Q9S714; similar to SP|P12354 Photosystem I reaction center subunit IV, chloroplast precursor (PSI-E) {Spinacia oleracea}; contains Pfam profile PF02427: Photosystem I reaction centre subunit IV / PsaE" 1 9 6 At2g20320 DENN (AEX-3) domain-containing protein contains Pfam domain PF02141: DENN (AEX-3) domain 1 9 7 At2g20495 expressed protein 1 9 8 At2g20540 pentatricopeptide (PPR) repeat-containing protein contains INTERPRO:IPR002885 PPR repeats 1 9 9 At2g23160 F-box family protein contains Pfam PF00646: F-box domain; contains TIGRFAM TIGR01640 : F-box protein interaction domain 1 9 10 At2g23220 "cytochrome P450, putative " 1 9 11 At2g23390 expressed protein 1 9 12 At2g23450 "protein kinase family protein contains protein kinase domain, Pfam:PF00069" 1 9 13 At2g23620 "esterase, putative similar to ethylene-induced esterase [Citrus sinensis] GI:14279437, polyneuridine aldehyde esterase [Rauvolfia serpentina] GI:6651393; contains Pfam profile PF00561: hydrolase, alpha/beta fold family" 1 9 14 At2g23690 expressed protein 1 9 15 At2g23890 5' nucleotidase family protein contains Pfam PF05761: 5' nucleotidase family; similar to Cytosolic purine 5'-nucleotidase (EC 3.1.3.5) (5'-nucleotidase cytosolic II) (Swiss-Prot:P49902) [Homo sapiens] 1 9 16 At2g23945 "chloroplast nucleoid DNA-binding protein-related contains weak similarity to GP|2541876|dbj|BAA22813.1||D26015 CND41, chloroplast nucleoid DNA binding protein {Nicotiana tabacum}" 1 9 17 At2g26790 pentatricopeptide (PPR) repeat-containing protein contains Pfam profile PF01535: PPR repeat 1 9 18 At2g26830 "choline/ethanolamine kinase family protein similar to SP|Q9HBU6 Ethanolamine kinase (EC 2.7.1.82) (EKI){Homo sapiens}, GmCK3p [Glycine max] GI:1438883; contains Pfam profile PF01633: Choline/ethanolamine kinase" 1 9 19 At2g26980 CBL-interacting protein kinase 3 (CIPK3) identical to CBL-interacting protein kinase 3 [Arabidopsis thaliana] gi|9280638|gb|AAF86507 1 9 20 At2g27030 "calmodulin-2/3/5 (CAM5) (TCH1) identical to calmodulin GI:474183 from [Arabidopsis thaliana], SP|P25069 Calmodulin-2/3/5 {Arabidopsis thaliana}" 1 9 21 At2g27160 hypothetical protein 1 9 22 At2g27220 homeodomain-containing protein 1 9 23 At2g27360 "lipase, putative similar to lipase [Arabidopsis thaliana] GI:1145627; contains Pfam profile PF00657: Lipase/Acylhydrolase with GDSL-like motif" 1 9 24 At2g27395 cysteine protease-related contains similarity to senescence-specific cysteine protease GI:5823018 from [Brassica napus] 1 9 25 At2g30130 LOB domain protein 12 / lateral organ boundaries domain protein 12 (LBD12) identical to SP|Q8LBW3 LOB domain protein 12 {Arabidopsis thaliana} 1 10 1 At2g30200 expressed protein 1 10 2 At2g30350 endo/excinuclease amino terminal domain-containing protein contains Pfam domain PF01541: Endo/excinuclease amino terminal domain 1 10 3 At2g30400 ovate family protein 57% similar to ovate protein (GI:23429649) [Lycopersicon esculentum]; contains TIGRFAM TIGR01568 : uncharacterized plant-specific domain TIGR01568 1 10 4 At2g30560 glycine-rich protein 1 10 5 At2g30600 BTB/POZ domain-containing protein contains Pfam PF00651: BTB/POZ domain; contains Interpro IPR000210/ PS50097: BTBB/POZ domain; similar to MigA (GI:1841872) [Dictyostelium discoideum] 1 10 6 At2g30740 "serine/threonine protein kinase, putative similar to Pto kinase interactor 1 (Pti1)[Lycopersicon esculentum] gi|3668069|gb|AAC61805" 1 10 7 At2g30800 "DEIH-box RNA/DNA helicase, putative similar to DEIH-box RNA/DNA helicase [Arabidopsis thaliana] GI:5881579; contains Pfam profiles PF04408: Helicase associated domain (HA2), PF00271: Helicase conserved C-terminal domain" 1 10 8 At2g33410 "heterogeneous nuclear ribonucleoprotein, putative / hnRNP, putative " 1 10 9 At2g33460 p21-rho-binding domain-containing protein contains Pfam PF00786: P21-Rho-binding domain 1 10 10 At2g33600 "cinnamoyl-CoA reductase family similar to cinnamoyl-CoA reductase from Pinus taeda [GI:17978649], Eucalyptus gunnii [GI:2058311]" 1 10 11 At2g33670 "seven transmembrane MLO family protein / MLO-like protein 5 (MLO5) identical to MLO-like protein 5 (AtMlo5) [Arabidopsis thaliana] SWISS-PROT:O22815; similar to MLO protein SWISS-PROT:P93766, NCBI_gi:1877221 [Hordeum vulgare][Barley]" 1 10 12 At2g33780 VQ motif-containing protein contains PF05678: VQ motif 1 10 13 At2g33820 mitochondrial substrate carrier family protein (BAC1) contains Pfam profile: PF00153 mitochondrial carrier protein 1 10 14 At2g34040 apoptosis inhibitory 5 (API5) family protein contains Pfam domain PF05918 Apoptosis inhibitory protein 5 (API5) 1 10 15 At2g34080 "cysteine proteinase, putative contains similarity to cysteine protease SPCP1 GI:13491750 from [Ipomoea batatas]" 1 10 16 At2g36680 expressed protein 1 10 17 At2g36720 "PHD finger transcription factor, putative " 1 10 18 At2g36885 expressed protein 1 10 19 At2g36920 expressed protein 1 10 20 At2g37060 "CCAAT-box binding transcription factor, putative similar to CAAT-box DNA binding protein subunit B (NF-YB) (SP:P25209) (GI:22380) [Zea mays]; contains Pfam PF00808 : Histone-like transcription factor (CBF/NF-Y) and archaeal histone" 1 10 21 At2g37110 "expressed protein contains Pfam profile PF04749: Protein of unknown function, DUF614" 1 10 22 At2g37260 WRKY family transcription factor (TTG2) contains Pfam profile: PF03106 WRKY DNA -binding domain 1 10 23 At2g37320 pentatricopeptide (PPR) repeat-containing protein contains INTERPRO:IPR002885 PPR repeats 1 10 24 At2g39920 acid phosphatase class B family protein weak similarity to pod storage protein [Phaseolus vulgaris GI:2627233 SP|P10743 STEM 31 kDa glycoprotein precursor (Vegetative storage protein B) {Glycine max}; contains Pfam profile PF03767: HAD superfamily (subfamily IIIB) phosphatase 1 10 25 At2g39975 hypothetical protein 1 11 1 At2g40110 "yippee family protein similar to mdgl-1 [Mus musculus] GI:10441648, Yippee protein [Drosophila melanogaster] GI:5713279; contains Pfam profile PF03226: Yippee putative zinc-binding protein" 1 11 2 At2g40130 heat shock protein-related contains similarity to 101 kDa heat shock protein; HSP101 [Triticum aestivum] gi|11561808|gb|AAC83689 1 11 3 At2g40280 dehydration-responsive family protein similar to early-responsive to dehydration stress ERD3 protein [Arabidopsis thaliana] GI:15320410; contains Pfam profile PF03141: Putative methyltransferase 1 11 4 At2g40330 Bet v I allergen family protein contains Pfam profile PF00407: Pathogenesis-related protein Bet v I family 1 11 5 At2g40470 LOB domain protein 15 / lateral organ boundaries domain protein 15 (LBD15) identical to SP|Q8L5T5 LOB domain protein 15 {Arabidopsis thaliana}; similar to ASYMMETRIC LEAVES2 [Arabidopsis thaliana] GI:19918971 1 11 6 At2g40520 nucleotidyltransferase family protein contains Pfam profile: PF01909 nucleotidyltransferase domain 1 11 7 At2g43080 "oxidoreductase, 2OG-Fe(II) oxygenase family protein similar to prolyl 4-hydroxylase, alpha subunit, from Homo sapiens [GI:18073925]; contains PF03171 2OG-Fe(II) oxygenase superfamily domain" 1 11 8 At2g43140 basic helix-loop-helix (bHLH) family protein contains Pfam profile PF00010: Helix-loop-helix DNA-binding domain 1 11 9 At2g43270 F-box family protein contains Pfam PF00646: F-box domain; contains TIGRFAM TIGR01640 : F-box protein interaction domain 1 11 10 At2g43340 expressed protein 1 11 11 At2g43520 "trypsin inhibitor, putative similar to SP|P26780 Trypsin inhibitor 2 precursor (MTI-2) {Sinapis alba}" 1 11 12 At2g43570 "chitinase, putative similar to chitinase class IV GI:722272 from [Brassica napus]" 1 11 13 At2g43730 "lectin-related low similarity to lectin 3 [Helianthus tuberosus] GI:4091899, RTM1 [Arabidopsis thaliana] GI:6503088" 1 11 14 At2g43780 expressed protein 1 11 15 At2g46420 expressed protein 1 11 16 At2g46470 "OXA1 protein, putative similar to Oxa1 protein [Arabidopsis thaliana] GI:10176922" 1 11 17 At2g46610 "arginine/serine-rich splicing factor, putative similar to SP|P92964 Arginine/serine-rich splicing factor RSP31 {Arabidopsis thaliana}" 1 11 18 At2g46670 "pseudo-response regulator, putative / timing of CAB expression 1-like protein, putative similar to pseudo-response regulator 9 [Arabidopsis thaliana] GI:10281000, timing of CAB expression 1-like protein [Arabidopsis thaliana] GI:9247022" 1 11 19 At2g46820 expressed protein 1 11 20 At2g46880 calcineurin-like phosphoesterase family protein contains Pfam profile: PF00149 calcineurin-like phosphoesterase 1 11 21 At2g47020 "peptide chain release factor, putative similar to peptide chain release factor 1 [Escherichia coli] GI:147567; contains Pfam profiles PF00472: Peptidyl-tRNA hydrolase domain, PF03462: PCRF domain" 1 11 22 At2g47060 "serine/threonine protein kinase, putative similar to Pto kinase interactor 1 (Pti1)[Lycopersicon esculentum] gi|3668069|gb|AAC61805" 1 11 23 At3g02390 expressed protein 1 11 24 At3g02450 "cell division protein ftsH, putative similar to SWISS-PROT:P46469 cell division protein ftsH homolog [Lactococcus lactis]; contains Pfam domain, PF00004: ATPase, AAA family ('A'TPases 'A'ssociated with diverse cellular 'A'ctivities)" 1 11 25 At3g02570 phosphomannose isomerase type I family protein contains Pfam profile: PF01238 phosphomannose isomerase type I 1 12 1 At3g02630 "acyl-[acyl-carrier-protein] desaturase, putative / stearoyl-ACP desaturase, putative similar to Acyl-[acyl-carrier protein] desaturase from Sesamum indicum GI:575942, Cucumis sativus SP|P32061, Ricinus communis SP|P22337; contains Pfam profile PF03405 Fatty acid desaturase" 1 12 2 At3g02810 "protein kinase family protein contains protein kinase domain, Pfam:PF00069" 1 12 3 At3g02860 expressed protein 1 12 4 At3g03020 expressed protein 1 12 5 At3g03080 "NADP-dependent oxidoreductase, putative similar to probable NADP-dependent oxidoreductase (zeta-crystallin homolog) P2 [SP|Q39173][gi:886430], Arabidopsis thaliana; similar to allyl alcohol dehydrogenase [Nicotiana tabacum] GI:6692816" 1 12 6 At3g05675 expressed protein 1 12 7 At3g05710 "syntaxin, putative similar to syntaxin of plants 42 [Arabidopsis thaliana] GI:5059352" 1 12 8 At3g05870 "zinc finger (C3HC4-type RING finger) family protein contains Pfam profile: PF00097 zinc finger, C3HC4 type (RING finger)" 1 12 9 At3g05930 germin-like protein (GLP8) identical to germin-like protein subfamily 2 member 3 SP|P93000 [PMID:9869400]; contains Pfam profile: PF01072 germin family 1 12 10 At3g06050 "alkyl hydroperoxide reductase/thiol specific antioxidant (AhpC/TSA)/mal allergen family protein identical to SP|Q9M7T0 Putative peroxiredoxin, mitochondrial precursor {Arabidopsis thaliana}; similar to thioredoxin peroxidase [Capsicum annuum] GI:18654477; contains Pfam profile: PF00578 AhpC/TSA (alkyl hydroperoxide reductase and thiol-specific antioxidant) family" 1 12 11 At3g06090 hypothetical protein 1 12 12 At3g06240 F-box family protein contains F-box domain Pfam:PF00646 1 12 13 At3g06300 "oxidoreductase, 2OG-Fe(II) oxygenase family protein similar to prolyl 4-hydroxylase, alpha subunit, from Rattus norvegicus [GI:474940], Mus musculus [SP|Q60715], Homo sapiens [GI:18073925]; contains PF03171 2OG-Fe(II) oxygenase superfamily domain" 1 12 14 At3g09230 myb family transcription factor identical to transforming protein (myb) homolog GB:S22520 [Arabidopsis thaliana] 1 12 15 At3g09290 "zinc finger (C2H2 type) family protein ; contains Pfam profile: PF00096 Zinc finger, C2H2 type" 1 12 16 At3g09470 expressed protein 1 12 17 At3g09520 exocyst subunit EXO70 family protein contains Pfam domain PF03081: Exo70 exocyst complex subunit; 1 12 18 At3g09710 calmodulin-binding family protein low similarity to SF16 protein [Helianthus annuus] GI:560150; contains Pfam profile PF00612: IQ calmodulin-binding motif 1 12 19 At3g09760 "zinc finger (C3HC4-type RING finger) family protein ; contains Pfam profile PF00097: Zinc finger, C3HC4 type (RING finger)" 1 12 20 At3g09900 "Ras-related GTP-binding protein, putative similar to GTP-binding protein GI:871510 from [Pisum sativum]; contains Pfam profile: PF00071 Ras family" 1 12 21 At3g09940 "monodehydroascorbate reductase, putative similar to monodehydroascorbate reductase (NADH) GB:JU0182 (Cucumis sativus)" 1 12 22 At3g12340 "immunophilin, putative / FKBP-type peptidyl-prolyl cis-trans isomerase, putative contains Pfam profile: PF00254, FKBP-type peptidyl-prolyl cis-trans isomerases" 1 12 23 At3g12380 actin/actin-like family protein similar to SP|P53946 Actin-like protein ARP5 {Saccharomyces cerevisiae}; contains Pfam profile PF00022: Actin 1 12 24 At3g12550 "XH/XS domain-containing protein / XS zinc finger domain-containing protein contains Pfam domains PF03469: XH domain, PF03468: XS domain and PF03470: XS zinc finger domain" 1 12 25 At3g12610 "DNA-damage-repair/toleration protein, putative (DRT100) similar to DNA-damage-repair/toleration protein DRT100 [Precursor] SWISS-PROT:Q00874, NCBI_gi:5701788; contains multiple LRR repeats Pfam profile: PF00560" 1 13 1 At3g12770 pentatricopeptide (PPR) repeat-containing protein contains INTERPRO:IPR002885 PPR repeats 1 13 2 At3g12830 auxin-responsive family protein similar to auxin-induced protein (SP:P33082) [Glycine max] 1 13 3 At3g13000 "expressed protein contains Pfam profile PF04784: Protein of unknown function, DUF547" 1 13 4 At3g13050 "transporter-related low similarity to apical organic cation transporter [Sus scrofa] GI:2062135, SP|Q02563 Synaptic vesicle protein 2 (SV2) {Rattus norvegicus}; contains Pfam profile PF00083: major facilitator superfamily protein" 1 13 5 At3g15355 ubiquitin-conjugating enzyme-related similar to ubiquitin-conjugating enzyme (GI:3319990) [Mus musculus]; similar to Baculoviral IAP repeat-containing protein 6 (Ubiquitin-conjugating BIR-domain enzyme apollon) (Swiss-Prot:Q9NR09) [Homo sapiens]; 1 13 6 At3g15395 expressed protein 1 13 7 At3g15550 expressed protein ; expression supported by MPSS 1 13 8 At3g15605 hypothetical protein 1 13 9 At3g15760 expressed protein 1 13 10 At3g15820 phosphatidic acid phosphatase-related / PAP2-related contains Pfam profile PF01569: PAP2 superfamily 1 13 11 At3g15980 "coatomer protein complex, subunit beta 2 (beta prime), putative contains 7 WD-40 repeats (PF00400) (1 weak); identical to coatomer protein complex, beta prime (beta'-COP) protein {Arabidopsis thaliana} (GI:9294445); similar to Coatomer beta' subunit (Beta'-coat protein) (Beta'-COP) (p102) (SP:P35606) [Homo sapiens]" 1 13 12 At3g16020 hypothetical protein 1 13 13 At3g18680 aspartate/glutamate/uridylate kinase family protein similar to UMP-kinase GB:CAB38122 gi:4468612 from [Lactococcus lactis] ; contains Pfam profile PF00696: Amino acid kinase family 1 13 14 At3g18740 60S ribosomal protein L30 (RPL30C) similar to 60S RIBOSOMAL PROTEIN L30 GB:O49884 from [Lupinus luteus] 1 13 15 At3g18870 mitochondrial transcription termination factor-related / mTERF-related contains Pfam profile PF02536: mTERF 1 13 16 At3g18930 "zinc finger (C3HC4-type RING finger) family protein contains Pfam profile: PF00097 Zinc finger, C3HC4 type (RING finger)" 1 13 17 At3g19085 hypothetical protein 1 13 18 At3g19150 kip-related protein 6 (KRP6) / cyclin-dependent kinase inhibitor 6 (ICK6) identical to cyclin-dependent kinase inhibitor 6 (krp6) [Arabidopsis thaliana] GI:14422295 1 13 19 At3g19310 expressed protein similar to GB:CAB16796 from [Arabidopsis thaliana] 1 13 20 At3g19360 "zinc finger (CCCH-type) family protein contains Pfam domain, PF00642: Zinc finger C-x8-C-x5-C-x3-H type (and similar)" 1 13 21 At3g22060 receptor protein kinase-related contains Pfam profile: PF01657 Domain of unknown function that is usually associated with protein kinase domain Pfam:PF00069 1 13 22 At3g22110 "20S proteasome alpha subunit C (PAC1) (PRC9) identical to GB:AAC32057 from [Arabidopsis thaliana] (Genetics (1998) 149 (2), 677-692); identical to cDNA proteasome subunit prc9 GI:2511583" 1 13 23 At3g22270 expressed protein 1 13 24 At3g22350 "F-box family protein similar to F-box protein family, AtFBX9 (GI:20197985) [Arabidopsis thaliana]; contains Pfam PF00646: F-box domain; contains TIGRFAM TIGR01640 : F-box protein interaction domain" 1 13 25 At3g22460 "cysteine synthase, putative / O-acetylserine (thiol)-lyase, putative / O-acetylserine sulfhydrylase, putative nearly identical over 185 amino acids to SP|P47998 Cysteine synthase (EC 4.2.99.8) (O-acetylserine sulfhydrylase) (O-acetylserine (Thiol)-lyase) {Arabidopsis thaliana}" 1 14 1 At3g22500 late embryogenesis abundant protein (ECP31) / LEA protein identical to LEA protein in group 5 (AtECP31) [Arabidopsis thaliana] GI:1526422; contains Pfam profile PF04927: Seed maturation protein 1 14 2 At3g22690 pentatricopeptide (PPR) repeat-containing protein contains Pfam profile PF01535: PPR repeat 1 14 3 At3g22750 "protein kinase, putative similar to protein kinase ATMRK1 [Arabidopsis thaliana] gi|2351097|dbj|BAA22079" 1 14 4 At3g25660 "glutamyl-tRNA(Gln) amidotransferase, putative similar to SP|O06491 Glutamyl-tRNA(Gln) amidotransferase subunit A (EC 6.3.5.-) {Bacillus subtilis}; contains Pfam profile PF01425: Amidase" 1 14 5 At3g25717 expressed protein 1 14 6 At3g25860 dihydrolipoamide S-acetyltransferase (LTA2) identical to dihydrolipoamide S-acetyltransferase (LTA2) [Arabidopsis thaliana] GI:5881963 1 14 7 At3g25900 homocysteine S-methyltransferase 1 (HMT-1) identical to GB:AAF23821 from [Arabidopsis thaliana] 1 14 8 At3g26060 "peroxiredoxin Q, putative similar to peroxiredoxin Q [Sedum lineare] GI:6899842; contains Pfam profile: PF00578 AhpC/TSA (alkyl hydroperoxide reductase and thiol-specific antioxidant) family" 1 14 9 At3g26110 expressed protein 1 14 10 At3g26235 hypothetical protein 1 14 11 At3g26290 "cytochrome P450 71B26, putative (CYP71B26) identical to cytochrome P450 71B26 (SP:Q9LTL0) [Arabidopsis thaliana]; contains Pfam profile: PF00067 cytochrome P450" 1 14 12 At3g29020 myb family transcription factor (MYB110) contains Pfam profile: PF00249 myb-like DNA-binding domain 1 14 13 At3g29050 receptor-like protein kinase-related contains Pfam profile: PF01657 Domain of unknown function that is usually associated with protein kinase domain Pfam:PF00069; similar to receptor-like protein kinase 5 (GI:13506747){Arabidopsis thaliana} 1 14 14 At3g29185 expressed protein 1 14 15 At3g29240 "expressed protein similar to At1g33780 [Arabidopsis thaliana]; contains Pfam profile PF02622: Uncharacterized ACR, COG1678" 1 14 16 At3g29360 "UDP-glucose 6-dehydrogenase, putative very strong similarity to SP|Q96558 UDP-glucose 6-dehydrogenase (EC 1.1.1.22) (UDP-Glc dehydrogenase) (UDP-GlcDH) (UDPGDH) {Glycine max}; contains Pfam profiles PF03721: UDP-glucose/GDP-mannose dehydrogenase family NAD binding domain, PF00984: UDP-glucose/GDP-mannose dehydrogenase family central domain, PF03720: UDP-glucose/GDP-mannose dehydrogenase family UDP binding domain" 1 14 17 At3g29400 exocyst subunit EXO70 family protein similar to EXO70 protein (GI:2352998) [Mus musculus]; contains Pfam domain PF03081: Exo70 exocyst complex subunit 1 14 18 At3g29660 hypothetical protein 1 14 19 At3g29720 "transferase-related low similarity to anthocyanin 5-aromatic acyltransferase from Gentiana triflora GI:4185599, malonyl CoA:anthocyanin 5-O-glucoside-6'''-O-malonyltransferase from Perilla frutescens GI:17980232, Salvia splendens GI:17980234" 1 14 20 At3g43770 hypothetical protein 1 14 21 At3g43840 expressed protein 1 14 22 At3g44040 expressed protein 1 14 23 At3g44100 MD-2-related lipid recognition domain-containing protein / ML domain-containing protein contains Pfam profile PF02221: ML domain 1 14 24 At3g44240 "CCR4-NOT transcription complex protein, putative similar to SWISS-PROT:Q60809 CCR4-NOT transcription complex, subunit 7 (CCR4-associated factor 1, (CAF1) [Mus musculus]" 1 14 25 At3g44310 nitrilase 1 (NIT1) identical to SP|P32961 Nitrilase 1 (EC 3.5.5.1) {Arabidopsis thaliana} 1 15 1 At3g44520 esterase/lipase/thioesterase family protein similar to SP|Q02104 Lipase 1 precursor (EC 3.1.1.3) (Triacylglycerol lipase) {Psychrobacter immobilis}; contains Interpro entry IPR000379 1 15 2 At3g44580 "hypothetical protein predicted protein, Arabidopsis thaliana" 1 15 3 At3g47450 expressed protein 1 15 4 At3g47490 HNH endonuclease domain-containing protein contains Pfam domain PF01844: HNH endonuclease 1 15 5 At3g47630 expressed protein 1 15 6 At3g47680 expressed protein contains similarity to hypothetical proteins of [Arabidopsis thaliana] 1 15 7 At3g47836 expressed protein 1 15 8 At3g47900 ubiquitin carboxyl-terminal hydrolase family protein contains Pfam profile PF00443: Ubiquitin carboxyl-terminal hydrolase 1 15 9 At3g48060 bromo-adjacent homology (BAH) domain-containing protein contains Pfam profile PF01426: BAH domain 1 15 10 At3g48120 expressed protein 1 15 11 At3g51010 expressed protein 1 15 12 At3g51060 "zinc finger protein, putative / lateral root primordium (LRP) protein-related similar to lateral root primordium 1 (LRP1) [Arabidopsis thaliana] GI:882341; contains Pfam profile PF05142: Domain of unknown function (DUF702)" 1 15 13 At3g51230 hypothetical protein 1 15 14 At3g51290 proline-rich family protein 1 15 15 At3g51450 "strictosidine synthase family protein similar to hemomucin [Drosophila melanogaster][GI:1280434], strictosidine synthase [Rauvolfia serpentina][SP|P15324]" 1 15 16 At3g51510 expressed protein 1 15 17 At3g51670 "SEC14 cytosolic factor family protein / phosphoglyceride transfer family protein similar to polyphosphoinositide binding protein Ssh2p (GI:2739046) {Glycine max};; contains Pfam PF00650 : CRAL/TRIO domain; contains Pfam PF03765 : CRAL/TRIO, N-terminus" 1 15 18 At3g51730 "saposin B domain-containing protein contains Pfam profiles: PF00026 eukaryotic aspartyl protease, PF03489 surfactant protein B, PF05184 saposin-like type B, region 1" 1 15 19 At3g54200 "expressed protein hin1 protein, Nicotiana tabacum, PIR:T03265" 1 15 20 At3g54260 "expressed protein various predicted proteins, Arabidopsis thaliana" 1 15 21 At3g54430 lateral root primordium (LRP) protein-related similar to lateral root primordium 1 (LRP1) [Arabidopsis thaliana] GI:882341; contains Pfam profile PF05142: Domain of unknown function (DUF702) 1 15 22 At3g54480 SKP1 interacting partner 5 (SKIP5) identical to GP:14348816 SKP1-interacting partner 5 {Arabidopsis thaliana} 1 15 23 At3g54640 "tryptophan synthase, alpha subunit (TSA1) identical to gi:619753" 1 15 24 At3g54700 "phosphate transporter, putative strong similarity to phosphate transporter (AtPT2) [Arabidopsis thaliana] GI:1502430" 1 15 25 At3g54870 "armadillo/beta-catenin repeat family protein / kinesin motor family protein kinesin, Syncephalastrum racemosum, AJ225894" 1 16 1 At3g54900 "CAX-interacting protein 1 (CAXIP1) identical to cDNA CAXIP1 protein (CAXIP1) GI:27752304, CAXIP1 protein [Arabidopsis thaliana] GI:27752305" 1 16 2 At3g57700 "protein kinase, putative contains protein kinase domain, Pfam:PF00069" 1 16 3 At3g57760 protein kinase family protein contains similarity to protein kinases 1 16 4 At3g57910 D111/G-patch domain-containing protein contains Pfam profile PF01585: G-patch domain 1 16 5 At3g57970 emsy N terminus domain-containing protein / ENT domain-containing protein contains Pfam profile PF03735: ENT domain 1 16 6 At3g58160 "myosin heavy chain, putative similar to myosin heavy chain [Arabidopsis thaliana] gi|602328|emb|CAA84067." 1 16 7 At3g58220 meprin and TRAF homology domain-containing protein / MATH domain-containing protein weak similarity to ubiquitin-specific protease 12 [Arabidopsis thaliana] GI:11993471; contains Pfam profile PF00917: MATH domain 1 16 8 At3g58400 meprin and TRAF homology domain-containing protein / MATH domain-containing protein weak similarity to ubiquitin-specific protease 12 [Arabidopsis thaliana] GI:11993471; contains Pfam PF00917: MATH domain 1 16 9 At3g58450 universal stress protein (USP) family protein contains Pfam PF00582: universal stress protein family 1 16 10 At3g61180 "zinc finger (C3HC4-type RING finger) family protein low similarity to RNF6 protein [Mus musculus] GI:20530241; contains Pfam profile PF00097: Zinc finger, C3HC4 type (RING finger)" 1 16 11 At3g61240 "DEAD/DEAH box helicase, putative (RH12) identical to cDNA DEAD box RNA helicase, RH12 GI:3776000" 1 16 12 At3g61390 U-box domain-containing protein several hypothetical proteins - Arabidopsis thaliana 1 16 13 At3g61440 "cysteine synthase, putative / O-acetylserine (thiol)-lyase, putative / O-acetylserine sulfhydrylase, putative identical to cysteine synthase (EC 4.2.99.8) [Arabidopsis thaliana] GI:5824334; contains Pfam profile PF00291: Pyridoxal-phosphate dependent enzyme" 1 16 14 At3g61600 BTB/POZ domain-containing protein contains Pfam PF00651: BTB/POZ domain; contains Interpro IPR000210/ PS50097: BTBB/POZ domain; similar to POZ/BTB containing-protein AtPOB1 (GI:12006855) [Arabidopsis thaliana]; similar to actinfilin (GI:21667852) [Rattus norvegicus] 1 16 15 At3g61660 hypothetical protein 1 16 16 At3g61820 "aspartyl protease family protein contains Pfam domain, PF00026: eukaryotic aspartyl protease" 1 16 17 At3g61870 "expressed protein hypothetical protein - Synechocystis sp. (strain PCC 6803), PIR:S75899" 1 16 18 At4g00810 60S acidic ribosomal protein P1 (RPP1B) similar to acidic ribosomal protein p1 1 16 19 At4g00860 stress-related ozone-induced protein (OZI1) / stress-related ozone-responsive protein identical to stress-related ozone-induced protein AtOZI1 (mRNA corresponding to this gene accumulates in response to ozone stress and pathogen (bacterial) infection); putative pathogenesis-related protein (GI:790583) [Arabidopsis thaliana] 1 16 20 At4g01010 "cyclic nucleotide-regulated ion channel, putative (CNGC13) similar to CaM-regulated potassium ion channel (ACBK1) GI:8515883 from [Arabidopsis thaliana]" 1 16 21 At4g01050 hydroxyproline-rich glycoprotein family protein 1 16 22 At4g01220 expressed protein 1 16 23 At4g01245 hypothetical protein 1 16 24 At4g01430 nodulin MtN21 family protein similar to MtN21 GI:2598575 (root nodule development) from [Medicago truncatula] 1 16 25 At4g01460 basic helix-loop-helix (bHLH) family protein contains Pfam profile: PF00010 helix-loop-helix DNA-binding domain 1 17 1 At4g04260 bromo-adjacent homology (BAH) domain-containing protein similar to ES43 [Hordeum vulgare] GI:1345528; contains Pfam profile PF01426: BAH domain 1 17 2 At4g04360 hypothetical protein 1 17 3 At4g04530 "Ulp1 protease family protein (snoR29) contains Pfam profile PF02902: Ulp1 protease family, C-terminal catalytic domain; snoR29 gene for small nucleolar RNA GI:15706258" 1 17 4 At4g04620 "autophagy 8b (APG8b) identical to autophagy 8b [Arabidopsis thaliana] GI:19912153; contains Pfam profile PF02991: Microtubule associated protein 1A/1B, light chain 3" 1 17 5 At4g04770 ATP-binding-cassette transporter (ABC1) Identical to the protein described in PMID:11156608 and note that sequence was not deposited into GenBank by the authors. 1 17 6 At4g04830 "methionine sulfoxide reductase domain-containing protein / SeIR domain-containing protein low similarity to pilin-like transcription factor [Homo sapiens] GI:5059062, SP|P14930 Peptide methionine sulfoxide reductase msrA/msrB (EC 1.8.4.6) {Neisseria gonorrhoeae}; contains Pfam profile PF01641: SelR domain" 1 17 7 At4g04980 "hydroxyproline-rich glycoprotein family protein Common family members: At4g18570, At3g25690, At5g61090 [Arabidopsis thaliana]" 1 17 8 At4g05010 F-box family protein contains Pfam PF00646: F-box domain; similar to late embryogenesis abundant protein (GI:1350541) (PIR|T09287) {Picea glauca} 1 17 9 At4g09740 "glycosyl hydrolase family 9 protein similar to endo-beta-1,4-glucanase; cellulase GI:1655543 from [Capsicum annuum]" 1 17 10 At4g09780 meprin and TRAF homology domain-containing protein / MATH domain-containing protein low similarity to ubiquitin-specific protease 12 [Arabidopsis thaliana] GI:11993471; contains Pfam profile PF00917: MATH domain 1 17 11 At4g09960 MADS-box protein (AGL11) 1 17 12 At4g09980 "methyltransferase MT-A70 family protein low similarity to SP|P25583 Karyogamy protein KAR4 {Saccharomyces cerevisiae}, (N6-adenosine)-methyltransferase [Mus musculus] GI:10179948; contains Pfam profile PF05063: MT-A70 (S-adenosylmethionine-binding subunit of human mRNA:m6A methyl-transferase (MTase))" 1 17 13 At4g10140 expressed protein 1 17 14 At4g10180 light-mediated development protein 1 / deetiolated1 (DET1) identical to Light-mediated development protein DET1 (Deetiolated1) (Swiss-Prot:P48732) [Arabidopsis thaliana] 1 17 15 At4g10350 "no apical meristem (NAM) family protein contains Pfam PF02365: No apical meristem (NAM) domain; nap gene, Arabidopsis thaliana, gb:AJ222713" 1 17 16 At4g10410 hypothetical protein 1 17 17 At4g13220 expressed protein 1 17 18 At4g13261 hypothetical protein 1 17 19 At4g13380 heavy-metal-associated domain-containing protein low similarity to wound-responsive gene KED [Nicotiana tabacum] GI:8096269; contains Pfam profile PF00403: Heavy-metal-associated domain 1 17 20 At4g13440 "calcium-binding EF hand family protein low similarity to Polcalcin (Calcium-binding pollen allergen) from {Phleum pratense} SP|O82040, {Cynodon dactylon} SP|P94092; contains INTERPRO:IPR002048 calcium-binding EF-hand domain" 1 17 21 At4g13600 glycosyl hydrolase family protein 17 similar to elicitor inducible chitinase Nt-SubE76 GI:11071974 from [Nicotiana tabacum] 1 17 22 At4g13650 pentatricopeptide (PPR) repeat-containing protein contains Pfam profile PF01535: PPR repeat 1 17 23 At4g13810 "disease resistance family protein / LRR family protein contains leucine rich-repeat domains Pfam:PF00560, INTERPRO:IPR001611; similar to disease resistance protein [Lycopersicon esculentum] gi|3894383|gb|AAC78591" 1 17 24 At4g13850 glycine-rich RNA-binding protein (GRP2) glycine-rich RNA binding protein 2 AtGRP2 [Arabidopsis thaliana] GI:2826811 1 17 25 At4g16195 self-incompatibility protein-related similar to S1 self-incompatibility protein [Papaver rhoeas] GI:452430 1 18 1 At4g16240 hypothetical protein 1 18 2 At4g16410 expressed protein contains Pfam PF05421: Protein of unknown function (DUF751) 1 18 3 At4g16447 expressed protein 1 18 4 At4g16570 protein arginine N-methyltransferase-related contains weak similarity to protein arginine N-methyltransferase 2 (EC 2.1.1.-) (Swiss-Prot:P55345) [Homo sapiens] 1 18 5 At4g16630 "DEAD/DEAH box helicase, putative (RH28) identical to cDNA DEAD box RNA helicase, RH28 GI:3776026" 1 18 6 At4g16750 "DRE-binding transcription factor, putative similar to DRE binding factor 2 [Zea mays] GI:21908034; contains Pfam profile PF00847: AP2 domain" 1 18 7 At4g16780 homeobox-leucine zipper protein 4 (HAT4) / HD-ZIP protein 4 SP|Q05466|HAT4_ARATH Homeobox-leucine zipper protein HAT4 (HD-ZIP protein 4) (SP:Q05466) [Arabidopsis thaliana] (HD-ZIP homeotic protein Athb-2 1 18 8 At4g19330 "kelch repeat-containing F-box family protein very low similarity to SKP1 interacting partner 6 [Arabidopsis thaliana] GI:10716957; contains Pfam profiles PF01344: Kelch motif, PF00646: F-box domain" 1 18 9 At4g19390 expressed protein 1 18 10 At4g19550 expressed protein 1 18 11 At4g19610 RNA recognition motif (RRM)-containing protein contains InterPro entry IPR000504: RNA-binding region RNP-1 (RNA recognition motif) (RRM) 1 18 12 At4g19750 "glycosyl hydrolase family 18 protein similar to chitinase, class V GI:899342 from [Nicotiana tabacum]" 1 18 13 At4g19830 "immunophilin / FKBP-type peptidyl-prolyl cis-trans isomerase family protein similar to 70 kDa peptidylprolyl isomerase (Peptidylprolyl cis-trans isomerase) (PPiase) (Rotamase) (SP:Q43207) [Triticum aestivum]; FKBP-type peptidyl-prolyl cis-trans isomerase,Synechocystis sp., PIR2:S75144; contains Pfam PF00254: peptidyl-prolyl cis-trans isomerase, FKBP-type" 1 18 14 At4g19985 "GCN5-related N-acetyltransferase (GNAT) family protein contains Pfam profile PF00583: acetyltransferase, GNAT family" 1 18 15 At4g20020 expressed protein 1 18 16 At4g22830 expressed protein 1 18 17 At4g22890 expressed protein 1 18 18 At4g23040 UBX domain-containing protein similar to Ara4-interacting protein [Arabidopsis thaliana] GI:13160609; contains Pfam profile PF00789: UBX domain 1 18 19 At4g23100 glutamate-cysteine ligase / gamma-glutamylcysteine synthetase (GSH1) identical to glutamate-cysteine ligase SP:P46309 from [Arabidopsis thaliana]; contains Pfam profile: PF04107 glutamate-cysteine ligase family 2(GCS2) 1 18 20 At4g23250 protein kinase family protein contains Pfam domain PF00069: Protein kinase domain 1 18 21 At4g23300 "protein kinase family protein contains Pfam domain, PF00069: Protein kinase domain" 1 18 22 At4g23470 "hydroxyproline-rich glycoprotein family protein contains proline-rich extensin domains, INTERPRO:IPR002965" 1 18 23 At4g23500 glycoside hydrolase family 28 protein / polygalacturonase (pectinase) family protein weak similarity to SP|P27644 Polygalacturonase (EC 3.2.1.15) (Pectinase) {Agrobacterium tumefaciens}; contains PF00295: Glycosyl hydrolases family 28 1 18 24 At4g26080 protein phosphatase 2C ABI1 / PP2C ABI1 / abscisic acid-insensitive 1 (ABI1) nearly identical to SP|P49597 Protein phosphatase 2C ABI1 (EC 3.1.3.16) (PP2C) (Abscisic acid- insensitive 1) {Arabidopsis thaliana} 1 18 25 At4g26120 "ankyrin repeat family protein / BTB/POZ domain-containing protein contains Pfam domain, PF00023: Ankyrin repeat and Pfam domain, PF00651: BTB/POZ domain" 1 19 1 At4g26270 phosphofructokinase family protein similar to phosphofructokinase [Amycolatopsis methanolica] GI:17432243; contains Pfam profile PF00365: Phosphofructokinase 1 19 2 At4g26330 "subtilase family protein contains similarity to SBT1, a subtilase from tomato plants GI:1771160 from [Lycopersicon esculentum]" 1 19 3 At4g26480 "KH domain-containing protein qkI-7, Mus musculus" 1 19 4 At4g26520 "fructose-bisphosphate aldolase, cytoplasmic identical to SP|P22197 Fructose-bisphosphate aldolase, cytoplasmic isozyme (EC 4.1.2.13) {Arabidopsis thaliana}" 1 19 5 At4g26660 expressed protein weak similarity to phragmoplast-associated kinesin-related protein 1 [Arabidopsis thaliana] GI:8745333 1 19 6 At4g26710 ATP synthase subunit H family protein contains similarity to Swiss-Prot:O15342 Vacuolar ATP synthase subunit H (V-ATPase H subunit) (Vacuolar proton pump H subunit) (V-ATPase M9.2 subunit) (V-ATPase 9.2 kDa membrane accessory protein) [Homo sapiens] 1 19 7 At4g29290 hypothetical protein 1 19 8 At4g29360 glycosyl hydrolase family 17 protein similar to elicitor inducible chitinase Nt-SubE76 GI:11071974 from [Nicotiana tabacum] 1 19 9 At4g29520 expressed protein 1 19 10 At4g29580 "cytidine deaminase, putative / cytidine aminohydrolase, putative identical to cytidine deaminase homolog DesB [Arabidopsis thaliana] GI:4836444, cytidine deaminase 9 (CDA9) [Arabidopsis thaliana] GI:5080715; similar to cytidine deaminase (CDD) [Arabidopsis thaliana] GI:3046700; contains Pfam profile PF00383: Cytidine and deoxycytidylate deaminase zinc-binding" 1 19 11 At4g29735 expressed protein contains Pfam domain PF05251: Uncharacterised protein family (UPF0197) 1 19 12 At4g29780 expressed protein 1 19 13 At4g29930 basic helix-loop-helix (bHLH) family protein contains Pfam profile: PF00010 helix-loop-helix DNA-binding domain 1 19 14 At4g29990 light repressible receptor protein kinase identical to light repressible receptor protein kinase [Arabidopsis thaliana] gi|1321686|emb|CAA66376 1 19 15 At4g32490 plastocyanin-like domain-containing protein 1 19 16 At4g32551 "WD-40 repeat family protein (LEUNIG) contains seven G-protein beta WD-40 repeats; beta transducin-like protein, Podospora anserina, gb:L28125; contains Pfam profiles PF04503: Single-stranded DNA binding protein, SSDP; PF00400:WD domain, G-beta repeat; identical to cDNA LEUNIG (LEUNIG) GI:11141604" 1 19 17 At4g32680 expressed protein 1 19 18 At4g32760 "VHS domain-containing protein / GAT domain-containing protein weak similarity to hepatocyte growth factor-regulated tyrosine kinase substrate HRS isoform 2 [Homo sapiens] GI:9022389; contains Pfam profiles PF00790: VHS domain, PF03127: GAT domain" 1 19 19 At4g32890 "zinc finger (GATA type) family protein GATA transcription factor 3, Arabidopsis thaliana, gb:Y13650" 1 19 20 At4g32920 glycine-rich protein 1 19 21 At4g33080 "protein kinase, putative contains protein kinase domain, Pfam:PF00069" 1 19 22 At4g33130 expressed protein weak similarity to Max-interacting transcriptional repressor [Mus musculus] GI:1184157 1 19 23 AT5G57480 PC-1 1 19 24 3XSSC PC-1 1 19 25 AT1G29930 PC-1 1 20 1 3XSSC PC-1 1 20 2 AT3G44150 PC-1 1 20 3 3XSSC PC-1 1 20 4 AT4G00810 PC-1 1 20 5 3XSSC PC-1 1 20 6 At4g35740 "DNA helicase (RECQl3) identical to DNA Helicase [Arabidopsis thaliana] GI:11121447; contains Pfam profiles PF00270: DEAD/DEAH box helicase, PF00271: Helicase conserved C-terminal domain" 1 20 7 At4g35785 "transformer serine/arginine-rich ribonucleoprotein, putative similar to transformer-SR ribonucleoprotein [Nicotiana tabacum] gi|1781299|emb|CAA70700" 1 20 8 At4g35920 "expressed protein contains Pfam profile PF04749: Protein of unknown function, DUF614; isoform contains AT-acceptor splice site at intron 8" 1 20 9 At4g35985 senescence/dehydration-associated protein-related similar to senescence-associated protein 12 [Hemerocallis hybrid cultivar] gi|3551958|gb|AAC34857; similar to early-responsive to dehydration stress ERD7 protein [Arabidopsis thaliana] gi|15320412|dbj|BAB63916 1 20 10 At4g36105 expressed protein 1 20 11 At4g36160 no apical meristem (NAM) family protein similar to NAC2 (GI:6456751) [Arabidopsis thaliana]; contains Pfam PF02365 : No apical meristem (NAM) protein 1 20 12 At4g36360 "beta-galactosidase, putative / lactase, putative similar to beta-galactosidase precursor SP:P48980 from [Lycopersicon esculentum]" 1 20 13 At4g36400 "FAD linked oxidase family protein low similarity to SP|Q12627 from Kluyveromyces lactis and SP|P32891 from Saccharomyces cerevisiae; contains Pfam FAD linked oxidases, C-terminal domain PF02913, Pfam FAD binding domain PF01565" 1 20 14 At4g39050 "kinesin-related protein (MKRP2) kinesin motor protein - Ustilago maydis, PID:g2062750; identical to cDNA MKRP2 mRNA for kinesin-related protein GI:16902293, kinesin-related protein [Arabidopsis thaliana] GI:16902294" 1 20 15 At4g39110 "protein kinase family protein contains protein kinase domain, Pfam:PF00069" 1 20 16 At4g39260 glycine-rich RNA-binding protein 8 (GRP8) (CCR1) SP|Q03251 Glycine-rich RNA-binding protein 8 (CCR1 protein) (GRP8) {Arabidopsis thaliana} isoform contains a non-consensus CG acceptor splice site at intron 2 1 20 17 At4g39280 "phenylalanyl-tRNA synthetase, putative / phenylalanine--tRNA ligase, putative similar to SP|Q9Y285 Phenylalanyl-tRNA synthetase alpha chain (EC 6.1.1.20) (Phenylalanine- -tRNA ligase alpha chain) (PheRS) {Homo sapiens}; contains Pfam profile PF01409: tRNA synthetases class II core domain (F)" 1 20 18 At4g39410 WRKY family transcription factor identical to WRKY transcription factor 13 GI:15991729 from [Arabidopsis thaliana] 1 20 19 At4g39470 chloroplast lumen common family protein 1 20 20 At4g39630 expressed protein 1 20 21 At4g39680 SAP domain-containing protein contains Pfam domain PF02037: SAP domain 1 20 22 At5g03190 expressed protein 1 20 23 At5g03250 "phototropic-responsive NPH3 family protein contains some similarity to root phototropism RPT2 [Arabidopsis thaliana] gi|6959488|gb|AAF33112, a signal transducer of phototropic response PMID:10662859" 1 20 24 At5g03420 dentin sialophosphoprotein-related contains weak similarity to Swiss-Prot:Q9NZW4 dentin sialophosphoprotein precursor [Homo sapiens] 1 20 25 At5g03450 zinc finger (C3HC4-type RING finger) family protein 1 21 1 At5g03600 GDSL-motif lipase/hydrolase family protein low similarity to family II lipase EXL3 [Arabidopsis thaliana] GI:15054386; contains Pfam profile PF00657: GDSL-like Lipase/Acylhydrolase 1 21 2 At5g03660 expressed protein low similarity to outer surface protein F [Borrelia burgdorferi] GI:466482; contains Pfam profile PF04949: Family of unknown function (DUF662) 1 21 3 At5g03840 terminal flower 1 protein (TFL1) identical go SP|P93003 TERMINAL FLOWER 1 protein {Arabidopsis thaliana}; contains Pfam profile PF01161: Phosphatidylethanolamine-binding protein 1 21 4 At5g03900 "expressed protein predicted protein, Synechocystis sp., PIR:S74969" 1 21 5 At5g06490 "zinc finger (C3HC4-type RING finger) family protein low similarity to RING-H2 finger protein ATL6 [Arabidopsis thaliana] GI:4928403; contains Pfam profile PF00097: Zinc finger, C3HC4 type (RING finger)" 1 21 6 At5g06530 ABC transporter family protein 1 21 7 At5g06710 homeobox-leucine zipper protein 14 (HAT14) / HD-ZIP protein 14 contains similarity to homeodomain leucine zipper protein 1 21 8 At5g06760 late embryogenesis abundant group 1 domain-containing protein / LEA group 1 domain-containing protein low similarity to SP|P46515 11 kDa late embryogenesis abundant protein (DS11) {Helianthus annuus}; contains Pfam profile PF03760: Late embryogenesis abundant (LEA) group 1 1 21 9 At5g06930 expressed protein 1 21 10 At5g06980 expressed protein 1 21 11 At5g07130 "laccase, putative / diphenol oxidase, putative similar to laccase [Populus balsamifera subsp. trichocarpa][GI:3805960]" 1 21 12 At5g07190 "embryo-specific protein 3, putative similar to embryo-specific protein 3 GI:3335171 from [Arabidopsis thaliana]" 1 21 13 At5g10290 leucine-rich repeat family protein / protein kinase family protein contains Pfam domains PF00560: Leucine Rich Repeat and PF00069: Protein kinase domain 1 21 14 At5g10350 "polyadenylate-binding protein family protein / PABP family protein contains weak similarity to poly(A) binding protein II from [Mus musculus] GI:2351846, [Xenopus laevis] GI:11527140; contains InterPro entry IPR000504: RNA-binding region RNP-1 (RNA recognition motif) (RRM)" 1 21 15 At5g10510 "ovule development protein, putative similar to ovule development protein aintegumenta (GI:1209099) [Arabidopsis thaliana]" 1 21 16 At5g10570 "basic helix-loop-helix (bHLH) family protein bHLH transcription factor, Arabidopsis thaliana, EMBL:AC005167" 1 21 17 At5g10710 expressed protein 1 21 18 At5g10750 expressed protein 1 21 19 At5g10930 CBL-interacting protein kinase 5 (CIPK5) identical to CBL-interacting protein kinase 5 GP|9280632|gb|AAF86504 [Arabidopsis thaliana] 1 21 20 At5g10990 auxin-responsive family protein similar to GP:10185818 auxin-induced protein TGSAUR21 {Tulipa gesneriana) 1 21 21 At5g14105 expressed protein 1 21 22 At5g14160 F-box family protein contains F-box domain Pfam:PF00646 1 21 23 At5g14340 myb family transcription factor (MYB40) contains Pfam profile: PF00249 myb-like DNA-binding domain 1 21 24 At5g14400 cytochrome P450 family protein similar to steroid 22-alpha-hydroxylase; DWF4; CYP90B1 (GI:2935342) [Arabidopsis thaliana] 1 21 25 At5g14560 expressed protein 1 22 1 At5g14600 expressed protein 1 22 2 At5g14780 formate dehydrogenase (FDH) identical to GI:7677266 1 22 3 At5g14850 "mannosyltransferase, putative similar to PIGB from Homo sapiens [gi:1552169], Mus musculus [gi:7634741]" 1 22 4 At5g17530 phosphoglucosamine mutase family protein low similarity to phosphoglucomutase/phosphomannomutase [Sphingomonas paucimobilis] GI:6103619; contains InterPro accession IPR006352: Phosphoglucosamine mutase 1 22 5 At5g17580 "phototropic-responsive NPH3 family protein contains NPH3 family domain, Pfam:PF03000" 1 22 6 At5g17740 "AAA-type ATPase family protein h-bcs1, Homo sapiens, EMBL:AF026849 h-bcs1, Homo sapiens, EMBL:AF026849 h-bcs1, Homo sapiens, EMBL:AF026849 contains Pfam profile: ATPase family PF00004 gene_id:K17E7.100 contains Pfam profile: ATPase family PF00004" 1 22 7 At5g17780 "hydrolase, alpha/beta fold family protein low similarity to SP|Q02104 Lipase 1 precursor (EC 3.1.1.3) (Triacylglycerol lipase) {Psychrobacter immobilis}, SP|P27747|ACOC_ALCEU Dihydrolipoamide acetyltransferase component of acetoin cleaving system (EC 2.3.1.12) [Ralstonia eutropha] {Alcaligenes eutrophus}; contains Pfam profile PF00561: hydrolase, alpha/beta fold family" 1 22 8 At5g17970 "disease resistance protein (TIR-NBS-LRR class), putative domain signature TIR-NBS-LRR exists, suggestive of a disease resistance protein." 1 22 9 At5g18030 "auxin-responsive protein, putative similar to auxin-inducible SAUR (Small Auxin Up RNAs) (GI:3043536) [Raphanus sativus]" 1 22 10 At5g18180 Gar1 RNA-binding region family protein contains Pfam profile PF04410: Gar1 protein RNA binding region 1 22 11 At5g18240 myb family transcription factor contains Pfam profile: PF00249 myb-like DNA-binding domain 1 22 12 At5g20810 "auxin-responsive protein, putative / small auxin up RNA (SAUR_B) similar to indole-3-acetic acid induced protein ARG7 SP:P32295 from [Phaseolus aureus]" 1 22 13 At5g20870 glycosyl hydrolase family 17 protein similar to elicitor inducible chitinase Nt-SubE76 GI:11071974 [Nicotiana tabacum] 1 22 14 At5g21020 expressed protein 1 22 15 At5g21080 expressed protein predicted proteins - Arabidopsis thaliana; expression supported by MPSS 1 22 16 At5g21910 expressed protein ; expression supported by MPSS 1 22 17 At5g21970 expressed protein supported by full-length cDNA gi:22531216 from [Arabidopsis thaliana] 1 22 18 At5g22110 DNA polymerase epsilon subunit B family contains Pfam profile: PF04042 DNA polymerase epsilon subunit B 1 22 19 At5g22150 hypothetical protein 1 22 20 At5g24790 "expressed protein contains Pfam profile PF04654: Protein of unknown function, DUF599" 1 22 21 At5g24850 cryptochrome dash (CRYD) nearly identical to cryptochrome dash [Arabidopsis thaliana] GI:28971609; similar to Deoxyribodipyrimidine photolyase (DNA photolyase) (Photoreactivating enzyme)(SP:Q55081){Synechocystis sp.} 1 22 22 At5g25020 expressed protein 1 22 23 At5g25080 expressed protein 1 22 24 At5g25260 expressed protein 1 22 25 At5g25300 "F-box family protein PF0064: F-box domain; similar to F-box protein family, AtFBX7 (GI:20197899) [Arabidopsis thaliana]" 1 23 1 At5g25440 "protein kinase family protein contains protein kinase domain, Pfam:PF00069" 1 23 2 At5g25475 expressed protein 1 23 3 At5g28470 proton-dependent oligopeptide transport (POT) family protein contains Pfam profile: PF00854 POT family 1 23 4 At5g28510 glycosyl hydrolase family 1 protein contains Pfam PF00232 : Glycosyl hydrolase family 1 domain; TIGRFAM TIGR01233: 6-phospho-beta-galactosidase; similar to beta-glucosidase 1 (GI:12043529) [Arabidopsis thaliana] 1 23 5 At5g28680 "protein kinase family protein contains protein kinase domain, Pfam:PF00069" 1 23 6 At5g28760 "hypothetical protein contains Pfam profile PF03384: Drosophila protein of unknown function, DUF287" 1 23 7 At5g28910 expressed protein 1 23 8 At5g28970 "Ulp1 protease family protein contains Pfam profile PF02902: Ulp1 protease family, C-terminal catalytic domain" 1 23 9 At5g30495 expressed protein 1 23 10 At5g30500 "galactinol synthase, putative similar to galactinol synthase, isoform GolS-1 GI:5608497 from [Ajuga reptans]" 1 23 11 At5g37480 expressed protein 1 23 12 At5g37520 "hypothetical protein predicted proteins, Arabidopsis thaliana" 1 23 13 At5g37710 "lipase class 3 family protein / calmodulin-binding heat-shock protein, putative similar to almodulin-binding heat-shock protein, common tobacco, PIR:T04107; contains Pfam profiles PF03893: Lipase 3 N-terminal region, PF01764: Lipase" 1 23 14 At5g37770 "touch-responsive protein / calmodulin-related protein 2, touch-induced (TCH2) identical to calmodulin-related protein 2,touch-induced SP:P25070 from [Arabidopsis thaliana]" 1 23 15 At5g37950 hypothetical protein 1 23 16 At5g38010 UDP-glucoronosyl/UDP-glucosyl transferase family protein contains Pfam profile: PF00201 UDP-glucoronosyl and UDP-glucosyl transferase 1 23 17 At5g38180 protease inhibitor/seed storage/lipid transfer protein (LTP) family protein contains Pfam profile: PF00234 protease inhibitor/seed storage/LTP family 1 23 18 At5g38220 expressed protein 1 23 19 At5g41080 glycerophosphoryl diester phosphodiesterase family protein weak similarity to SP|P37965 Glycerophosphoryl diester phosphodiesterase (EC 3.1.4.46) {Bacillus subtilis}; contains Pfam profile PF03009: Glycerophosphoryl diester phosphodiesterase family 1 23 20 At5g41120 esterase/lipase/thioesterase family protein contains Interpro entry IPR000379 1 23 21 At5g41310 kinesin motor protein-related 1 23 22 At5g41360 "DNA repair protein and transcription factor, putative (XPB2) similar to SP|P49135 TFIIH basal transcription factor complex helicase XPB subunit (EC 3.6.1.-) (Basic transcription factor 2 89 kDa subunit) {Mus musculus}; contains Pfam profile PF00271: Helicase conserved C-terminal domain; contains TIGRfam profile TIGR00603: DNA repair helicase rad25" 1 23 23 At5g41540 "disease resistance protein (TIR-NBS-LRR class), putative domain signature TIR-NBS-LRR exists, suggestive of a disease resistance protein." 1 23 24 At5g41600 "reticulon family protein (RTNLB4) weak similarity to Nogo-C protein [Rattus norvegicus] GI:6822251, SP|O95197 Reticulon protein 3 (Neuroendocrine-specific protein-like) {Homo sapiens}; contains Pfam profile PF02453: Reticulon" 1 23 25 At5g41740 "disease resistance protein (TIR-NBS-LRR class), putative domain signature TIR-NBS-LRR exists, suggestive of a disease resistance protein." 1 24 1 At5g41790 COP1-interactive protein 1 / CIP1 almost identical to CIP1 (GI:836950) [Arabidopsis thaliana] 1 24 2 At5g44440 FAD-binding domain-containing protein similar to SP|P30986 reticuline oxidase precursor (Berberine-bridge-forming enzyme) (BBE) (Tetrahydroprotoberberine synthase) [Eschscholzia californica]; contains PF01565 FAD binding domain 1 24 3 At5g44500 "small nuclear ribonucleoprotein associated protein B, putative / snRNP-B, putative / Sm protein B, putative similar to SP|P27048 Small nuclear ribonucleoprotein associated protein B (snRNP-B) (Sm protein B) (Sm-B) (SmB) {Mus musculus}" 1 24 4 At5g44650 expressed protein 1 24 5 At5g44710 expressed protein similar to unknown protein (ref|NP_011731.1) 1 24 6 At5g44840 glycoside hydrolase family 28 protein / polygalacturonase (pectinase) family protein similar to polygalacturonase [Persea americana] GI:166951; contains PF00295: Glycosyl hydrolases family 28 (polygalacturonases) 1 24 7 At5g44910 "Toll-Interleukin-Resistance (TIR) domain-containing protein domain signature TIR exists, suggestive of a disease resistance protein." 1 24 8 At5g45060 "disease resistance protein (TIR-NBS-LRR class), putative domain signature TIR-NBS-LRR exists, suggestive of a disease resistance protein." 1 24 9 At5g45100 expressed protein 1 24 10 At5g47635 expressed protein 1 24 11 At5g47690 expressed protein 1 24 12 At5g47830 expressed protein 1 24 13 At5g47890 "NADH-ubiquinone oxidoreductase B8 subunit, putative similar to SP|O43678 NADH-ubiquinone oxidoreductase B8 subunit (EC 1.6.5.3) (EC 1.6.99.3) (Complex I-B8) (CI-B8) {Homo sapiens}; contains Pfam profile PF05047: Mitochondrial ribosomal protein L51 / S25 / CI-B8 domain" 1 24 14 At5g48070 "xyloglucan:xyloglucosyl transferase, putative / xyloglucan endotransglycosylase, putative / endo-xyloglucan transferase, putative similar to xyloglucan endotransglycosylase TCH4 GI:886116 from [Arabidopsis thaliana] " 1 24 15 At5g48130 "phototropic-responsive NPH3 family protein contains NPH3 family domain, Pfam:PF03000" 1 24 16 At5g48300 glucose-1-phosphate adenylyltransferase small subunit 1 (APS1) / ADP-glucose pyrophosphorylase (ADG1) identical to SP|P55228 1 24 17 At5g48350 hypothetical protein 1 24 18 At5g51030 short-chain dehydrogenase/reductase (SDR) family protein contains INTERPRO family IPR002198 short chain dehydrogenase/reductase SDR family 1 24 19 At5g51090 hypothetical protein 1 24 20 At5g51230 embryonic flower 2 (EMF2) identical to embryonic flower 2 [Arabidopsis thaliana] GI:14276050; supporting cDNA gi|14276049|dbj|AB053171.1| 1 24 21 At5g51280 "DEAD-box protein abstrakt, putative " 1 24 22 At5g51440 "23.5 kDa mitochondrial small heat shock protein (HSP23.5-M) similar to heat shock 22 kDa protein, mitochondrial precursor SP:Q96331 from [Arabidopsis thaliana]; identified in Scharf, K-D., et al,Cell Stress & Chaperones (2001) 6: 225-237." 1 24 23 At5g51500 pectinesterase family protein contains Pfam profile: PF01095 pectinesterase 1 24 24 At5g51640 leaf senescence protein-related (YLS7 ) annotation temporarily based on supporting cDNA gi|13122291|dbj|AB047810.1|; identical to cDNA YLS7 leaf-senescence-related protein GI:13122291 1 24 25 At5g51700 RAR1 disease resistance protein (RAR1) Contains a 3 nt micro-exon at exon 2. 1 25 1 At5g54450 hypothetical protein contains Pfam profile PF03478: Protein of unknown function (DUF295) 1 25 2 At5g54510 "auxin-responsive GH3 protein, putative (DFL-1) identical to auxin-responsive GH3 homologue [Arabidopsis thaliana] GI:11041726; similar to auxin-responsive GH3 product [Glycine max] GI:18591; contains Pfam profile PF03321: GH3 auxin-responsive promoter" 1 25 3 At5g54640 histone H2A identical to histone H2A Arabidopsis thaliana GI:7595337 1 25 4 At5g54700 "ankyrin repeat family protein contains ankyrin repeat domains, Pfam:PF00023" 1 25 5 At5g54850 expressed protein 1 25 6 At5g54900 "RNA-binding protein 45 (RBP45), putative contains similarity to polyadenylate-binding protein 5" 1 25 7 At5g55040 "DNA-binding bromodomain-containing protein contains bromodomain, INTERPRO:IPR001487" 1 25 8 At5g55100 SWAP (Suppressor-of-White-APricot)/surp domain-containing protein contains Pfam domain PF01805: Surp module 1 25 9 At5g57780 expressed protein similar to unknown protein (emb CAB79759.1) 1 25 10 At5g57820 hypothetical protein 1 25 11 At5g57960 GTP-binding family protein similar to SP|P25519 GTP-binding protein hflX {Escherichia coli} 1 25 12 At5g58010 "basic helix-loop-helix (bHLH) family protein bHLH transcription factor GBOF-1, Tulipa gesneriana, EMBL:AF185269; contains Pfam profile PF00010: Helix-loop-helix DNA-binding domain" 1 25 13 At5g58180 SNARE protein-related similar to SNARE protein Ykt6 [Homo sapiens] GI:2507637 1 25 14 At5g58230 WD-40 repeat protein (MSI1) contains 6 WD-40 repeats (PF0400); identical to WD-40 repeat protein (SP:O22467) [Arabidopsis thaliana] 1 25 15 At5g58370 expressed protein 1 25 16 At5g58400 "peroxidase, putative similar to peroxidase [Nicotiana tabacum] gi|5381253|dbj|BAA82306" 1 25 17 At5g61000 "replication protein, putative similar to replication protein A1 [Oryza sativa] GI:2258469; contains InterPro entry IPR004365: OB-fold nucleic acid binding domain" 1 25 18 At5g61050 histone deacetylase-related / HD-related 1 25 19 At5g61210 SNAP25 homologous protein SNAP33 (SNAP33) (SNAP33B) / synaptosomal-associated protein SNAP25-like 1 / snap25a identical to SNAP25 homologous protein SNAP33 (AtSNAP33) (Synaptosomal-associated protein SNAP25-like 1) (SNAP-25 like protein 1) (Snap25a) (Swiss-Prot:Q9S7P9) [Arabidopsis thaliana] 1 25 20 At5g61270 basic helix-loop-helix (bHLH) family protein contains Pfam profile: PF00010 helix-loop-helix DNA-binding domain 1 25 21 At5g61420 myb family transcription factor (MYB28) contains Pfam profile: PF00249 myb-like DNA-binding domain 1 25 22 At5g61470 "zinc finger (C2H2 type) family protein contains Pfam profile: PF00096 zinc finger, C2H2 type" 1 25 23 At5g61605 expressed protein 1 25 24 At5g61660 glycine-rich protein 1 25 25 At5g64360 DNAJ heat shock N-terminal domain-containing protein low similarity to AHM1 [Triticum aestivum] GI:6691467; contains Pfam profile PF00226 DnaJ domain 1 26 1 At5g64400 "expressed protein contains Pfam domain, PF04933: Protein of unknown function (DUF657)" 1 26 2 At5g64540 hypothetical protein 1 26 3 At5g64590 "hypothetical protein contains Pfam profile PF04396: Protein of unknown function, DUF537" 1 26 4 At5g64720 hypothetical protein 1 26 5 At5g64780 expressed protein similar to unknown protein (pir||T04031) 1 26 6 At5g64910 expressed protein ; expression supported by MPSS 1 26 7 At5g64970 mitochondrial substrate carrier family protein contains Pfam profile: PF00153 mitochondrial carrier protein 1 26 8 At5g67480 "TAZ zinc finger family protein / BTB/POZ domain-containing protein contains Pfam PF00651 : BTB/POZ domain; contains Pfam PF02135 : TAZ zinc finger; simiar to Chain A, Taz2 Domain Of The Transcriptional Adaptor Protein Cbp (GI:11514507) [Homo sapiens]; similar to (SP:Q09472) E1A-associated protein p300 (SP:Q09472) [Homo sapiens]; similar to histone acetyltransferase HAC4 (GI:21105785) [Arabidopsis thaliana]" 1 26 9 At5g67530 "peptidyl-prolyl cis-trans isomerase cyclophilin-type family protein contains Pfam domain, PF00160: peptidyl-prolyl cis-trans isomerase, cyclophilin-type" 1 26 10 At1g47700 hypothetical protein 1 26 11 At2g24945 expressed protein 1 26 12 ath-MIR167d miRNA gene Arabidopsis thaliana miR167d stem-loop 1 26 13 ath-MIR156b miRNA gene Arabidopsis thaliana miR156b stem-loop 1 26 14 ath-MIR168a miRNA gene Arabidopsis thaliana miR168a stem-loop 1 26 15 ath-MIR171c miRNA gene Arabidopsis thaliana miR171c stem-loop 1 26 16 At1g33610 "leucine-rich repeat family protein contains leucine rich-repeat (LRR) domains Pfam:PF00560, INTERPRO:IPR001611" 1 26 17 At1g33710 expressed protein ; expression supported by MPSS 1 26 18 At1g33890 "avirulence-responsive protein, putative / avirulence induced gene protein, putative / AIG protein, putative similar to SP|P54120 AIG1 protein {Arabidopsis thaliana}; contains Pfam profile PF04548: AIG1 family" 1 26 19 At1g33950 "avirulence-responsive family protein / avirulence induced gene (AIG1) family protein similar to AIG1 protein SP:P54120 (Arabidopsis thaliana), NTGP4 GB:AAD09518 (Nicotiana tabacum); contains Pfam profile: PF00735 cell division protein (members of this family bind GTP)" 1 26 20 At1g34110 "leucine-rich repeat transmembrane protein kinase, putative contains similarity to receptor protein kinase-like protein GI:10177178 from [Arabidopsis thaliana]" 1 26 21 At1g34170 transcriptional factor B3 family protein contains Pfam profile: PF02362 B3 DNA binding domain; contains non-consensus GA donor splice site at intron 12 1 26 22 At1g34360 "translation initiation factor 3 (IF-3) family protein low similarity to Translation initiation factor IF-3 from [subsp. Schizaphis graminum] {Buchnera aphidicola} SP|P46243, {Salmonella typhimurium} SP|P33321; contains Pfam profiles PF05198: Translation initiation factor IF-3 N-terminal domain, PF00707: Translation initiation factor IF-3 C-terminal domain" 1 26 23 At1g34410 transcriptional factor B3 family protein / auxin-responsive factor AUX/IAA-related contains Pfam profile: PF02309 AUX/IAA family 1 26 24 Blank Blank 1 26 25 Blank Blank 2 1 1 At5g49910 heat shock protein 70 / HSP70 (HSC70-7) identical to heat shock protein 70 [Arabidopsis thaliana] GI:6746592 2 1 2 At3g18780 actin 2 (ACT2) identical to SP|Q96292 Actin 2 {Arabidopsis thaliana}; nearly identical to SP|Q96293 Actin 8 [Arabidopsis thaliana] GI:1669387 and to At1g49240 2 1 3 Alien5 Control: Stratagene Spotreport Alien Oligo 2 1 4 At1g64740 tubulin alpha-1 chain (TUA1) nearly identical to SP|P11139 Tubulin alpha-1 chain {Arabidopsis thaliana} 2 1 5 atc07 Randomly generated negative control 2 1 6 Alien1 Control: Stratagene Spotreport Alien Oligo 2 1 7 At3g18780 actin 2 (ACT2) identical to SP|Q96292 Actin 2 {Arabidopsis thaliana}; nearly identical to SP|Q96293 Actin 8 [Arabidopsis thaliana] GI:1669387 and to At1g49240 2 1 8 atc03 Randomly generated negative control 2 1 9 At1g02740 MRG family protein member of Pfam PF05712: MRG; similar to Transcription factor-like protein MRG15 (MORF-related gene 15 protein) (MSL3-1 protein) (Protein HSPC008/HSPC061) (SP:Q9UBU8) {Homo sapiens} 2 1 10 At1g02810 pectinesterase family protein contains Pfam profile: PF01095 pectinesterase 2 1 11 At1g02900 rapid alkalinization factor (RALF) family protein similar to RALF precursor [Nicotiana tabacum] GI:16566316 2 1 12 At1g02950 "glutathione S-transferase, putative similar to glutathione-S-transferase GI:169887 from [Silene vulgaris]" 2 1 13 At1g03055 expressed protein 2 1 14 At1g03100 pentatricopeptide (PPR) repeat-containing protein low similarity to CRP1 [Zea mays] GI:3289002; contains Pfam profile PF01535: PPR repeat 2 1 15 At1g03260 expressed protein 2 1 16 At1g03320 hypothetical protein 2 1 17 At1g06000 UDP-glucoronosyl/UDP-glucosyl transferase family protein contains similarity to UDPG glucosyltransferase GB:AAB62270 GI:2232354 from [Solanum berthaultii] 2 1 18 At1g06040 zinc finger (B-box type) family protein / salt-tolerance protein (STO) identical to SP|Q96288 Salt-tolerance protein [Arabidopsis thaliana]; contains Pfam profile PF00643: B-box zinc finger 2 1 19 At1g06170 basic helix-loop-helix (bHLH) family protein contains Pfam profile:PF00010 helix-loop-helix DNA-binding domain 2 1 20 At1g06225 Clavata3 / ESR-Related-3 (CLE3) CLAVATA3/ESR-Related 3 (CLE3) 2 1 21 At1g06410 glycosyl transferase family 20 protein / trehalose-phosphatase family protein contains Pfam profile: PF02358 trehalose-phosphatase 2 1 22 At1g06470 "phosphate translocator-related low similarity to SP|P52178 Triose phosphate/phosphate translocator, non-green plastid, chloroplast precursor (CTPT) {Brassica oleracea}, phosphoenolpyruvate/phosphate translocator precursor [Mesembryanthemum crystallinum] GI:9295275" 2 1 23 At1g06640 "2-oxoglutarate-dependent dioxygenase, putative similar to 2A6 (GI:599622) and tomato ethylene synthesis regulatory protein E8 (SP|P10967); contains Pfam profile: PF00671 Iron/Ascorbate oxidoreductase family" 2 1 24 At1g06690 "aldo/keto reductase family protein contains Pfam profile PF00248: oxidoreductase, aldo/keto reductase family" 2 1 25 At1g09190 pentatricopeptide (PPR) repeat-containing protein contains Pfam profile PF01535: PPR repeat 2 2 1 At1g09245 expressed protein 2 2 2 At1g09410 pentatricopeptide (PPR) repeat-containing protein contains INTERPRO:IPR002885 PPR repeats 2 2 3 At1g09460 "glucan endo-1,3-beta-glucosidase-related similar to glucan endo-1,3-beta-glucosidase precursor SP:P52409 from [Triticum aestivum]" 2 2 4 At1g09600 "protein kinase family protein contains Pfam domain, PF00069: Protein kinase domain" 2 2 5 At1g09650 F-box family protein contains Pfam PF00646: F-box domain; contains TIGRFAM TIGR01640 : F-box protein interaction domain 2 2 6 At1g09800 tRNA pseudouridine synthase family protein contains Pfam profile PF01416: tRNA pseudouridine synthase 2 2 7 At1g09840 shaggy-related protein kinase kappa / ASK-kappa (ASK10) identical to shaggy-related protein kinase kappa SP:Q39019 GI:717180 from [Arabidopsis thaliana] 2 2 8 At1g12420 ACT domain-containing protein (ACR8) contains Pfam ACT domain PF01842 2 2 9 At1g12460 "leucine-rich repeat transmembrane protein kinase, putative " 2 2 10 At1g12660 hypothetical protein 2 2 11 At1g12730 cell division cycle protein-related contains 10 transmembrane domains; similar to PIG-U (GI:27372215) [Rattus norvegicus]; similar to Cell division cycle protein 91-like 1 (CDC91-like 1 protein) (PIG-U) (Swiss-Prot:Q9H490) [Homo sapiens] 2 2 12 At1g12880 MutT/nudix family protein similar to diphosphoinositol polyphosphate phosphohydrolase [Homo sapiens] GI:3978224; contains Pfam profile PF00293: NUDIX domain 2 2 13 At1g12940 "high-affinity nitrate transporter, putative similar to trans-membrane nitrate transporter protein AtNRT2:1 [Arabidopsis thaliana] GI:3747058, high-affinity nitrate transporter ACH1 [Arabidopsis thaliana] GI:3608362" 2 2 14 At1g13120 expressed protein contains Prosite PS00012: Phosphopantetheine attachment site; similar to GLE1 (GI:3288817) {Homo sapiens}; EST gb|N37870 comes from this gene 2 2 15 At1g13180 actin-related protein 3 (ARP3) identical to actin-related protein 3 (ARP3) [Arabidopsis thaliana] GI:21427461; contains Pfam profile PF00022: Actin 2 2 16 At1g15825 "hydroxyproline-rich glycoprotein family protein contains proline-rich extensin domains, INTERPRO:IPR002965" 2 2 17 At1g15880 Golgi SNARE 11 protein identical to Golgi SNARE 11 protein (GI:13898893) {Arabidopsis thaliana}; similar to putative cis-Golgi SNARE protein GI:2583133 from [Arabidopsis thaliana];similar toSP|O95249| 28 kDa Golgi SNARE protein (28 kDa cis-Golgi SNARE p28) (GOS-28). [Homo sapiens]; similar to Golgi SNARE protein (Golgi SNAP receptor complex member 1) (28 kDa cis-Golgi SNARE p28) (GOS-28) (SP:Q62931) {Rattus norvegicus} 2 2 18 At1g16025 hypothetical protein 2 2 19 At1g16070 tubby family protein similar to Tubby related protein 1 (Tubby-like protein 1) (Swiss-Prot:Q9Z273) [Mus musculus]; low similarity to Tubby related protein 1 (Tubby-like protein 1) (Swiss-Prot:O0029) {Homo sapiens}; similar to phosphodiesterase (GI:467578) [Mus musculus]; contains Pfam profile PF01167: Tub family 2 2 20 At1g16260 "protein kinase family protein contains Pfam domain, PF00069: Protein kinase domain" 2 2 21 At1g16320 "expressed protein ESTs gb|T76348, gb|N65615 and gb|Z18119 come from this gene" 2 2 22 At1g16480 pentatricopeptide (PPR) repeat-containing protein contains Pfam profile PF01535: PPR repeat 2 2 23 At1g16530 LOB domain protein 3 / lateral organ boundaries domain protein 3 (LBD3) identical to SP|Q9SA51 LOB domain protein 3 {Arabidopsis thaliana}; identical to ASYMMETRIC LEAVES2-like protein 9 [Arabidopsis thaliana] GI:19918989 2 2 24 At1g19330 expressed protein 2 2 25 At1g19390 "wall-associated kinase, putative similar to GB:CAB42872 from [Arabidopsis thaliana] (Plant Mol. Biol. 39 (6), 1189-1196 (1999))" 2 3 1 At1g19540 "isoflavone reductase, putative similar to SP|P52577; contains isoflavone reductase domain PF02716" 2 3 2 At1g19620 expressed protein 2 3 3 At1g19800 expressed protein contains Pfam PF02405: Domain of unknown function DUF140; similar to TOLUENE TOLERANCE PROTEIN TTG2B {Brucella melitensis 16M} (GI:17982923) 2 3 4 At1g19870 calmodulin-binding family protein contains Pfam profile: PF00612 IQ calmodulin-binding motif 2 3 5 At1g20060 kinesin motor protein-related 2 3 6 At1g20120 "family II extracellular lipase, putative similar to family II lipase EXL3 GI:15054386, SP|P40602 Anther-specific proline-rich protein APG precursor {Arabidopsis thaliana}; contains Pfam profile PF00657: GDSL-like Lipase/Acylhydrolase" 2 3 7 At1g22890 expressed protein 2 3 8 At1g22920 "COP9 signalosome subunit 5B / CSN subunit 5B (CSN5B) / c-JUN coactivator protein AJH1, putative (AJH1) COP9 complex subunit CSN5-1; identical to Arabidopsis homologs of a c-Jun coactivator AJH1 GI:3641314 from [Arabidopsis thaliana]; identical to cDNA CSN complex subunit 5B (CSN5B) GI:18056662; contains Pfam profile PF01398: Mov34/MPN/PAD-1 family" 2 3 9 At1g23060 expressed protein Location of EST gb|T22158 and gb|AA395675 2 3 10 At1g23100 "10 kDa chaperonin, putative similar to 10 kDa chaperonin SP:P34893 from [Arabidopsis thaliana]" 2 3 11 At1g23250 "caleosin-related similar to calcium-binding RD20 protein [Arabidopsis thaliana] GI:10862968, caleosin GB:AAF13743 GI:6478218 from [Sesamum indicum]" 2 3 12 At1g23310 "glutamate:glyoxylate aminotransferase 1 (GGT1) identical to glutamate:glyoxylate aminotransferase 1 [Arabidopsis thaliana] GI:24461827; similar to alanine aminotransferase GI:4730884 from [Oryza sativa]; contains Pfam profile PF00155: aminotransferase, classes I and II" 2 3 13 At1g23450 pentatricopeptide (PPR) repeat-containing protein contains INTERPRO:IPR002885 PPR repeats 2 3 14 At1g23500 "GDSL-motif lipase, putative similar to family II lipase EXL6 (GI:15054390), EXL4 (GI:15054388) [Arabidopsis thaliana]; contains Pfam profile PF00657: Lipase/Acylhydrolase with GDSL-like motif" 2 3 15 At1g27190 "leucine-rich repeat transmembrane protein kinase, putative similar to CLV1 receptor kinase GB:AAB58929 GI:2160756 from [Arabidopsis thaliana]" 2 3 16 At1g27260 paired amphipathic helix repeat-containing protein low similarity to transcriptional repressor SIN3B [Mus musculus] GI:2921547; contains Pfam profile PF02671: Paired amphipathic helix repeat 2 3 17 At1g27390 mitochondrial import receptor subunit TOM20-2 (TOM20-2) identical to mitochondrial import receptor subunit TOM20-2 SP:P82873 from [Arabidopsis thaliana] 2 3 18 At1g27440 exostosin family protein contains Pfam profile: PF03016 exostosin family 2 3 19 At1g27595 expressed protein similar to Symplekin (SP:Q92797) {Homo sapiens} 2 3 20 At1g27640 expressed protein 2 3 21 At1g27790 "hypothetical protein similar to At3g24380, At5g36840, At5g35010, At3g42740, At4g05290, At2g14770, At3g43390, At2g05560, At4g08880, At1g34730" 2 3 22 At1g27860 expressed protein contains Pfam profile PF04776: Protein of unknown function (DUF626) 2 3 23 At1g30790 F-box family protein contains Pfam PF00646: F-box domain; contains TIGRFAM TIGR01640 : F-box protein interaction domain 2 3 24 At1g30835 expressed protein 2 3 25 At1g31020 "thioredoxin o (TRXO2) similar to thioredoxin 2 from Saccharomyces cerevisiae GI:173050, 3'-end of protein contains similarity to thioredoxins; contains Pfam profile: PF00085 Thioredoxin; identical to cDNA thioredoxin o (TRXO2) GI:15081458" 2 4 1 At1g31080 F-box family protein contains Pfam profile: PF00646 F-box domain 2 4 2 At1g31270 hypothetical protein 2 4 3 At1g31330 photosystem I reaction center subunit III family protein contains Pfam profile: PF02507: photosystem I reaction center subunit III 2 4 4 At1g31500 endonuclease/exonuclease/phosphatase family protein low similarity to SP|P31384 Glucose-repressible alcohol dehydrogenase transcriptional effector (Carbon catabolite repressor protein 4) {Saccharomyces cerevisiae}; contains Pfam profile PF03372: Endonuclease/Exonuclease/phosphatase family 2 4 5 At1g31550 "GDSL-motif lipase, putative similar to lipase [Arabidopsis thaliana] GI:1145627; contains InterPro Entry IPR001087 Lipolytic enzyme, G-D-S-L family" 2 4 6 At1g34590 hypothetical protein 2 4 7 At1g34710 "hypothetical protein similar to At3g43370, At2g14780, At1g27810, At3g42760, At1g25784, At4g08890" 2 4 8 At1g35140 "phosphate-responsive protein, putative similar to phi-1 (phosphate-induced gene) [Nicotiana tabacum] GI:3759184; contains Pfam profile PF04674: Phosphate-induced protein 1 conserved region" 2 4 9 At1g35190 "oxidoreductase, 2OG-Fe(II) oxygenase family protein low similarity to hyoscyamine 6-dioxygenase hydroxylase from Hyoscyamus niger [GB:P24397][SP|P24397], Atropa belladona [gi:4996123]; contains Pfam domain PF03171, 2OG-Fe(II) oxygenase superfamily" 2 4 10 At1g35420 dienelactone hydrolase family protein low similarity to dienelactone hydrolase [Rhodococcus opacus] GI:23094407; contains Pfam profile PF01738: Dienelactone hydrolase family 2 4 11 At1g35500 hypothetical protein 2 4 12 At1g35650 "Ulp1 protease family protein PF02902: Ulp1 protease family, C-terminal catalytic domain; similar to At1g21020, At3g26530, At1g08760, At1g08740, At2g29240" 2 4 13 At1g35720 annexin 1 (ANN1) identical to annexin (AnnAt1) [Arabidopsis thaliana] GI:4959106 2 4 14 At1g47340 F-box family protein contains F-box domain Pfam:PF00646 2 4 15 At1g47400 expressed protein 2 4 16 At1g47570 "zinc finger (C3HC4-type RING finger) family protein contains Pfam PF00097: Zinc finger, C3HC4 type (RING finger)" 2 4 17 At1g47640 expressed protein similar to seven transmembrane domain protein GI:3550427 from [Homo sapiens] 2 4 18 At1g47800 F-box family protein contains F-box domain Pfam:PF00646 2 4 19 At1g47830 "clathrin coat assembly protein, putative similar to clathrin coat assembly protein AP17 GB:CAA65533 GI:2959358 from [Zea mays]; contains Pfam profile: PF01217 clathrin adaptor complex small chain" 2 4 20 At1g48040 protein phosphatase 2C-related / PP2C-related similar to protein phosphatase-2C GB:AAC36698 GI:3643085 from [Mesembryanthemum crystallinum] 2 4 21 At1g48095 hypothetical protein 2 4 22 At1g51130 expressed protein similar to unknown protein GI:9294403 from [Arabidopsis thaliana] 2 4 23 At1g51200 "zinc finger (AN1-like) family protein contains Pfam domains, PF01428: AN1-like Zinc finger and PF01754: A20-like zinc finger" 2 4 24 At1g51370 F-box family protein contains F-box domain Pfam:PF00646 2 4 25 At1g51405 "myosin-related low similarity to nonmuscle myosin heavy chain from Gallus gallus [GI:212449], Xenopus laevis [GI:214624], Homo sapiens [GI:641958]" 2 5 1 At1g51560 expressed protein 2 5 2 At1g51600 zinc finger (GATA type) family protein contains similarity to zinc-finger protein ZIM [Arabidopsis thaliana] gi|8918533|dbj|BAA97679; contains Pfam PF00320: GATA zinc finger 2 5 3 At1g51740 "syntaxin 81 (SYP81) identical to SP|P59277 Syntaxin 81 (AtSYP81) {Arabidopsis thaliana}; identified as syntaxin SYP81 by Sanderfoot, A.A., et al in Plant Physiol. 124:1558-69 (2000); similar to Syntaxin 18 (SP:Q9P2W9){Homo sapiens}" 2 5 4 At1g51800 "leucine-rich repeat protein kinase, putative similar to light repressible receptor protein kinase [Arabidopsis thaliana] gi|1321686|emb|CAA66376; contains leucine rich repeat (LRR) domains, Pfam:PF00560; contains protein kinase domain, Pfam:PF00069" 2 5 5 At1g54410 "dehydrin family protein contains Pfam domain, PF00257: Dehydrin" 2 5 6 At1g54470 hypothetical protein 2 5 7 At1g54650 expressed protein similar to Actin-binding protein ABP140 (Swiss-Prot:Q08641) [Saccharomyces cerevisiae] 2 5 8 At1g54730 "sugar transporter, putative similar to ERD6 protein [Arabidopsis thaliana] GI:3123712, sugar-porter family proteins 1 and 2 [Arabidopsis thaliana] GI:14585699, GI:14585701; contains Pfam profile PF00083: major facilitator superfamily protein" 2 5 9 At1g54870 short-chain dehydrogenase/reductase (SDR) family protein C-terminal similar to dormancy related protein GI:1220178 from [Trollius ledebourii] 2 5 10 At1g54926 hypothetical protein 2 5 11 At1g55090 "carbon-nitrogen hydrolase family protein low similarity to SP|P71911 Glutamine-dependent NAD(+) synthetase (EC 6.3.5.1) {Mycobacterium tuberculosis}; contains Pfam profile PF00795: hydrolase, carbon-nitrogen family" 2 5 12 At1g55160 expressed protein 2 5 13 At1g59640 basic helix-loop-helix (bHLH) family protein 2 5 14 At1g59690 hypothetical protein 2 5 15 At1g59835 hypothetical protein 2 5 16 At1g59865 expressed protein 2 5 17 At1g60010 expressed protein 2 5 18 At1g60080 "3' exoribonuclease family domain 1-containing protein similar to SP|Q96B26 Exosome complex exonuclease RRP43 (EC 3.1.13.-) (Ribosomal RNA processing protein 43) {Homo sapiens}; contains Pfam profile PF01138: 3' exoribonuclease family, domain 1" 2 5 19 At1g60340 apical meristem formation protein-related contains similarity to CUC1 [Arabidopsis thaliana] gi|12060422|dbj|BAB20598 and NAM [Petunia x hybrida] gi|1279640|emb|CAA63101 2 5 20 At1g60400 F-box family protein contains F-box domain Pfam:PF00646 2 5 21 At1g63250 "DEAD box RNA helicase, putative similar to RNA helicase (RH25) [Arabidopsis thaliana] GI:3776023; contains Pfam profiles PF00270: DEAD/DEAH box helicase, PF00271: Helicase conserved C-terminal domain" 2 5 22 At1g63290 "ribulose-phosphate 3-epimerase, cytosolic, putative / pentose-5-phosphate 3-epimerase, putative strong similarity to D-ribulose-5-phosphate 3-epimerase [Oryza sativa] GI:6007803; contains Pfam profile PF00834: Ribulose-phosphate 3 epimerase family" 2 5 23 At1g63470 "DNA-binding family protein contains a AT hook motif (DNA binding motifs with a preference for A/T rich regions), Pfam:PF02178" 2 5 24 At1g63540 hydroxyproline-rich glycoprotein family protein 2 5 25 At1g63680 "Mur ligase family protein contains Pfam profile: PF01225 Mur ligase family, catalytic domain" 2 6 1 At1g63720 expressed protein similar to putative protein GB:CAA18164 [Arabidopsis thaliana] 2 6 2 At1g63855 expressed protein 2 6 3 At1g63940 "monodehydroascorbate reductase, putative similar to monodehydroascorbate reductase GB:AAD28178 [Brassica juncea]" 2 6 4 At1g66720 S-adenosyl-L-methionine:carboxyl methyltransferase family protein similar to defense-related protein cjs1 [Brassica carinata][GI:14009292][Mol Plant Pathol (2001) 2(3):159-169] 2 6 5 At1g66760 "MATE efflux family protein contains TIGRfam profile: TIGR00797: MATE efflux family protein, Pfam profile PF01554: Uncharacterized membrane protein family" 2 6 6 At1g66940 protein kinase-related 2 6 7 At1g66980 "protein kinase family protein / glycerophosphoryl diester phosphodiesterase family protein similar to leaf rust resistance kinase Lr10 GI:1680685 from [Triticum aestivum]; contains Pfam profiles PF03009: Glycerophosphoryl diester phosphodiesterase family, PF00069: Protein kinase domain" 2 6 8 At1g67140 expressed protein 2 6 9 At1g67210 "proline-rich spliceosome-associated (PSP) family protein / zinc knuckle (CCHC-type) family protein contains Pfam domains PF00098: Zinc knuckle, PF04046: PSP" 2 6 10 At1g67370 "meiotic asynaptic mutant 1 (ASY1) identical to meiotic asynaptic mutant 1 [Arabidopsis thaliana] GI:7939627; contains Pfam profiles PF02301: DNA-binding HORMA domain, PF04433: SWIRM domain" 2 6 11 At1g67440 "expressed protein contains Pfam domain PF03193: Protein of unknown function, DUF258" 2 6 12 At1g70090 glycosyl transferase family 8 protein contains Pfam profile: PF01501 glycosyl transferase family 8 2 6 13 At1g70130 "lectin protein kinase, putative similar to receptor lectin kinase 3 [Arabidopsis thaliana] gi|4100060|gb|AAD00733" 2 6 14 At1g70300 "potassium transporter, putative similar to potassium transporter HAK2p [Mesembryanthemum crystallinum] gi|14091471|gb|AAK53759; KUP/HAK/KT Transporter family member, PMID:11500563; contains Pfam profile PF02705: K+ potassium transporter" 2 6 15 At1g70360 F-box protein-related 2 6 16 At1g70490 "ADP-ribosylation factor, putative nearly identical to ADP-ribosylation factor 1 GB:P36397 [Arabidopsis thaliana], ADP-ribosylation factor GI:166586 [Arabidopsis thaliana]" 2 6 17 At1g70540 invertase/pectin methylesterase inhibitor family protein contains Pfam profile PF04043: Plant invertase/pectin methylesterase inhibitor 2 6 18 At1g70690 kinase-related contains Pfam PF01657:Domain of unknown function; similar to receptor-like protein kinase 4 GI:13506745 [Arabidopsis thaliana] 2 6 19 At1g70750 "expressed protein contains Pfam profile PF04576: Protein of unknown function, DUF593; supporting cDNA gi|4101563|gb|AF004556.1|AF004556" 2 6 20 At1g73600 "phosphoethanolamine N-methyltransferase 3, putative (NMT3) strong similarity to SP|Q9FR44 Phosphoethanolamine N-methyltransferase 1 (EC 2.1.1.103) (PEAMT 1) (AtNMT1) {Arabidopsis thaliana}; identical to SP|Q9C6B9 Putative phosphoethanolamine N-methyltransferase 3 {Arabidopsis thaliana}" 2 6 21 At1g73640 Ras-related GTP-binding family protein contains Pfam profile: PF00071 ras family Pfam profile: PF00071 Ras family 2 6 22 At1g73780 protease inhibitor/seed storage/lipid transfer protein (LTP) family protein contains Pfam profile: PF00234 protease inhibitor/seed storage/LTP family 2 6 23 At1g73830 basic helix-loop-helix (bHLH) family protein contains Pfam profile: PF00010 helix-loop-helix DNA-binding domain 2 6 24 At1g73990 peptidase U7 family protein similar to protease IV GB:AAA57008 from [Escherichia coli]; contains Pfam profile PF01343: Peptidase family U7 2 6 25 At1g74045 hypothetical protein 2 7 1 At1g74210 glycerophosphoryl diester phosphodiesterase family protein low similarity to glycerophosphodiester phosphodiesterase [Borrelia hermsii] GI:1399038; contains Pfam profile PF03009: Glycerophosphoryl diester phosphodiesterase family 2 7 2 At1g74270 60S ribosomal protein L35a (RPL35aC) similar to ribosomal protein L33B GB:NP_014877 from [Saccharomyces cerevisiae] 2 7 3 AT5G57480 PC-1 2 7 4 3XSSC PC-1 2 7 5 AT1G29930 PC-1 2 7 6 3XSSC PC-1 2 7 7 AT3G44150 PC-1 2 7 8 3XSSC PC-1 2 7 9 AT4G00810 PC-1 2 7 10 3XSSC PC-1 2 7 11 At1g77060 mutase family protein similar to carboxyvinyl-carboxyphosphonate phosphorylmutase GB:O49290 from [Arabidopsis thaliana]; similar to carboxyphosphonoenolpyruvate mutase (GI:47149) [Streptomyces hygroscopicus]; contains Prosite PS00161: Isocitrate lyase signature 2 7 12 At1g77090 thylakoid lumenal 29.8 kDa protein identical to SP|O49292|TL30_ARATH (Arabidopsis thaliana);contains a PsbP domain AF370571; SIMILAR TO GI:13926195--F22K20.16 2 7 13 At1g77260 dehydration-responsive protein-related similar to early-responsive to dehydration stress ERD3 protein [Arabidopsis thaliana] GI:15320410; contains Pfam profile PF03141: Putative methyltransferase 2 7 14 At1g77320 BRCT domain-containing protein contains Pfam profile PF00533: BRCA1 C Terminus (BRCT) domain 2 7 15 At1g77480 "nucellin protein, putative similar to nucellin GB:AAB96882 GI:2290202 [Hordeum vulgare] (nucellin: similar to aspartic protease and its specific expression in nucellar cells during degeneration)" 2 7 16 At1g77540 expressed protein similar to GB:AAD41433 2 7 17 At1g77720 "protein kinase family protein contains protein kinase domain, Pfam:PF00069" 2 7 18 At1g77770 expressed protein 2 7 19 At1g80320 "oxidoreductase, 2OG-Fe(II) oxygenase family protein similar to GS-AOP loci [GI:16118889, GI:16118887, GI:16118891, GI:16118893]; contains PF03171 2OG-Fe(II) oxygenase superfamily domain" 2 7 20 At1g80380 phosphoribulokinase/uridine kinase-related 2 7 21 At1g80530 "nodulin family protein similar to nodulin-like protein [Arabidopsis thaliana] GI:3329368, nodule-specific protein Nlj70 [Lotus japonicus] GI:3329366" 2 7 22 At1g80590 WRKY family transcription factor similar to zinc finger transcription factor WRKY1 GB:AAF23898 from (Oryza sativa) 2 7 23 At1g80770 expressed protein 2 7 24 At1g80830 "NRAMP metal ion transporter 1 (NRAMP1) identical to NRAMP1 protein [Arabidopsis thaliana] gi|7108911|gb|AAF36535; member of the natural resistance-associated macrophage protein (NRAMP) metal transporter family, PMID:11500563" 2 7 25 At1g80960 F-box protein-related contains weak hit to Pfam PF00646: F-box domain 2 8 1 At2g01060 myb family transcription factor contains Pfam profile: PF00249 myb-like DNA-binding domain 2 8 2 At2g04025 expressed protein 2 8 3 At2g04039 expressed protein 2 8 4 At2g04235 "expressed protein weak similarity to neurofilament protein (GI:161292) [Loligo pealei]; weak similarity to Glucoamylase S1/S2 precursor (EC 3.2.1.3) (Glucan 1,4-alpha- glucosidase) (1,4-alpha-D-glucan glucohydrolase) (Swiss-Prot:P08640) [Saccharomyces cerevisiae]" 2 8 5 At2g04305 magnesium transporter CorA-like protein-related 2 8 6 At2g04495 expressed protein 2 8 7 At2g04550 "dual specificity protein phosphatase family protein contains Pfam profile: PF00782 dual specificity phosphatase, catalytic domain" 2 8 8 At2g04780 fasciclin-like arabinogalactan-protein (FLA7) identical to gi_13377782_gb_AAK20860 2 8 9 At2g04830 "F-box family protein similar to F-box protein family, AtFBX7 (GI:20197899) [Arabidopsis thaliana]; confirmed by FLcDNA GI:16604421; contains uncharacterized Arabidoppsis domain shared by 33 Arabidopsis proteins" 2 8 10 At2g11775 expressed protein 2 8 11 At2g11910 expressed protein 2 8 12 At2g12550 ubiquitin-associated (UBA)/TS-N domain-containing protein low similarity to NUB1 (NEDD8-interacting protein) [Homo sapiens] GI:13383476; contains Pfam profile PF00627: UBA/TS-N domain 2 8 13 At2g12880 "zinc knuckle (CCHC-type) family protein contains Pfam domain, PF00098: Zinc knuckle" 2 8 14 At2g13370 "chromodomain-helicase-DNA-binding family protein / CHD family protein similar to SP|O14647 Chromodomain-helicase-DNA-binding protein 2 (CHD-2) {Homo sapiens}; contains Pfam profiles PF00271: Helicase conserved C-terminal domain, PF00176: SNF2 family N-terminal domain, PF00385: 'chromo' (CHRromatin Organization MOdifier)" 2 8 15 At2g13540 mRNA cap-binding protein (ABH1) identical to mRNA cap binding protein [Arabidopsis thaliana] GI:15192738; contains Pfam profile PF02854: MIF4G domain; identical to cDNA nuclear cap-binding protein CBP80 GI:8515770 2 8 16 At2g13770 hypothetical protein 2 8 17 At2g13820 protease inhibitor/seed storage/lipid transfer protein (LTP) family protein contains Pfam protease inhibitor/seed storage/LTP family domain PF00234 2 8 18 At2g17140 pentatricopeptide (PPR) repeat-containing protein contains Pfam profile PF01535: PPR repeat 2 8 19 At2g17200 "ubiquitin family protein weak similarity to PLIC-2 (ubiquitin-like type II) [Homo sapiens] GI:9937505; contains Pfam profiles PF00240: Ubiquitin family, PF00627: UBA/TS-N domain" 2 8 20 At2g17370 3-hydroxy-3-methylglutaryl-CoA reductase 2 / HMG-CoA reductase 2 (HMGR2) identical to SP|P43256 3-hydroxy-3-methylglutaryl-coenzyme A reductase 2 (EC 1.1.1.34) (HMG- CoA reductase 2) (HMGR2) {Arabidopsis thaliana} 2 8 21 At2g17440 leucine-rich repeat family protein contains Pfam PF00560: Leucine Rich Repeats 2 8 22 At2g17640 "serine O-acetyltransferase, putative (SAT-106) similar to Arabidopsis thaliana serine acetyltransferase GI:905391" 2 8 23 At2g17690 F-box family protein contains F-box domain Pfam:PF00646 2 8 24 At2g17840 senescence/dehydration-associated protein-related (ERD7) similar to senescence-associated protein 12 [Hemerocallis hybrid cultivar] gi|3551958|gb|AAC34857; strong similarity to early-responsive to dehydration stress ERD7 protein [Arabidopsis thaliana] gi|15320412|dbj|BAB63916; identical to cDNA ERD7 partial cds GI:15320411 2 8 25 At2g17890 "calcium-dependent protein kinase family protein / CDPK family protein contains Pfam domains, PF00069: Protein kinase domain and PF00036: EF hand" 2 9 1 At2g20630 "protein phosphatase 2C, putative / PP2C, putative " 2 9 2 At2g20670 expressed protein contains Pfam profile PF04720: Protein of unknown function (DUF506) 2 9 3 At2g20805 hypothetical protein 2 9 4 At2g20825 expressed protein 2 9 5 At2g20950 expressed protein 2 9 6 At2g21030 expressed protein 2 9 7 At2g21190 ER lumen protein retaining receptor family protein similar to SP|P33948 ER lumen protein retaining receptor. {Plasmodium falciparum}; contains Pfam profile PF00810: ER lumen protein retaining receptor 2 9 8 At2g21230 bZIP family transcription factor contains a bZIP transcription factor basic domain signature (PDOC00036) 2 9 9 At2g24060 "translation initiation factor 3 (IF-3) family protein similar to SP|P33319 Translation initiation factor IF-3 {Proteus vulgaris}; contains Pfam profiles PF00707: Translation initiation factor IF-3, C-terminal domain, PF05198: Translation initiation factor IF-3, N-terminal domain" 2 9 10 At2g24130 "leucine-rich repeat transmembrane protein kinase, putative " 2 9 11 At2g24300 calmodulin-binding protein similar to calmodulin-binding protein TCB60 GI:1698548 from [Nicotiana tabacum] 2 9 12 At2g24360 "serine/threonine/tyrosine kinase, putative similar to serine/threonine/tyrosine kinase [Arachis hypogaea] gi|13124865|gb|AAK11734" 2 9 13 At2g24540 "kelch repeat-containing F-box family protein similar to SKP1 interacting partner 4 [Arabidopsis thaliana] GI:10716953; contains Pfam profiles PF01344: Kelch motif, PF00646: F-box domain" 2 9 14 At2g24600 "ankyrin repeat family protein contains ankyrin repeats, Pfam:PF00023" 2 9 15 At2g24780 hypothetical protein 2 9 16 At2g24830 "zinc finger (CCCH-type) family protein / D111/G-patch domain-containing protein contains Pfam profiles PF01585: G-patch domain, PF00642: Zinc finger C-x8-C-x5-C-x3-H type (and similar)" 2 9 17 At2g27520 F-box family protein contains Pfam profile: PF00646 F-box domain 2 9 18 At2g27580 "zinc finger (AN1-like) family protein contains Pfam domains, PF01428: AN1-like Zinc finger and PF01754: A20-like zinc finger" 2 9 19 At2g27750 "nucleolar matrix protein-related contains Pfam domain, PF04935: Surfeit locus protein 6" 2 9 20 At2g27780 expressed protein 2 9 21 At2g27960 cyclin-dependent kinase / CDK (CKS1) identical to Cks1 protein [Arabidopsis thaliana] gi|2274859|emb|CAA03859 2 9 22 At2g28020 hypothetical protein 2 9 23 At2g28170 "cation/hydrogen exchanger, putative (CHX7) monovalent cation:proton antiporter family 2 (CPA2) member, PMID:11500563" 2 9 24 At2g28230 expressed protein 2 9 25 At2g30950 FtsH protease (VAR2) identical to zinc dependent protease VAR2 GI:7650138 from [Arabidopsis thaliana] 2 10 1 At2g31010 "protein kinase family protein contains protein kinase domain, Pfam:PF00069" 2 10 2 At2g31150 expressed protein 2 10 3 At2g31210 basic helix-loop-helix (bHLH) family protein contains Pfam profile: PF00010 helix-loop-helix DNA-binding domain; PMID: 12679534 2 10 4 At2g31360 delta 9 desaturase (ADS2) identical to delta 9 acyl-lipid desaturase (ADS2) GI:2970036 from [Arabidopsis thaliana] 2 10 5 At2g31400 "pentatricopeptide (PPR) repeat-containing protein low similarity to fertility restorer [Petunia x hybrida] GI:22128587, post-transcriptional control of chloroplast gene expression CRP1 [Zea mays] GI:3289002; contains Pfam profile PF01535: PPR repeat" 2 10 6 At2g31570 "glutathione peroxidase, putative " 2 10 7 At2g31610 40S ribosomal protein S3 (RPS3A) 2 10 8 At2g34240 "hypothetical protein contains Pfam profiles PF04780: Protein of unknown function (DUF629), PF04781: Protein of unknown function (DUF627)" 2 10 9 At2g34280 S locus F-box-related / SLF-related contains Pfam PF00646: F-box domain; contains weak hit to TIGRFAM TIGR01640 : F-box protein interaction domain; weakly similar to self-incompatibility (S-) locus F-box (GI:29420811) [Prunus mume] 2 10 10 At2g34390 major intrinsic family protein / MIP family protein contains Pfam profile: MIP PF00230; an isoform contains a non-consensus GA-AG intron 2 10 11 At2g34420 chlorophyll A-B binding protein / LHCII type I (LHB1B2) identical to GB:X64460 photosystem II type I chlorophyll a/b binding protein [Arabidopsis thaliana] GI:16364 2 10 12 At2g34580 hypothetical protein 2 10 13 At2g34630 "geranyl diphosphate synthase, putative / GPPS, putative / dimethylallyltransferase, putative / prenyl transferase, putative identical to GI:11322965 A. thaliana geranyl diphosphate synthase" 2 10 14 At2g34810 FAD-binding domain-containing protein similar to SP|P30986 reticuline oxidase precursor (Berberine-bridge-forming enzyme) (BBE) (Tetrahydroprotoberberine synthase) [Eschscholzia californica]; contains PF01565 FAD binding domain 2 10 15 At2g34870 "hydroxyproline-rich glycoprotein family protein contains proline-rich extensin domains, INTERPRO:IPR002965" 2 10 16 At2g37440 endonuclease/exonuclease/phosphatase family protein similar to inositol polyphosphate 5-phosphatase I (GI:10444261) and II (GI:10444263) [Arabidopsis thaliana]; contains Pfam profile PF03372: Endonuclease/Exonuclease/phosphatase family 2 10 17 At2g37510 "RNA-binding protein, putative similar to SP|P10979 Glycine-rich RNA-binding, abscisic acid-inducible protein {Zea mays}; contains InterPro entry IPR000504: RNA-binding region RNP-1 (RNA recognition motif) (RRM)" 2 10 18 At2g37660 expressed protein 2 10 19 At2g37720 expressed protein 2 10 20 At2g37870 protease inhibitor/seed storage/lipid transfer protein (LTP) family protein contains Pfam protease inhibitor/seed storage/LTP family domain PF00234 2 10 21 At2g37925 copper transporter family protein similar to SP|Q39065 Copper transporter 1 (COPT1) {Arabidopsis thaliana}; contains Pfam profile PF04145: Ctr copper transporter family; supporting cDNA gi|18496855|gb|AF466372.1| 2 10 22 At2g38080 "laccase, putative / diphenol oxidase, putative similar to diphenol oxidase [Nicotiana tabacum][GI:1685087]" 2 10 23 At2g38140 chloroplast 30S ribosomal protein S31 (PSRP4) 2 10 24 At2g40680 hypothetical protein 2 10 25 At2g40740 WRKY family transcription factor contains Pfam profile: PF03106 WRKY DNA -binding domain 2 11 1 At2g40890 "cytochrome P450 98A3, putative (CYP98A3) identical to Cytochrome P450 98A3 (SP|O22203) [Arabidopsis thaliana]; similar to gi:17978651 from Pinus taeda" 2 11 2 At2g40925 F-box family protein contains F-box domain Pfam:PF00646 2 11 3 At2g41060 RNA recognition motif (RRM)-containing protein similar to UBP1 interacting protein 1a [Arabidopsis thaliana] GI:19574236; contains InterPro entry IPR000504: RNA-binding region RNP-1 (RNA recognition motif) (RRM) 2 11 4 At2g41110 calmodulin-2/3/5 (CAM2) (CAL1) almost identical to Calmodulin-2/3/5 SP:P25069 from [Arabidopsis thaliana] 2 11 5 At2g41260 glycine-rich protein / late embryogenesis abundant protein (M17) identical to late-embryogenesis abundant M17 protein GI:3342551 from [Arabidopsis thaliana] 2 11 6 At2g41340 "eukaryotic rpb5 RNA polymerase subunit family protein similar to SP|Q09191 DNA-directed RNA polymerases II 24 kDa polypeptide (EC 2.7.7.6) {Schizosaccharomyces pombe}; contains Pfam profiles PF03871: RNA polymerase Rpb5 N-terminal domain, PF01191: RNA polymerase Rpb5 C-terminal domain" 2 11 7 At2g43940 "thiol methyltransferase, putative similar to thiol methyltransferase 2 GI:14583121 from [Brassica oleracea]" 2 11 8 At2g43960 SWAP (Suppressor-of-White-APricot)/surp domain-containing protein contains Pfam profile: PF01805 surp module 2 11 9 At2g44080 expressed protein 2 11 10 At2g44130 "kelch repeat-containing F-box family protein very low similarity to SP|Q9ER30 Kelch-related protein 1 (Sarcosin) {Rattus norvegicus}; contains Pfam profiles PF01344: Kelch motif, PF00646: F-box domain" 2 11 11 At2g44290 "protease inhibitor/seed storage/lipid transfer protein (LTP) family protein (YLS3) similar to lipid transfer protein Picea abies GI:2627141; contains Pfam profile: PF00234: Protease inhibitor/seed storage/LTP family; identical to cDNA YLS3 mRNA for non-specific lipid transfer protein (nLTP) like protein, partial cds GI:13122283" 2 11 12 At2g44360 expressed protein 2 11 13 At2g44520 "UbiA prenyltransferase family protein similar to SP|Q12887 Protoheme IX farnesyltransferase, mitochondrial precursor (EC 2.5.1.-) (Heme O synthase) {Homo sapiens}, SP|P21592 COX10 {Saccharomyces cerevisiae}" 2 11 14 At2g44570 glycosyl hydrolase family 9 protein 2 11 15 At2g47240 long-chain-fatty-acid--CoA ligase family protein / long-chain acyl-CoA synthetase family protein similar to GI:1617270 (MF7P) and gi:1617628 (MF45P) from [Brassica napus] ; contains Pfam AMP-binding enzyme domain PF00501 2 11 16 At2g47300 hypothetical protein 2 11 17 At2g47470 thioredoxin family protein similar to protein disulfide isomerase [Dictyostelium discoideum] GI:2627440; contains Pfam profile: PF00085 Thioredoxin 2 11 18 At2g47500 kinesin motor protein-related 2 11 19 At2g47660 hypothetical protein 2 11 20 At2g47720 expressed protein 2 11 21 At2g47890 zinc finger (B-box type) family protein 2 11 22 At2g47910 expressed protein 2 11 23 At3g03250 "UTP--glucose-1-phosphate uridylyltransferase, putative / UDP-glucose pyrophosphorylase, putative / UGPase, putative strong similarity to SP|P19595 UTP--glucose-1-phosphate uridylyltransferase (EC 2.7.7.9) (UDP-glucose pyrophosphorylase) (UDPGP) (UGPase) {Solanum tuberosum}; contains Pfam profile PF01704: UTP--glucose-1-phosphate uridylyltransferase" 2 11 24 At3g03290 universal stress protein (USP) family protein contains Pfam profile: PF00582 universal stress protein family 2 11 25 At3g03460 hypothetical protein 2 12 1 At3g03520 phosphoesterase family protein low similarity to SP|P95246 Phospholipase C 2 precursor (EC 3.1.4.3) {Mycobacterium tuberculosis}; contains Pfam profile PF04185: Phosphoesterase family 2 12 2 At3g03700 "expressed protein contains Pfam domain, PF04515: Protein of unknown function, DUF580" 2 12 3 At3g03750 "SET domain-containing protein low similarity to G9a [Homo sapiens] GI:287865; contains Pfam profiles PF00856: SET domain, PF05033: Pre-SET motif" 2 12 4 At3g03890 expressed protein 2 12 5 At3g03940 "protein kinase family protein contains Pfam domains, PF00069: Protein kinase domain" 2 12 6 At3g06455 "splicing factor-related contains weak similarity to Swiss-Prot:Q12874 splicing factor 3A subunit 3 (Spliceosome associated protein 61, SAP 61, SF3a60) [Homo sapiens]" 2 12 7 At3g06500 "beta-fructofuranosidase, putative / invertase, putative / saccharase, putative / beta-fructosidase, putative similar to neutral invertase [Daucus carota] GI:4200165; contains Pfam profile PF04853: Plant neutral invertase" 2 12 8 At3g06640 "protein kinase family protein contains Serine/Threonine protein kinases active-site signature, PROSITE:PS00108" 2 12 9 At3g66654 "peptidyl-prolyl cis-trans isomerase cyclophilin-type family protein contains Pfam domain, PF00160: peptidyl-prolyl cis-trans isomerase, cyclophilin-type" 2 12 10 At3g06790 "plastid developmental protein DAG, putative similar to DAG protein, chloroplast precursor [Garden snapdragon] SWISS-PROT:Q38732" 2 12 11 At3g06860 "fatty acid multifunctional protein (MFP2) identical to fatty acid multifunctional protein (AtMFP2) GB:AF123254 [gi:4337027] (Arabidopsis thaliana) (fatty acid beta-oxidation); contains Pfam profiles PF02737 (3-hydroxyacyl-CoA dehydrogenase, NAD binding domain), PF00378 (enoyl-CoA hydratase/isomerase family protein), PF00725 (3-hydroxyacyl-CoA dehydrogenase)" 2 12 12 At3g07020 UDP-glucose:sterol glucosyltransferase (UGT80A2) identical to UDP-glucose:sterol glucosyltransferase [Arabidopsis thaliana] GI:2462931; contains Pfam profile: PF03033 glycosyltransferase family 28 N-terminal domain 2 12 13 At3g07070 "protein kinase family protein contains protein kinase domain, Pfam:PF00069" 2 12 14 At3g10110 mitochondrial import inner membrane translocase subunit Tim17/Tim22/Tim23 family protein weak similarity to TIM22 preprotein translocase [Rattus norvegicus] GI:6760457; contains Pfam profile PF02466: Mitochondrial import inner membrane translocase subunit Tim17 2 12 15 At3g10150 calcineurin-like phosphoesterase family protein contains Pfam profile: PF00149 calcineurin-like phosphoesterase 2 12 16 At3g10300 calcium-binding EF hand family protein low similarity to SP|P12815 Programmed cell death protein 6 (Probable calcium-binding protein ALG-2) {Mus musculus}; contains INTERPRO:IPR002048 calcium-binding EF-hand domain 2 12 17 At3g10350 anion-transporting ATPase family protein similar to SP|O43681 Arsenical pump-driving ATPase (EC 3.6.3.16) (Arsenite-translocating ATPase) (Arsenical resistance ATPase) (Arsenite-transporting ATPase) (ARSA) (ASNA-I) {Homo sapiens}; contains Pfam profile PF02374: Anion-transporting ATPase; contains non-consensus GA donor splice site at intron 5 2 12 18 At3g10490 no apical meristem (NAM) family protein similar to to NAC2 (GI:645671) [Arabidopsis thaliana]; contains Pfam PF02365: No apical meristem (NAM) protein 2 12 19 At3g10530 transducin family protein / WD-40 repeat family protein contains 2 WD-40 repeats (PF00400); BING4 (gi:3811380) {Mus musculus]; similar to hypothetical protein GB:P40055 [Saccharomyces cerevisiae] 2 12 20 At3g10660 "calcium-dependent protein kinase isoform 2 (CPK2) identical to calcium-dependent protein kinase isoform 2 [Arabidopsis thaliana] gi|9837343|gb|AAG00535; contains protein kinase domain, Pfam:PF00069; contains EF hand domain (calcium-binding EF-hand), Pfam:PF00036, INTERPRO:IPR002048" 2 12 21 At3g10720 "pectinesterase, putative contains similarity to pectinesterase from Vitis vinifera GI:15081598, Prunus persica SP|Q43062; contains Pfam profile PF01095 pectinesterase" 2 12 22 At3g13150 pentatricopeptide (PPR) repeat-containing protein contains Pfam profile PF01535: PPR repeat 2 12 23 At3g13190 "myosin heavy chain-related contains weak similarity to Myosin II heavy chain, non muscle (Swiss-Prot:P05659) [Acanthamoeba castellanii]" 2 12 24 At3g13280 "expressed protein contains Pfam profile PF04396: Protein of unknown function, DUF537; expression supported by MPSS" 2 12 25 At3g13340 "WD-40 repeat family protein contains Pfam profile: PF00400 WD domain, G-beta repeat (3 copies, 1 significant); similar to Trp-Asp repeat protein (PIR:T40094) [Schizosaccharomyces]" 2 13 1 At3g13500 hypothetical protein 2 13 2 At3g13560 "glycosyl hydrolase family 17 protein similar to beta-1,3-glucanase GI:15150341 from [Camellia sinensis]" 2 13 3 At3g13674 expressed protein 2 13 4 At3g13700 "RNA-binding protein, putative similar to mec-8 [Caenorhabditis elegans] GI:1370048; contains Pfam profile:PF00076 rrm:RNA recognition motif" 2 13 5 At3g16180 proton-dependent oligopeptide transport (POT) family protein contains Pfam profile: PF00854 POT family 2 13 6 At3g16240 "delta tonoplast integral protein (delta-TIP) identical to delta tonoplast integral protein (delta-TIP) (GI:9279707)(GB:U39485) [Arabidopsis thaliana] (Plant Cell 8 (4), 587-599 (1996))" 2 13 7 At3g16440 jacalin lectin family protein contains Pfam profile: PF01419 jacalin-like lectin domain; similar to myrosinase-binding protein homolog [Arabidopsis thaliana] GI:2997767 2 13 8 At3g16480 "mitochondrial processing peptidase alpha subunit, putative similar to mitochondrial processing peptidase alpha subunit, mitochondrial precursor, Alpha-MPP (Ubiquinol-cytochrome C reductase subunit II) [Potato] SWISS-PROT:P29677" 2 13 9 At3g16610 pentatricopeptide (PPR) repeat-containing protein contains Pfam profile PF01535: PPR repeat 2 13 10 At3g16670 expressed protein 2 13 11 At3g16830 WD-40 repeat family protein contains 10 WD-40 repeats (PF00400) (1 weak) 2 13 12 At3g16870 zinc finger (GATA type) family protein contains Pfam profile:PF00320 GATA:GATA zinc finger 2 13 13 At3g19515 expressed protein 2 13 14 At3g19553 amino acid permease family protein weak similarity to aspartate/glutamate transporter 1 [Mus musculus] GI:21322754; contains Pfam profile PF00324: Amino acid permease 2 13 15 At3g19710 "branched-chain amino acid aminotransferase, putative / branched-chain amino acid transaminase, putative (BCAT4) similar to branched-chain amino acid transaminase 6 [Arabidopsis thaliana] GI:13810195; contains Pfam profile: PF01063 aminotransferase class IV" 2 13 16 At3g19770 vacuolar sorting protein 9 domain-containing protein / VPS9 domain-containing protein contains Pfam domain PF02204: Vacuolar sorting protein 9 (VPS9) domain 2 13 17 At3g19940 "sugar transporter, putative similar to sugar transport protein [Arabidopsis thaliana] GI:16524; contains Pfam profile PF00083: major facilitator superfamily protein" 2 13 18 At3g20000 "porin family protein low similarity to haymaker protein [Mus musculus] GI:17834089, mitochondrial outer membrane protein MOM35 [Mus musculus] GI:6650562; contains Pfam profile PF01459: Eukaryotic porin" 2 13 19 At3g20140 cytochrome P450 family protein contains Pfam profile: PF00067 cytochrome P450 2 13 20 At3g20190 "leucine-rich repeat transmembrane protein kinase, putative similar to receptor kinase GB:AAA33715 [Petunia integrifolia]" 2 13 21 At3g22910 "calcium-transporting ATPase, plasma membrane-type, putative / Ca(2+)-ATPase, putative (ACA13) identical to SP|Q9LIK7 Potential calcium-transporting ATPase 13, plasma membrane-type (EC 3.6.3.8) (Ca(2+)-ATPase isoform 13) {Arabidopsis thaliana}; similar to SP|Q9LF79 Calcium-transporting ATPase 8, plasma membrane-type (EC 3.6.3.8) (Ca2+-ATPase, isoform 8) {Arabidopsis thaliana}; contains InterPro Accession IPR006069: Cation transporting ATPase" 2 13 22 At3g22960 "pyruvate kinase, putative similar to pyruvate kinase isozyme A, chloroplast precursor [Ricinus communis] SWISS-PROT:Q43117" 2 13 23 At3g23120 "leucine-rich repeat family protein contains leucine rich-repeat (LRR) domains Pfam:PF00560, INTERPRO:IPR001611; similar to Hcr2-5b GB:AAC78595 [Lycopersicon esculentum] (Plant Cell 10, 1915-1926 (1998);" 2 13 24 At3g23172 hypothetical protein 2 13 25 At3g23310 "protein kinase, putative contains protein kinase domain, Pfam:PF00069" 2 14 1 At3g23360 "protein phosphatase 2C, putative / PP2C, putative similar to protein phosphatase GB:AAD17805 from [Lotus japonicus]" 2 14 2 At3g23570 "dienelactone hydrolase family protein similar to SP|Q9ZT66 Endo-1,3;1,4-beta-D-glucanase precursor (EC 3.2.1.-) {Zea mays}; contains Pfam profile: PF01738 dienelactone hydrolase family" 2 14 3 At3g23620 "brix domain-containing protein contains Pfam domain, PF04427: Brix domain" 2 14 4 At3g26450 major latex protein-related / MLP-related low similarity to major latex protein {Papaver somniferum}[GI:294060] ; contains Pfam profile PF00407: Pathogenesis-related protein Bet v I family 2 14 5 At3g26510 octicosapeptide/Phox/Bem1p (PB1) domain-containing protein contains Pfam profile PF00564: PB1 domain 2 14 6 At3g26650 "glyceraldehyde 3-phosphate dehydrogenase A, chloroplast (GAPA) / NADP-dependent glyceraldehydephosphate dehydrogenase subunit A identical to SP|P25856 Glyceraldehyde 3-phosphate dehydrogenase A, chloroplast precursor (EC 1.2.1.13) (NADP-dependent glyceraldehydephosphate dehydrogenase subunit A) {Arabidopsis thaliana}" 2 14 7 At3g26680 DNA cross-link repair protein-related contains weak similarity to Swiss-Prot:P30620 DNA cross-LINK repair protein PSO2/SNM1 [Saccharomyces cerevisiae] 2 14 8 At3g26820 esterase/lipase/thioesterase family protein contains Interpro entry IPR000379 2 14 9 At3g26855 hypothetical protein 2 14 10 At3g27010 "TCP family transcription factor, putative similar to PCF2 [(GI:2580440) Oryza sativa]" 2 14 11 At3g27060 "ribonucleoside-diphosphate reductase small chain, putative / ribonucleotide reductase, putative similar to ribonucleotide reductase R2 [Nicotiana tabacum] GI:1044912; contains Pfam profile PF00268: Ribonucleotide reductase, small chain" 2 14 12 At3g30150 hypothetical protein 2 14 13 At3g30220 hypothetical protein 2 14 14 At3g30440 "Ulp1 protease family protein contains Pfam profile PF02902: Ulp1 protease family, C-terminal catalytic domain" 2 14 15 At3g30500 "hypothetical protein includes At2g24900, At5g35040, At3g30500, At4g07690" 2 14 16 At3g30710 "hypothetical protein similar to Arginine-tRNA-protein transferase 1 (EC 2.3.2.8)(R-transferase 1) (Arginyltransferase 1) (Arginyl-tRNA--protein transferase 1)(SP:Q9Z2A5) {Mus musculus}; similar to MRP homologs in mycobacteria (SP:P53382), which belong to the MR?/NBP35 family of ATP-binding proteins." 2 14 17 At3g30755 hypothetical protein 2 14 18 At3g31370 hypothetical protein contains similarity to hypothetical proteins 2 14 19 At3g31540 hypothetical protein 2 14 20 At3g44720 prephenate dehydratase family protein similar to bacterial PheA gene products 2 14 21 At3g44760 hypothetical protein 2 14 22 At3g44920 "cation/hydrogen exchanger, putative (CHX11) monovalent cation:proton antiporter family 2 (CPA2) member, PMID:11500563" 2 14 23 At3g44970 cytochrome P450 family protein similar to Cytochrome P450 85 (SP:Q43147) {Lycopersicon esculentum}; contains Pfam profile: PF00067 cytochrome P450 2 14 24 At3g45120 hypothetical protein 2 14 25 At3g45180 ubiquitin family protein contains INTERPRO:IPR000626 ubiquitin domain 2 15 1 At3g45390 "lectin protein kinase family protein contains Protein kinases ATP-binding region signature, Prosite:PS00107 and Legume lectins beta-chain signature, Prosite:PS00307" 2 15 2 At3g45443 expressed protein 2 15 3 At3g48260 "protein kinase family protein contains protein kinase domain, Pfam:PF00069" 2 15 4 At3g48320 "cytochrome P450 71A21, putative (CYP71A21) identical to Cytochrome P450 71A21 (SP:Q9STL2) [Arabidopsis thaliana]" 2 15 5 At3g48490 expressed protein 2 15 6 At3g48550 "expressed protein putative zinc-finger protein - Arabidopsis thaliana,PID:g4406777" 2 15 7 At3g48730 "glutamate-1-semialdehyde 2,1-aminomutase 2 (GSA 2) / glutamate-1-semialdehyde aminotransferase 2 (GSA-AT 2) identical to GSA2 [SP|Q42522]" 2 15 8 At3g48790 "serine C-palmitoyltransferase, putative similar to serine palmitoyltransferase from Solanum tuberosum [GI:4995890], Homo sapiens [SP|O15270], Mus musculus [SP|P97363]" 2 15 9 At3g48950 glycoside hydrolase family 28 protein / polygalacturonase (pectinase) family protein weak similarity to SP|P27644 Polygalacturonase (EC 3.2.1.15) (Pectinase) {Agrobacterium tumefaciens}; contains PF00295: Glycosyl hydrolases family 28 2 15 10 At3g49010 60S ribosomal protein L13 (RPL13B) / breast basic conserved protein 1-related (BBC1) 2 15 11 At3g51860 "cation exchanger, putative (CAX3) similar to high affinity calcium antiporter CAX1 [Arabidopsis thaliana] gi|9256741|gb|AAB05913; Ca2+:Cation Antiporter (CaCA) Family member PMID:11500563; non-consensus AT-acceptor splice site at intron 1" 2 15 12 At3g51895 sulfate transporter (ST1) identical to sulfate transporter [Arabidopsis thaliana] GI:2285885 2 15 13 At3g52050 "5'-3' exonuclease family protein similar to DNA polymerase type I [Rhodothermus sp. 'ITI 518'] gi|4090935|gb|AAC98908 ; contains Pfam profile PF02739: 5'-3' exonuclease, N-terminal resolvase-like domain" 2 15 14 At3g52080 "cation/hydrogen exchanger, putative (CHX28) monovalent cation:proton antiporter family 2 (CPA2) member, PMID:11500563" 2 15 15 At3g52230 expressed protein 2 15 16 At3g52270 hypothetical protein 2 15 17 At3g52440 "Dof-type zinc finger domain-containing protein DNA binding protein - Hordeum vulgare,PID:e1334094" 2 15 18 At3g52500 aspartyl protease family protein contains Pfam PF00026: eukaryotic aspartyl protease 2 15 19 At3g55010 "phosphoribosylformylglycinamidine cyclo-ligase, chloroplast / phosphoribosyl-aminoimidazole synthetase / AIR synthase (PUR5) identical to phosphoribosylformylglycinamidine cyclo-ligase, chloroplast precursor SP:Q05728 from [Arabidopsis thaliana]; contains Pfam profiles: PF02769 AIR synthase related protein, C-terminal domain, PF00586 AIR synthase related protein, N-terminal domain" 2 15 20 At3g55060 expressed protein contains weak similarity to intracellular protein transport protein USO1 (Swiss-Prot:P25386) [Saccharomyces cerevisiae]; expression supported by MPSS 2 15 21 At3g55220 "splicing factor, putative contains CPSF A subunit region (PF03178); contains weak WD-40 repeat (PF00400); similar to Splicing factor 3B subunit 3 (SF3b130)/spliceosomal protein/Splicing factor 3B subunit 3 (SAP 130)(KIAA0017)(SP:Q15393) Homo sapiens, EMBL:HSAJ1443_1" 2 15 22 At3g55280 60S ribosomal protein L23A (RPL23aB) various ribosomal L23a proteins 2 15 23 At3g55460 "SC35-like splicing factor, 30 kD (SCL30) nearly identical to SC35-like splicing factor SCL30, 30 kD [Arabidopsis thaliana] GI:9843657; Serine/arginine-rich protein/putative splicing factor, Arabidopdis thaliana, EMBL:AF099940; contains Pfam profile PF00076: RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)" 2 15 24 At3g55530 "zinc finger (C3HC4-type RING finger) family protein contains Pfam profile: PF00097 zinc finger, C3HC4 type (RING finger)" 2 15 25 At3g55700 "UDP-glucoronosyl/UDP-glucosyl transferase family protein glucuronosyl transferase homolog, Lycopersicon esculentum, PIR:S39507 ;contains Pfam profile: PF00201 UDP-glucoronosyl and UDP-glucosyl transferase" 2 16 1 At3g55740 proline transporter 2 (ProT2) identical to proline transporter 2 GI:1769903 from [Arabidopsis thaliana] 2 16 2 At3g58610 "ketol-acid reductoisomerase identical to ketol-acid reductoisomerase, chloroplast precursor (EC 1.1.1.86) (Acetohydroxy-acid reductoisomerase) (Alpha-keto-beta-hydroxylacil reductoisomerase) (Swiss-Prot:Q05758) [Arabidopsis thaliana]" 2 16 3 At3g58670 expressed protein 2 16 4 At3g58840 expressed protein 2 16 5 At3g58900 F-box family protein contains F-box domain Pfam:PF00646 2 16 6 At3g59070 "auxin-responsive protein, putative similar to auxin-induced protein AIR12 (GI:11357190) [Arabidopsis thaliana]" 2 16 7 At3g59110 "protein kinase family protein contains protein kinase domain, Pfam:PF00069" 2 16 8 At3g59290 "epsin N-terminal homology (ENTH) domain-containing protein contains Pfam PF01417: ENTH domain. ENTH (Epsin N-terminal homology) domain; similar to Af10-protein - Avena fatua, EMBL:U80041" 2 16 9 At3g59330 "anthocyanin-related membrane protein family similar to anthocyanin-related membrane protein 1 (GI:16416383), anthocyanin-related membrane protein 2 (GI:16416385), anthocyanin-related membrane protein 3 (GI:16416387) [Arabidopsis thaliana]" 2 16 10 At3g62000 O-methyltransferase family 3 protein several O-methyltransferases - different species; contains Pfam 01596 O-methyltransferase domain 2 16 11 At3g62040 haloacid dehalogenase-like hydrolase family protein similarity to SP|P53078 SSM1 protein {Saccharomyces cerevisiae}; contains InterPro accession IPR005834: Haloacid dehalogenase-like hydrolase 2 16 12 At3g62220 "serine/threonine protein kinase, putative similar to Pto kinase interactor 1 (Pti1)[Lycopersicon esculentum] gi|3668069|gb|AAC61805" 2 16 13 At3g62280 "GDSL-motif lipase/hydrolase family protein similar to Enod8.1 [Medicago truncatula] GI:18390045; contains InterPro Entry IPR001087 Lipolytic enzyme, G-D-S-L family" 2 16 14 At3g62440 F-box family protein contains F-box domain Pfam:PF00646 2 16 15 At3g62500 expressed protein hypothetical proteins - Arabidopsis thaliana; expression supported by MPSS 2 16 16 At3g62670 two-component responsive regulator family protein / response regulator family protein contains Pfam profile: PF00072 response regulator receiver domain 2 16 17 At3g62730 "expressed protein DESSICATION-RELATED PROTEIN PCC13-62 PRECURSOR - Craterostigma plantagineum, PIR:E45509" 2 16 18 At4g01600 GRAM domain-containing protein / ABA-responsive protein-related similar to ABA-responsive protein [Hordeum vulgare] GI:4103635; contains Pfam profile PF02893: GRAM domain 2 16 19 At4g01650 expressed protein 2 16 20 At4g01800 "preprotein translocase secA subunit, putative similar to preprotein translocase secA subunit, chloroplast [precursor] SP:Q9SYI0 from [Arabidopsis thaliana]; non-consensus GA donor splice site at exon 4" 2 16 21 At4g01860 transducin family protein / WD-40 repeat family protein contains ten G-protein beta-subunit (beta-transducin) WD-40 repeats 2 16 22 At4g01980 hypothetical protein contains similarity to hypothetical proteins of [Arabidopsis thaliana] 2 16 23 At4g02020 zeste-like protein 1 (EZA1) identical to enhancer of zeste-like protein 1(EZA1) (GI:4185507) [Arabidopsis thaliana]; similar to polycomb group [Arabidopsis thaliana] GI:1903019 (curly leaf); contains Pfam profile PF00856: SET domain 2 16 24 At4g02180 DC1 domain-containing protein contains Pfam profile PF03107: DC1 domain 2 16 25 At4g02210 expressed protein 2 17 1 At4g05150 octicosapeptide/Phox/Bem1p (PB1) domain-containing protein various predicted proteins contains Pfam profile PF00564: PB1 domain 2 17 2 At4g05210 bacterial transferase hexapeptide repeat-containing protein similar to SP|P32203 UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase (EC 2.3.1.-) {Yersinia enterocolitica}; contains Pfam profile PF00132: Bacterial transferase hexapeptide (three repeats) 2 17 3 At4g05380 "AAA-type ATPase family protein contains similarity to mitochondrial ATPase (AAA family) Bcs1p, Saccharomyces cerevisiae, Swiss Prot:P32839" 2 17 4 At4g05440 temperature sensing protein-related contains weak similarity to D123 (GI:1236114) [Rattus norvegicus] 2 17 5 At4g05630 expressed protein 2 17 6 At4g06479 hypothetical protein 2 17 7 At4g07340 replication protein-related contains similarity to Xenopus laevis replication protein A1 (SW:RFA1_XENLA); contains non-consensus (GC) donor splice site at intron 3 2 17 8 At4g07430 "hypothetical protein similar to At2g10840, At5g35280, At2g10500, At2g05860, At4g07310, At1g39270" 2 17 9 At4g10570 ubiquitin carboxyl-terminal hydrolase family protein similar to ubiquitin-specific protease UBP5 [Arabidopsis thaliana] GI:6648604; contains Pfam profile PF00443: Ubiquitin carboxyl-terminal hydrolase 2 17 10 At4g10620 expressed protein 2 17 11 At4g10800 "expressed protein predicted proteins, Arabidopsis thaliana" 2 17 12 At4g10845 hypothetical protein 2 17 13 At4g10970 expressed protein 2 17 14 At4g11040 "protein phosphatase 2C, putative / PP2C, putative phosphoprotein phosphatase (EC 3.1.3.16) 2C - Arabidopsis thaliana, PIR2:S55457" 2 17 15 At4g11190 disease resistance-responsive family protein / dirigent family protein similar to dirigent protein [Forsythia x intermedia] gi|6694693|gb|AAF25357; similar to disease resistance response protein 206-d [Pisum sativum] gi|508844|gb|AAB18669 2 17 16 At4g11240 serine/threonine protein phosphatase PP1 isozyme 6 (PP1BG) (TOPP6) identical to SP|P48486 Serine/threonine protein phosphatase PP1 isozyme 6 (EC 3.1.3.16) {Arabidopsis thaliana} 2 17 17 At4g13980 heat shock transcription factor family protein contains Pfam profile: PF00447 HSF-type DNA-binding domain 2 17 18 At4g14030 "selenium-binding protein, putative contains Pfam profile PF05694: 56kDa selenium binding protein (SBP56); identical to Putative selenium-binding protein (Swiss-Prot:O23264) [Arabidopsis thaliana]; similar to selenium binding protein (GI:15485232) [Arabidopsis thaliana]; identical to cDNA from partial mRNA for selenium binding protein (sbp gene) GI:15485231" 2 17 19 At4g14160 "transport protein, putative similar to Swiss-Prot:Q15436 protein transport protein Sec23A [Homo sapiens]" 2 17 20 At4g14210 "phytoene dehydrogenase, chloroplast / phytoene desaturase (PDS) identical to SP|Q07356 Phytoene dehydrogenase, chloroplast precursor (EC 1.14.99.-) (Phytoene desaturase){Arabidopsis thaliana}; high similarity to phytoene desaturase [Lycopersicon esculentum][GI:19287]" 2 17 21 At4g14340 casein kinase I (CKI1) identical to casein kinase I [Arabidopsis thaliana] gi|1103318|emb|CAA55395 2 17 22 At4g14380 expressed protein 2 17 23 At4g14510 "expressed protein contains Pfam domain, PF04581: Protein of unknown function (DUF578)" 2 17 24 At4g14550 auxin-responsive AUX/IAA family protein identical to IAA14 (GI:972931) [Arabidopsis thaliana]; similar to SP|Q38825 Auxin-responsive protein IAA7 (Indoleacetic acid-induced protein 7) {Arabidopsis thaliana} 2 17 25 At4g16930 "disease resistance protein (TIR-NBS-LRR class), putative domain signature TIR-NBS exists, suggestive of a disease resistance protein." 2 18 1 At4g16970 "protein kinase family protein contains protein kinase domain, Pfam:PF00069" 2 18 2 At4g17130 hypothetical protein 2 18 3 At4g17190 farnesyl pyrophosphate synthetase 2 (FPS2) / FPP synthetase 2 / farnesyl diphosphate synthase 2 identical to SP|Q43315 Farnesyl pyrophosphate synthetase 2 (FPP synthetase 2) (FPS 2) (Farnesyl diphosphate synthetase 2) [Includes: Dimethylallyltransferase (EC 2.5.1.1); Geranyltranstransferase (EC 2.5.1.10)] {Arabidopsis thaliana} 2 18 4 At4g17350 expressed protein 2 18 5 At4g17420 "expressed protein contains Pfam domain, PF01987: Protein of unknown function" 2 18 6 At4g17570 zinc finger (GATA type) family protein 2 18 7 At4g17615 calcineurin B-like protein 1 (CBL1) identical to calcineurin B-like protein 1 (GI:3309082) [Arabidopsis thaliana] 2 18 8 At4g20200 "terpene synthase/cyclase family protein 5-epi-aristolochene synthase, Nicotiana tabacum, PATX:G505588" 2 18 9 At4g20260 DREPP plasma membrane polypeptide family protein contains Pfam profile: PF05558 DREPP plasma membrane polypeptide 2 18 10 At4g20420 tapetum-specific protein-related similar to SaTAP 35 [Sinapis alba] GI:408108 2 18 11 At4g20460 "NAD-dependent epimerase/dehydratase family protein similar to UDP-galactose 4-epimerase from Cyamopsis tetragonoloba GI:3021357 [EMBL:AJ005082], Bacillus subtilis SP|P55180; contains Pfam profile PF01370 NAD dependent epimerase/dehydratase family" 2 18 12 At4g20770 pentatricopeptide (PPR) repeat-containing protein contains Pfam profile PF01535: PPR repeat 2 18 13 At4g20830 FAD-binding domain-containing protein similar to SP|P30986 reticuline oxidase precursor (Berberine-bridge-forming enzyme) (BBE) (Tetrahydroprotoberberine synthase) [Eschscholzia californica]; contains PF01565 FAD binding domain 2 18 14 At4g21010 "transcription initiation factor-related contains weak similarity to Transcription initiation factor IIE, beta subunit (TFIIE-beta) (Swiss-Prot:P29084) [Homo sapiens]" 2 18 15 At4g21070 "BRCT domain-containing protein / zinc finger (C3HC4-type RING finger) family protein (BRCA1) contains Pfam profiles PF00533: BRCA1 C Terminus (BRCT) domain, PF00097: Zinc finger, C3HC4 type (RING finger), PF01535: PPR repeat; identical to cDNA BRCA1 GI:28372473" 2 18 16 At4g23640 "potassium transporter / tiny root hair 1 protein (TRH1) identical to tiny root hair 1 protein [Arabidopsis thaliana] gi|11181958|emb|CAC16137; KUP/HAK/KT Transporter family member, PMID:11500563; identical to cDNA mRNA for tiny root hair 1 protein (trh1) GI:11181957" 2 18 17 At4g23690 disease resistance-responsive family protein / dirigent family protein similar to disease resistance response protein 206-d [Pisum sativum] gi|508844|gb|AAB18669; similar to dirigent protein [Forsythia x intermedia] gi|6694693|gb|AAF25357 2 18 18 At4g23870 "expressed protein predicted proteins, Arabidopsis thaliana" 2 18 19 At4g23900 nucleoside diphosphate kinase 4 (NDK4) contains Pfam PF00334 : Nucleoside diphosphate kinase domain; identical to nucleoside diphosphate kinase 4 (GI:11990430) [Arabidopsis thaliana] 2 18 20 At4g24050 short-chain dehydrogenase/reductase (SDR) family protein contains INTERPRO family IPR002198 Short-chain dehydrogenase/reductase (SDR) superfamily 2 18 21 At4g24110 expressed protein 2 18 22 At4g24265 expressed protein 2 18 23 At4g24290 expressed protein 2 18 24 At4g26870 "aspartyl-tRNA synthetase, putative / aspartate--tRNA ligase, putative simialr to aspartate-tRNA ligase (EC 6.1.1.12) from Drosophila melanogaster GI:4512034, Homo sapiens SP|P14868, Rattus norvegicus SP|P15178; contains Pfam profile PF00152 tRNA synthetases class II (D, K and N)" 2 18 25 At4g26920 hypothetical protein 2 19 1 At4g27070 "tryptophan synthase, beta subunit 2 (TSB2) identical to SP|25269" 2 19 2 At4g27120 expressed protein 2 19 3 At4g27310 "zinc finger (B-box type) family protein zinc-finger protein S3574, Oryza sativa, PIR3:JE0113" 2 19 4 At4g27370 "myosin family protein contains Pfam profiles: PF00063 myosin head (motor domain), PF00612 IQ calmodulin-binding motif" 2 19 5 At4g27530 expressed protein 2 19 6 At4g27585 band 7 family protein similar to stomatin-like protein [Zea mays] GI:7716464; contains Pfam profile PF01145: SPFH domain / Band 7 family 2 19 7 At4g30160 "villin, putative similar to villin 2 (VLN2) [Arabidopsis thaliana] GI:3415115, villin 3 (VLN3) [Arabidopsis thaliana] GI:3415117; contains Pfam profiles PF00626: Gelsolin repeat, PF02209: Villin headpiece domain" 2 19 8 At4g30210 "NADPH-cytochrome p450 reductase, putative / NADPH-ferrihemoprotein reductase, putative similar to NADPH-cytochrome P450 oxydoreductase from [Populus balsamifera subsp. trichocarpa x Populus deltoides] GI:13183564, GI:13183566" 2 19 9 At4g30360 "cyclic nucleotide-regulated ion channel, putative (CNGC17) similar to cyclic nucleotide and calmodulin-regulated ion channel cngc5 GI:4581205 from [Arabidopsis thaliana]" 2 19 10 At4g30410 expressed protein similar to cDNA bHLH transcription factor (bHLH eta gene) gi:32563007 2 19 11 At4g30550 "glutamine amidotransferase class-I domain-containing protein similar to defense-related protein [Brassica carinata] GI:14009290, component of aniline dioxygenase (GMP synthase like protein) - Acinetobacter sp.,PID:d1013698; contains Pfam profile PF00117: glutamine amidotransferase class-I" 2 19 12 At4g30610 serine carboxypeptidase S10 family protein similar to Serine carboxypeptidase II chains A and B (SP:P08819) (EC 3.4.16.6) [Triticum aestivum (Wheat)]; 2 19 13 At4g30760 "expressed protein contains Pfam profile PF04396: Protein of unknown function, DUF537" 2 19 14 At4g30820 cyclin-dependent kinase-activating kinase assembly factor-related / CDK-activating kinase assembly factor-related contains similarity to CDK-activating kinase assembly factor MAT1 (RING finger protein MAT1) (Menage a trois) (CDK7/cyclin H assembly factor) (Swiss-Prot:P51950) [Marthasterias glacialis] 2 19 15 At4g33310 expressed protein 2 19 16 At4g33370 "DEAD-box protein abstrakt, putative RNA helicase DBP2 - Saccharomyces cerevisiae, PID:g5272" 2 19 17 At4g33520 "metal-transporting P-type ATPase, putative (PAA1) nearly identical to gi:2668492; contains Pfam heavy-metal-associated domain PF00403" 2 19 18 At4g33580 carbonic anhydrase family protein / carbonate dehydratase family protein similar to SP|P46512 Carbonic anhydrase 1 (EC 4.2.1.1) (Carbonate dehydratase 1) {Flaveria linearis}; contains Pfam profile PF00484: Carbonic anhydrase 2 19 19 At4g33730 "pathogenesis-related protein, putative similar to SP|P33154 Pathogenesis-related protein 1 precursor (PR-1) {Arabidopsis thaliana}; contains Pfam profile PF00188: SCP-like extracellular protein" 2 19 20 At4g33790 "acyl CoA reductase, putative similar to acyl CoA reductase [Simmondsia chinensis] GI:5020215; contains Pfam profile PF03015: Male sterility protein; No start codon identified, may contain anomalous splicing at 5' end." 2 19 21 At4g33930 "glycine-rich protein hyphally regulated protein, Candida albicans, PIR2:S58135" 2 19 22 At4g33980 expressed protein 2 19 23 AT5G57480 PC-1 2 19 24 3XSSC PC-1 2 19 25 AT1G29930 PC-1 2 20 1 3XSSC PC-1 2 20 2 AT3G44150 PC-1 2 20 3 3XSSC PC-1 2 20 4 AT4G00810 PC-1 2 20 5 3XSSC PC-1 2 20 6 At4g36540 "basic helix-loop-helix (bHLH) family protein contains Pfam domain, PF00010: Helix-loop-helix DNA-binding domain" 2 20 7 At4g36580 "AAA-type ATPase family protein contains Pfam domain, PF00004: ATPase, AAA family ('A'TPases 'A'ssociated with diverse cellular 'A'ctivities)" 2 20 8 At4g36730 G-box binding factor 1 (GBF1) identical to G-box binding factor 1 SP:P42774 from [Arabidopsis thaliana]; contains Pfam profile: PF00170 bZIP transcription factor 2 20 9 At4g36760 aminopeptidase P similar to Xaa-Pro aminopeptidase 2 [Lycopersicon esculentum] GI:15384991; contains Pfam profile PF00557: metallopeptidase family M24 2 20 10 At4g36925 expressed protein 2 20 11 At4g36990 heat shock factor protein 4 (HSF4) / heat shock transcription factor 4 (HSTF4) identical to heat shock transcription factor 4 (HSF4) SP:Q96320 from [Arabidopsis thaliana] 2 20 12 At4g37170 pentatricopeptide (PPR) repeat-containing protein contains Pfam profile PF01535: PPR repeat 2 20 13 At4g37220 "stress-responsive protein, putative similar to cold acclimation WCOR413-like protein gamma form [Hordeum vulgare] gi|18449100|gb|AAL69988; similar to stress-regulated protein SAP1 [Xerophyta viscosa] gi|21360378|gb|AAM47505" 2 20 14 At4g39810 "exonuclease family protein contains exonuclease domain, Pfam:PF00929" 2 20 15 At4g39860 expressed protein 2 20 16 At4g40020 hypothetical protein 2 20 17 At4g40060 homeobox-leucine zipper protein 16 (HB-16) / HD-ZIP transcription factor 16 identical to homeodomain leucine-zipper protein ATHB-16 (GP:5668909|) {Arabidopsis thaliana} 2 20 18 At5g01100 expressed protein similar to axi 1 [Nicotiana tabacum] GI:559921; contains Pfam profile PF03138: Plant protein family 2 20 19 At5g01160 e-cadherin binding protein-related contains weak similarity to E-cadherin binding protein E7 [Mus musculus GP|9622093|gb|AAF89617 2 20 20 At5g01290 "mRNA capping enzyme family protein similar to mRNA capping enzyme [Xenopus laevis] GI:7239232; contains Pfam profiles PF01331: mRNA capping enzyme catalytic domain, PF03919: mRNA capping enzyme C-terminal domain" 2 20 21 At5g01350 expressed protein 2 20 22 At5g04050 maturase-related contains similarity to maturase proteins from several species 2 20 23 At5g04120 phosphoglycerate/bisphosphoglycerate mutase family protein low similarity to SP|P36623 Phosphoglycerate mutase (EC 5.4.2.1) {Schizosaccharomyces pombe}; contains Pfam profile PF00300: phosphoglycerate mutase family 2 20 24 At5g04280 glycine-rich RNA-binding protein 2 20 25 At5g04350 self-incompatibility protein-related similar to self-incompatibility [Papaver nudicaule] GI:3097262 2 21 1 At5g04520 expressed protein ; expression supported by MPSS 2 21 2 At5g04600 RNA recognition motif (RRM)-containing protein contains InterPro entry IPR000504: RNA-binding region RNP-1 (RNA recognition motif) (RRM) 2 21 3 At5g04770 amino acid permease family protein similar to cationic amino acid transporter-1 [Rattus norvegicus] GI:1589917; contains Pfam profile PF00324: Amino acid permease 2 21 4 At5g04810 pentatricopeptide (PPR) repeat-containing protein contains Pfam profile: PF01535 PPR repeat 2 21 5 At5g07350 tudor domain-containing protein / nuclease family protein contains Pfam domains PF00567: Tudor domain and PF00565: Staphylococcal nuclease homologue 2 21 6 At5g07400 forkhead-associated domain-containing protein / FHA domain-containing protein 2 21 7 At5g07570 glycine/proline-rich protein contains similarity to flagelliform silk protein [Nephila clavipes] gi|7106224|gb|AAF36090 2 21 8 At5g07630 nuclear division RFT family protein low similarity to SP|P38206 Nuclear division RFT1 protein {Saccharomyces cerevisiae}; contains Pfam profile PF04506: Rft protein 2 21 9 At5g07820 expressed protein 2 21 10 At5g07880 "SNAP25 homologous protein, putative / synaptosomal-associated protein SNAP25-like, putative (SNAP29) identical to Swiss-Prot:Q9SD96 SNAP25 homologous protein SNAP29 (AtSNAP29)(Synaptosomal-associated protein SNAP25-like 2) [Arabidopsis thaliana]; contains Pfam profile: PF05739 SNARE domain" 2 21 11 At5g08060 "expressed protein sigma factor F inhibitor spoIIAB, Bacillus megaterium, PIR:B48402" 2 21 12 At5g08110 "DEAD/DEAH box helicase, putative several putative ATP-dependent helicases" 2 21 13 At5g11140 hypothetical protein 2 21 14 At5g11180 "glutamate receptor family protein (GLR2.6) plant glutamate receptor family, PMID:11379626" 2 21 15 At5g11350 endonuclease/exonuclease/phosphatase family protein contains Pfam profile PF03372: Endonuclease/Exonuclease/phosphatase family 2 21 16 At5g11410 "protein kinase family protein contains eukaryotic protein kinase domain, INTERPRO:IPR000719" 2 21 17 At5g11590 "AP2 domain-containing transcription factor, putative similar to transcription factor TINY (GI:1246403) [Arabidopsis thaliana]" 2 21 18 At5g11630 expressed protein 2 21 19 At5g11810 expressed protein 2 21 20 At5g11870 expressed protein 2 21 21 At5g15010 pentatricopeptide (PPR) repeat-containing protein contains Pfam profile PF01535: PPR repeat 2 21 22 At5g15070 expressed protein 2 21 23 At5g15230 gibberellin-regulated protein 4 (GASA4) / gibberellin-responsive protein 4 identical to SP|P46690 Gibberellin-regulated protein 4 precursor {Arabidopsis thaliana} 2 21 24 At5g15280 pentatricopeptide (PPR) repeat-containing protein contains Pfam profile PF01535: PPR repeat 2 21 25 At5g15460 expressed protein 2 22 1 At5g15510 expressed protein 2 22 2 At5g15660 F-box family protein contains Pfam PF00646: F-box domain 2 22 3 At5g15720 GDSL-motif lipase/hydrolase family protein similar to family II lipase EXL3 (GI:15054386) and EXL2 (GI:15054384) [Arabidopsis thaliana]; contains Pfam profile PF00657: Lipase/Acylhydrolase with GDSL-like motif 2 22 4 At5g18360 "disease resistance protein (TIR-NBS-LRR class), putative domain signature TIR-NBS-LRR exists, suggestive of a disease resistance protein." 2 22 5 At5g18410 expressed protein similar to p53 inducible protein [Homo sapiens] GI:5616320 2 22 6 At5g18550 "zinc finger (CCCH-type) family protein contains Pfam domain, PF00642: Zinc finger C-x8-C-x5-C-x3-H type (and similar)" 2 22 7 At5g18610 "protein kinase family protein contains eukaryotic protein kinase domain, PROSITE:PS00107" 2 22 8 At5g18740 expressed protein predicted proteins - Arabidopsis thaliana; expression supported by MPSS 2 22 9 At5g18800 NADH-ubiquinone oxidoreductase 19 kDa subunit (NDUFA8) family protein contains Pfam profile: PF05850 NADH-ubiquinone oxidoreductase 19 kDa subunit 2 22 10 At5g18940 Mo25 family protein similar to SP|Q06138 MO25 protein {Mus musculus}; contains Pfam profile PF03204: Mo25 protein family 2 22 11 At5g18990 pectinesterase family protein contains Pfam profile: PF01095 pectinesterase 2 22 12 At5g22320 "leucine-rich repeat family protein contains leucine rich repeat (LRR) domains, Pfam:PF00560" 2 22 13 At5g22370 "ATP-binding family protein contains Pfam domain, PF03029: Conserved hypothetical ATP binding protein" 2 22 14 At5g22545 expressed protein 2 22 15 At5g22580 expressed protein 2 22 16 At5g22740 "glycosyl transferase family 2 protein similar to beta-(1-3)-glucosyl transferase GB:AAC62210 GI:3687658 from [Bradyrhizobium japonicum], cellulose synthase from Agrobacterium tumeficiens [gi:710492] and Agrobacterium radiobacter [gi:710493]; contains Pfam glycosyl transferase, group 2 family protein domain PF00535" 2 22 17 At5g22790 expressed protein 2 22 18 At5g22950 "SNF7 family protein contains Pfam domain, PF03357: SNF7 family" 2 22 19 At5g23010 2-isopropylmalate synthase 3 (IMS3) identical to 2-isopropylmalate synthase (IMS3) [Arabidopsis thaliana] GI:15983745; identical to cDNA 2-isopropylmalate synthase (IMS3) GI:15983744 2 22 20 At5g25590 expressed protein contains Pfam profile PF04783: Protein of unknown function (DUF630) 2 22 21 At5g25750 hypothetical protein 2 22 22 At5g25890 auxin-responsive protein / indoleacetic acid-induced protein 28 (IAA28) identical to SP|Q9XFM0|AXIS_ARATH Auxin-responsive protein IAA28 (Indoleacetic acid-induced protein 28) {Arabidopsis thaliana} 2 22 23 At5g25950 "hypothetical protein various predicted proteins, Arabidopsis thaliana contains Pfam profile PF03080: Arabidopsis proteins of unknown function" 2 22 24 At5g26100 hypothetical protein 2 22 25 At5g26160 expressed protein 2 23 1 At5g26320 meprin and TRAF homology domain-containing protein / MATH domain-containing protein similar to ubiquitin-specific protease 12 [Arabidopsis thaliana] GI:11993471; contains Pfam profile PF00917: MATH domain 2 23 2 At5g26594 two-component responsive regulator family protein / response regulator family protein contains Pfam profile: PF00072 response regulator receiver domain 2 23 3 At5g32600 hypothetical protein 2 23 4 At5g32775 hypothetical protein 2 23 5 At5g33390 glycine-rich protein similar to nuclear antigen EBNA-1 (GI:3342234) {Cercopithecine herpesvirus 15} 2 23 6 At5g34358 hypothetical protein 2 23 7 At5g34895 "hypothetical protein similar to At2g04970, At2g15200, At1g32830, At2g14140, At3g30450, At4g03990, At3g47270, At2g02200" 2 23 8 At5g34940 "glycosyl hydrolase family 79 N-terminal domain-containing protein similar to beta-glucuronidase precursor [Scutellaria baicalensis] GI:8918740; contains Pfam profile PF03662: Glycosyl hydrolase family 79, N-terminal domain" 2 23 9 At5g35190 "proline-rich extensin-like family protein contains proline-rich extensin domains, INTERPRO:IPR002965" 2 23 10 At5g35230 hypothetical protein 2 23 11 At5g38386 F-box family protein contains F-box domain Pfam:PF00646 2 23 12 At5g38430 "ribulose bisphosphate carboxylase small chain 1B / RuBisCO small subunit 1B (RBCS-1B) (ATS1B) identical to SP|P10796 Ribulose bisphosphate carboxylase small chain 1B, chloroplast precursor (EC 4.1.1.39) (RuBisCO small subunit 1B) {Arabidopsis thaliana}" 2 23 13 At5g38595 hypothetical protein 2 23 14 At5g38650 proteasome maturation factor UMP1 family protein contains Pfam profile PF05348: Proteasome maturation factor UMP1 2 23 15 At5g38830 tRNA synthetase class I (C) family protein similar to SP|Q06752 Cysteinyl-tRNA synthetase (EC 6.1.1.16) (Cysteine--tRNA ligase) (CysRS) {Bacillus subtilis}; contains Pfam profile PF01406: tRNA synthetases class I (C) 2 23 16 At5g38895 "zinc finger (C3HC4-type RING finger) family protein contains Pfam profile: PF00097 zinc finger, C3HC4 type (RING finger)" 2 23 17 At5g39050 "transferase family protein similar to anthocyanin 5-aromatic acyltransferase from Gentiana triflora GI:4185599, malonyl CoA:anthocyanin 5-O-glucoside-6'''-O-malonyltransferase from Perilla frutescens GI:17980232, Salvia splendens GI:17980234; contains Pfam profile PF02458 transferase family" 2 23 18 At5g39130 "germin-like protein, putative identical to germin-like protein subfamily 1 member 16 (SP|Q9FIC8)" 2 23 19 At5g41970 expressed protein contains Pfam profile PF03690: Uncharacterised protein family (UPF0160) 2 23 20 At5g42020 luminal binding protein 2 (BiP-2) (BP2) similar to SWISS-PROT: Q39043; GI:1303695; luminal binding protein (BiP) [Arabidopsis thaliana] 2 23 21 At5g42170 "family II extracellular lipase, putative similar to family II lipase EXL3 [Arabidopsis thaliana] GI:15054386; contains InterPro Entry IPR001087 Lipolytic enzyme, G-D-S-L family" 2 23 22 At5g42230 serine carboxypeptidase S10 family protein similar to Serine carboxypeptidase II chains A and B (SP:P08819) (EC 3.4.16.6) [Triticum aestivum (Wheat)] 2 23 23 At5g42390 metalloendopeptidase identical to chloroplast processing enzyme metalloendopeptidase [Arabidopsis thaliana] gi|2827039|gb|AAC39482 2 23 24 At5g42450 pentatricopeptide (PPR) repeat-containing protein contains Pfam profile PF01535: PPR repeat 2 23 25 At5g42635 glycine-rich protein 2 24 1 At5g42680 "expressed protein contains Pfam profile PF04759: Protein of unknown function, DUF617" 2 24 2 At5g45250 "disease resistance protein (TIR-NBS-LRR class), putative (RPS4) domain signature TIR-NBS-LRR exists, suggestive of a disease resistance protein. Identical to RPS4 (GI:11357255). False intron created at intron 2 to escape a frameshift in the BAC sequence." 2 24 3 At5g45280 "pectinacetylesterase, putative similar to pectinacetylesterase precursor GI:1431629 from [Vigna radiata]" 2 24 4 At5g45420 myb family transcription factor contains Pfam profile: PF00249 Myb DNA binding domain 2 24 5 At5g45480 "expressed protein contains Pfam domain, PF04578: Protein of unknown function, DUF594" 2 24 6 At5g45620 "26S proteasome regulatory subunit, putative (RPN9) contains similarity to 26S proteasome subunit p40.5 GI:3618343 from [Homo sapiens]" 2 24 7 At5g45680 "FK506-binding protein 1 (FKBP13) identical to Probable FKBP-type peptidyl-prolyl cis-trans isomerase 3, chloroplast precursor (Ppiase) (Rotamase) (SP:Q9SCY2) / FK506 binding protein 1 (GI:21535744) [Arabidopsis thaliana]; contains Pfam PF00254: peptidyl-prolyl cis-trans isomerase, FKBP-type" 2 24 8 At5g45820 CBL-interacting protein kinase 20 (CIPK20) identical to CBL-interacting protein kinase 20 [Arabidopsis thaliana] gi|14486384|gb|AAK61493 2 24 9 At5g45880 "pollen Ole e 1 allergen and extensin family protein contains Pfam domain, PF01190: Pollen proteins Ole e I family" 2 24 10 At5g48470 expressed protein 2 24 11 At5g48520 expressed protein similar to unknown protein (gb|AAB97010.1) 2 24 12 At5g48657 defense protein-related weak similarity to SP|Q8GYN5 RPM1-interacting protein 4 {Arabidopsis thaliana} 2 24 13 At5g48690 hypothetical protein 2 24 14 At5g48870 "small nuclear ribonucleoprotein, putative / snRNP, putative / Sm protein, putative similar to U6 snRNA-associated Sm-like protein LSm5 [Homo sapiens] SWISS-PROT:Q9Y4Y9" 2 24 15 At5g48930 "transferase family protein similar to anthranilate N-hydroxycinnamoyl/benzoyltransferase from Dianthus caryophyllus [GI:3288180, GI:2239091]; contains Pfam profile PF02458 transferase family" 2 24 16 At5g49080 "proline-rich extensin-like family protein contains proline-rich extensin domains, INTERPRO:IPR002965" 2 24 17 At5g49140 "disease resistance protein (TIR-NBS-LRR class), putative domain signature TIR-NBS-LRR exists, suggestive of a disease resistance protein." 2 24 18 At5g51860 MADS-box protein (AGL72) contains Pfam profile PF00319: SRF-type transcription factor (DNA-binding and dimerisation domain); 2 24 19 At5g51900 cytochrome P450 family similar to cytochrome P450 86A1 (SP:P48422) [Arabidopsis thaliana] 2 24 20 At5g52065 hypothetical protein 2 24 21 At5g52120 F-box family protein / SKP1 interacting partner 3-related contains Pfam profile PF00646: F-box domain 2 24 22 At5g52290 hypothetical protein 2 24 23 At5g52350 exocyst subunit EXO70 family protein strong similarity to unknown protein (emb|CAB83315.1); contains Pfam domain PF03081: Exo70 exocyst complex subunit; 2 24 24 At5g52530 dentin sialophosphoprotein-related contains weak similarity to dentin sialophosphoprotein precursor (Dentin matrix protein-3) (DMP- 3) (Swiss-Prot:P97399) [Mus musculus] 2 24 25 At5g52570 "beta-carotene hydroxylase, putative similar to GI:1575296, beta-carotene hydroxylase" 2 25 1 At5g55230 microtubule associated protein (MAP65/ASE1) family protein low similarity to protein regulating cytokinesis 1 (PRC1) [Homo sapiens] GI:2865521; contains Pfam profile PF03999: Microtubule associated protein (MAP65/ASE1 family) 2 25 2 At5g55290 ATP synthase subunit H family protein contains weak similarity to Vacuolar ATP synthase subunit H (EC 3.6.3.14) (V-ATPase H subunit) (Vacuolar proton pump H subunit) (V-ATPase M9.2 subunit) (V-ATPase 9.2 kDa membrane accessory protein) (Swiss-Prot:P81103) [Bos taurus]; contains Pfam profile PF05493: ATP synthase subunit H 2 25 3 At5g55470 "sodium proton exchanger / Na+/H+ exchanger 4 (NHX4) identical to Na+/H+ exchanger 4 [Arabidopsis thaliana] GI:19919844; Member of The Monovalent Cation:Proton Antiporter (CPA1) Family, PMID:11500563" 2 25 4 At5g55520 expressed protein weak similarity to phragmoplast-associated kinesin-related protein 1 [Arabidopsis thaliana] GI:8745333; expression supported by MPSS 2 25 5 At5g55660 expressed protein similar to unknown protein (pir||T08929) 2 25 6 At5g55720 pectate lyase family protein similar to pectate lyase 1 GP:6606532 from [Musa acuminata] 2 25 7 At5g55893 hypothetical protein 2 25 8 At5g55950 "transporter-related low similarity to UDP-sugar transporter [Drosophila melanogaster] GI:14971008, UDP-glucuronic acid transporter [Homo sapiens] GI:11463949" 2 25 9 At5g58550 tetratricopeptide repeat (TPR)-containing protein contains Pfam profile PF00515 TPR Domain 2 25 10 At5g58600 "expressed protein various predicted proteins, Arabidopsis thaliana and Oryza sativa" 2 25 11 At5g58760 transducin family protein / WD-40 repeat family protein contains 4 WD-40 repeats (PF00400); damage-specific DNA binding protein 2 (GI:10798819) [Homo sapiens] 2 25 12 At5g58790 expressed protein ; expression supported by MPSS 2 25 13 At5g58970 uncoupling protein (UCP2) identical to uncoupling protein GI:4063007 from [Arabidopsis thaliana] 2 25 14 At5g59020 expressed protein 2 25 15 At5g59160 serine/threonine protein phosphatase PP1 isozyme 2 (TOPP2) identical to SP|P48482 Serine/threonine protein phosphatase PP1 isozyme 2 (EC 3.1.3.16) {Arabidopsis thaliana} 2 25 16 At5g59210 "myosin heavy chain-related contains weak similarity to Myosin heavy chain, gizzard smooth muscle (Swiss-Prot:P10587) [Gallus gallus]" 2 25 17 At5g61820 "expressed protein MtN19, Medicago truncatula, EMBL:MTY15367" 2 25 18 At5g61890 "AP2 domain-containing transcription factor family protein similar to RAP2.6 (GP:17065542) {Arabidopsis thaliana}; AP2 domain containing protein, Arabidopsis thaliana, EMBL:ATAF3099" 2 25 19 At5g62070 calmodulin-binding family protein contains Pfam profile PF00612: IQ calmodulin-binding motif 2 25 20 At5g62120 hypothetical protein 2 25 21 At5g62280 expressed protein 2 25 22 At5g62340 invertase/pectin methylesterase inhibitor family protein similar to SP|Q42534 Pectinesterase 2 precursor (EC 3.1.1.11) (Pectin methylesterase 2) (PE 2) {Arabidopsis thaliana}; contains Pfam profile PF04043: Plant invertase/pectin methylesterase inhibitor 2 25 23 At5g62500 "microtubule-associated EB1 family protein similar to EBF3-S (Microtubule-associated protein) [Homo sapiens] GI:12751131; contains Pfam profiles PF00307: Calponin homology (CH) domain, PF03271: EB1 protein" 2 25 24 At5g62560 "armadillo/beta-catenin repeat family protein / U-box domain-containing protein contains Pfam domain, PF00514: Armadillo/beta-catenin-like repeats and Pfam, PF04564: U-box domain" 2 25 25 At5g65100 ethylene insensitive 3 family protein contains Pfam profile: PF04873 ethylene insensitive 3 2 26 1 At5g65165 "succinate dehydrogenase, iron-sulphur subunit, mitochondrial (SDH2-3) nearly identical to mitochondrial succinate dehydrogenase iron-sulphur subunit (sdh2-3) [gi:12049602] from Arabidopsis thaliana" 2 26 2 At5g65300 expressed protein 2 26 3 At5g65360 "histone H3 identical to histone H3 from Zea mays SP|P05203, Medicago sativa GI:166384, Encephalartos altensteinii SP|P08903, Pisum sativum SP|P02300; contains Pfam profile PF00125 Core histone H2A/H2B/H3/H4" 2 26 4 At5g65510 "ovule development protein, putative similar to AINTEGUMENTA (GI:1209099) [Arabidopsis thaliana]" 2 26 5 At5g65570 pentatricopeptide (PPR) repeat-containing protein contains INTERPRO:IPR002885 PPR repeats 2 26 6 At5g65720 "cysteine desulfurase, mitochondrial (NIFS) identical to Cysteine desulfurase, mitochondrial precursor (SP:O49543) {Arabidopsis thaliana}; identical to cDNA GI:12656131; contains Pfam profile PF00266: aminotransferase, class V" 2 26 7 At5g65780 "branched-chain amino acid aminotransferase 5 / branched-chain amino acid transaminase 5 (BCAT5) nearly identical to SP|Q9FYA6 Branched-chain amino acid aminotransferase 5, chloroplast precursor (EC 2.6.1.42) (Atbcat-5) {Arabidopsis thaliana}; contains Pfam profile: PF01063 aminotransferase class IV" 2 26 8 ath-MIR169g miRNA gene Arabidopsis thaliana miR169g stem-loop 2 26 9 ath-MIR156e miRNA gene Arabidopsis thaliana miR156e stem-loop 2 26 10 ath-MIR169n miRNA gene Arabidopsis thaliana miR169n stem-loop 2 26 11 ath-MIR395e miRNA gene Arabidopsis thaliana miR395e stem-loop 2 26 12 3xSSC 3xSSC 2 26 13 3xSSC 3xSSC 2 26 14 3xSSC 3xSSC 2 26 15 3xSSC 3xSSC 2 26 16 At1g34590 hypothetical protein 2 26 17 At1g34710 "hypothetical protein similar to At3g43370, At2g14780, At1g27810, At3g42760, At1g25784, At4g08890" 2 26 18 At1g35140 "phosphate-responsive protein, putative similar to phi-1 (phosphate-induced gene) [Nicotiana tabacum] GI:3759184; contains Pfam profile PF04674: Phosphate-induced protein 1 conserved region" 2 26 19 At1g35190 "oxidoreductase, 2OG-Fe(II) oxygenase family protein low similarity to hyoscyamine 6-dioxygenase hydroxylase from Hyoscyamus niger [GB:P24397][SP|P24397], Atropa belladona [gi:4996123]; contains Pfam domain PF03171, 2OG-Fe(II) oxygenase superfamily" 2 26 20 At1g35420 dienelactone hydrolase family protein low similarity to dienelactone hydrolase [Rhodococcus opacus] GI:23094407; contains Pfam profile PF01738: Dienelactone hydrolase family 2 26 21 At1g35500 hypothetical protein 2 26 22 At1g35650 "Ulp1 protease family protein PF02902: Ulp1 protease family, C-terminal catalytic domain; similar to At1g21020, At3g26530, At1g08760, At1g08740, At2g29240" 2 26 23 At1g35720 annexin 1 (ANN1) identical to annexin (AnnAt1) [Arabidopsis thaliana] GI:4959106 2 26 24 Blank Blank 2 26 25 Blank Blank 3 1 1 atc05 Randomly generated negative control 3 1 2 atc11 Randomly generated negative control 3 1 3 At5g46430 60S ribosomal protein L32 (RPL32B) 3 1 4 atc01 Randomly generated negative control 3 1 5 Alien7 Control: Stratagene Spotreport Alien Oligo 3 1 6 At1g74970 ribosomal protein S9 (RPS9) identical to ribosomal protein S9 [Arabidopsis thaliana] GI:5456946 3 1 7 atc09 Randomly generated negative control 3 1 8 Alien3 Control: Stratagene Spotreport Alien Oligo 3 1 9 At1g02050 "chalcone and stilbene synthase family protein Similar to rice chalcone synthase homolog, gp|U90341|2507617 and anther specific protein, gp|Y14507|2326772" 3 1 10 At1g02080 "transcriptional regulator-related contains Pfam PF04054: CCR4-Not complex component, Not1; contains TIGRFAM TIGR01612: reticulocyte binding protein; similar to General negative regulator of transcription subunit 1 (SP:P25655) {Saccharomyces cerevisiae}; Location of ESTs gb|T44328 and gb|AA395265" 3 1 11 At1g02190 "CER1 protein, putative similar to CER1 GI:1199467 and maize gl1 homolog (glossy1 locus) GI:1209703 from [Arabidopsis thaliana]" 3 1 12 At1g02250 no apical meristem (NAM) family protein contains Pfam PF02365 : No apical meristem (NAM) protein; similar to NAC1 (GI:21554126) (Arabidopsis thaliana) 3 1 13 At1g02410 "cytochrome c oxidase assembly protein CtaG / Cox11 family similar to cytochrome c oxidase assembly protein cox11 GI:1244782 from [Saccharomyces cerevisiae]; similar to Cytochrome c oxidase assembly protein COX11, mitochondrial precursor (SP:Q9Y6N1){Homo sapiens}; contains Pfam PF04442: Cytochrome c oxidase assembly protein CtaG / Cox11" 3 1 14 At1g02470 expressed protein contains non-consensus splice sites; 3 1 15 At1g02660 lipase class 3 family protein contains Pfam profile PF01764: Lipase 3 1 16 At1g02700 expressed protein similar to hypothetical protein GB:CAB80707 GI:7268598 from [Arabidopsis thaliana] 3 1 17 At1g05300 "metal transporter, putative (ZIP5) identical to putative metal transporter ZIP5 [Arabidopsis thaliana] gi|17385784|gb|AAL38432; similar to zinc transporter protein ZIP1 [Glycine max] gi|15418778|gb|AAK37761; member of the Zinc (Zn2+)-Iron (Fe2+) permease (ZIP) family, PMID:11500563" 3 1 18 At1g05360 expressed protein Similar to Arabidopsis hypothetical protein PID:e326839 (gb|Z97337) contains transmembrane domains 3 1 19 At1g05520 "transport protein, putative similar to Swiss-Prot:Q15436 protein transport protein Sec23A [Homo sapiens]" 3 1 20 At1g05575 expressed protein 3 1 21 At1g05710 "ethylene-responsive protein, putative similar to ethylene-inducible ER33 protein [Lycopersicon esculentum] gi|5669656|gb|AAD46413; identical to bHLH transcription factor (bHLH-alpha gene)" 3 1 22 At1g05770 "jacalin lectin family protein similar to gi:6503088 (GB:AAF14583) from [Arabidopsis thaliana] (Proc. Natl. Acad. Sci. U.S.A. 97 (1), 489-494 (2000)); contains Pfam profile PF01419 jacalin-like lectin domain" 3 1 23 At1g05900 endonuclease-related similar to endonuclease III [Homo sapiens] GI:1753174; contains Pfam profile PF00633: Helix-hairpin-helix motif 3 1 24 At1g05940 amino acid permease family protein low similarity to SP|P30823 High-affinity cationic amino acid transporter-1 (CAT-1) {Rattus norvegicus}; contains Pfam profile PF00324: Amino acid permease 3 1 25 At1g08450 calreticulin 3 (CRT3) identical to similar to SP|O04153 Calreticulin 3 precursor {Arabidopsis thaliana} 3 2 1 At1g08510 acyl-[acyl carrier protein] thioesterase / acyl-ACP thioesterase / oleoyl-[acyl-carrier protein] hydrolase / S-acyl fatty acid synthase thioesterase identical to acyl-(acyl carrier protein) thioesterase [Arabidopsis thaliana] GI:804948 3 2 2 At1g08670 epsin N-terminal homology (ENTH) domain-containing protein / clathrin assembly protein-related contains Pfam PF01417: ENTH domain. ENTH (Epsin N-terminal homology) domain;similar to epsin 2b (GI:3894397) [Homo sapiens] 3 2 3 At1g08720 "mitogen-activated protein kinase kinase kinase (MAPKKK) (EDR1) identical to EDR1, a MAP kinase kinase kinase [Arabidopsis thaliana] gi|11127925|gb|AAG31143" 3 2 4 At1g08845 expressed protein 3 2 5 At1g08920 "sugar transporter, putative similar to ERD6 protein {Arabidopsis thaliana} GI:3123712, sugar-porter family proteins 1 and 2 [Arabidopsis thaliana] GI:14585699, GI:14585701; contains Pfam profile PF00083: major facilitator superfamily protein" 3 2 6 At1g09080 luminal binding protein 3 (BiP-3) (BP3) Similar to Arabidopsis luminal binding protein (gb|D89342); contains Pfam domain PF00012: dnaK protein 3 2 7 At1g09155 SKP1 interacting partner 3-related low similarity to SKP1 interacting partner 3 [Arabidopsis thaliana] GI:10716951 3 2 8 At1g11720 "starch synthase, putative strong similarity to soluble-starch-synthase [Solanum tuberosum] GI:1911166" 3 2 9 At1g11770 FAD-binding domain-containing protein similar to SP|P30986 reticuline oxidase precursor (Berberine-bridge-forming enzyme) (BBE) (Tetrahydroprotoberberine synthase) [Eschscholzia californica]; contains PF01565 FAD binding domain 3 2 10 At1g11910 "aspartyl protease family protein contains Pfam profiles: PF00026 eukaryotic aspartyl protease, PF03489 surfactant protein B, PF05184 saposin-like type B, region 1" 3 2 11 At1g11930 "alanine racemase family protein contains Pfam domain, PF01168: Alanine racemase, N-terminal domain" 3 2 12 At1g12090 protease inhibitor/seed storage/lipid transfer protein (LTP) family protein similar to 14 kDa polypeptide [Catharanthus roseus] GI:407410; contains Pfam protease inhibitor/seed storage/LTP family domain PF00234 3 2 13 At1g12150 expressed protein contains Pfam profile PF05701: Plant protein of unknown function (DUF827); expression supported by MPSS 3 2 14 At1g12330 expressed protein 3 2 15 At1g12370 type II CPD photolyase PHR1 (PHR1) nearly identical to type II CPD photolyase PHR1 [Arabidopsis thaliana] GI:2984707; similar to class II DNA photolyase (GI:5081541) [Chlamydomonas reinhardtii]; supporting cDNA gi|2984706|gb|AF053365.1|AF053365 3 2 16 At1g15140 oxidoreductase NAD-binding domain-containing protein Contains Pfam profile PF00175: Oxidoreductase NAD-binding domain; ESTs gb|H76345 and gb|AA651465 come from this gene 3 2 17 At1g15170 MATE efflux family protein similar to ripening regulated protein DDTFR18 [Lycopersicon esculentum] GI:12231296; contains Pfam profile PF01554: Uncharacterized membrane protein family 3 2 18 At1g15310 signal recognition particle 54 kDa protein 1 / SRP54 (SRP-54) (SRP-54A) identical to Swiss-Prot:P37106 signal recognition particle 54 kDa protein 1 (SRP54) [Arabidopsis thaliana] 3 2 19 At1g15350 expressed protein 3 2 20 At1g15480 "DNA-binding protein, putative similar to DNA-binding protein [Triticum aestivum] GI:6958202; contains Pfam profile PF01535: PPR repeat" 3 2 21 At1g15540 "oxidoreductase, 2OG-Fe(II) oxygenase family protein similar to GS-AOP loci [GI:16118889, GI:16118887, GI:16118891, GI:16118893]; contains PF03171 2OG-Fe(II) oxygenase superfamily domain" 3 2 22 At1g15740 leucine-rich repeat family protein 3 2 23 At1g15790 expressed protein 3 2 24 At1g18560 "hAT dimerisation domain-containing protein / BED zinc finger domain-containing protein / transposase-related weak similarity to Tam3-transposase [Antirrhinum majus] GI:16064; contains Pfam profiles PF02892: BED zinc finger, PF05699: hAT family dimerisation domain" 3 2 25 At1g18620 expressed protein 3 3 1 At1g18790 RWP-RK domain-containing protein contains Pfam profile: PF02042 RWP-RK domain 3 3 2 At1g18860 WRKY family transcription factor contains Pfam profile: PF03106 WRKY DNA -binding domain 3 3 3 At1g19010 expressed protein 3 3 4 At1g19060 hypothetical protein contains Pfam profile PF04776: Protein of unknown function (DUF626) 3 3 5 At1g19210 "AP2 domain-containing transcription factor, putative similar to AP2 domain transcription factor GI:4567204 from [Arabidopsis thaliana]" 3 3 6 At1g19270 "ubiquitin interaction motif-containing protein / LIM domain-containing protein weak similarity to LIM-homeobox protein [Mus musculus] GI:2149584, Hic-5 [Mus musculus] GI:664955; contains Pfam profiles PF02809: Ubiquitin interaction motif, PF00412: LIM domain" 3 3 7 At1g22170 phosphoglycerate/bisphosphoglycerate mutase family protein similar to SP|P31217 Phosphoglycerate mutase 1 (EC 5.4.2.1) {Escherichia coli O157:H7}; contains Pfam profile PF00300: phosphoglycerate mutase family 3 3 8 At1g22230 expressed protein ; expression supported by MPSS 3 3 9 At1g22335 expressed protein ; expression supported by MPSS 3 3 10 At1g22400 UDP-glucoronosyl/UDP-glucosyl transferase family protein contains Pfam profile: PF00201 UDP-glucoronosyl and UDP-glucosyl transferase 3 3 11 At1g22590 MADS-box family protein similar to putative DNA-binding protein GI:6714399 from [Arabidopsis thaliana]; MADS-box protein AGL87 3 3 12 At1g22640 myb family transcription factor (MYB4) similar to myb-related protein GI:1020155 from [Arabidopsis thaliana] 3 3 13 At1g22790 expressed protein identical to hypothetical protein GB:CAA72910 3 3 14 At1g22860 TGF beta receptor associated protein-related contains weak similarity to TGF beta receptor associated protein-1 [Homo sapiens] gi|3150052|gb|AAC16903 3 3 15 At1g26400 FAD-binding domain-containing protein similar to SP|P30986 reticuline oxidase precursor (Berberine-bridge-forming enzyme) (BBE) (Tetrahydroprotoberberine synthase) [Eschscholzia californica]; contains PF01565 FAD binding domain 3 3 16 At1g26460 pentatricopeptide (PPR) repeat-containing protein contains Pfam profile PF01535: PPR repeat 3 3 17 At1g26650 expressed protein 3 3 18 At1g26680 "transcriptional factor B3 family protein low similarity to reproductive meristem gene 1 from [Brassica oleracea var. botrytis] GI:3170424, [Arabidopsis thaliana] GI:13604227; contains Pfam profile PF02362: B3 DNA binding domain" 3 3 19 At1g26820 ribonuclease 3 (RNS3) identical to ribonuclease SP:P42815 Ribonuclease 3 precursor (EC 3.1.27.1) {Arabidopsis thaliana} 3 3 20 At1g26880 "60S ribosomal protein L34 (RPL34A) identical to GB:Q42351, location of EST 105E2T7, gb|T22624" 3 3 21 At1g27080 proton-dependent oligopeptide transport (POT) family protein similar to nitrate transporter NRT1-5 [Glycine max] GI:11933414; contains Pfam profile PF00854: POT family 3 3 22 At1g27140 "glutathione S-transferase, putative similar to glutathione S-transferase GB: AAF22517 GI:6652870 from [Papaver somniferum] GB:AY050343." 3 3 23 At1g29980 "expressed protein contains Pfam profile PF04862: Protein of unknown function, DUF642" 3 3 24 At1g30050 hypothetical protein 3 3 25 At1g30220 sugar transporter family protein similar to SP|Q96QE2 Proton myo-inositol co-transporter (Hmit) [Homo sapiens]; contains Pfam profile PF00083: major facilitator superfamily protein 3 4 1 At1g30280 expressed protein contains low similarity to cyclin G-associated kinase GI:1902912 SP|P97874 from [Rattus norvegicus] 3 4 2 At1g30490 homeobox-leucine zipper transcription factor (HB-9) identical to HD-Zip protein GB:CAA71854 GI:2145358 from [Arabidopsis thaliana] 3 4 3 At1g30515 expressed protein 3 4 4 At1g30690 "SEC14 cytosolic factor family protein / phosphoglyceride transfer family protein contains Pfam PF00650 : CRAL/TRIO domain; contains Pfam PF03765 : CRAL/TRIO, N-terminus; similar to cytosolic factor (Phosphatidylinositol/phosphatidylcholine transfer protein) (PI/PCTP) (SP:P24280) [Saccharomyces cerevisiae]; ESTs gb|T76582, gb|N06574 and gb|Z25700 come from this gene" 3 4 5 At1g30750 expressed protein 3 4 6 At1g33780 "expressed protein similar to At3g29240 [Arabidopsis thaliana]; contains Pfam profile PF02622: Uncharacterized ACR, COG1678" 3 4 7 At1g33830 avirulence-responsive family protein / avirulence induced gene (AIG1) family protein similar to AIG1 protein SP:P54120 (Arabidopsis thaliana); contains Pfam profile: PF00735 cell division protein (members of this family bind GTP) 3 4 8 At1g34000 light stress-responsive one-helix protein (OHP2) contains similarity to photosystem II 22 kDa protein GI:6006279 from [Arabidopsis thaliana] 3 4 9 At1g34050 "ankyrin repeat family protein contains ankyrin repeat domains, Pfam:PF00023" 3 4 10 At1g34245 expressed protein 3 4 11 At1g34310 transcriptional factor B3 family protein / auxin-responsive factor AUX/IAA-related contains Pfam profile: PF02309 AUX/IAA family 3 4 12 At1g34480 DC1 domain-containing protein contains Pfam protein PF03107 DC1 domain 3 4 13 At1g34550 expressed protein contains Pfam profile PF04765: Protein of unknown function (DUF616); expression supported by MPSS 3 4 14 At1g44780 expressed protein ; expression supported by MPSS 3 4 15 At1g44835 YbaK/prolyl-tRNA synthetase family protein contains Pfam PF04073: YbaK / prolyl-tRNA synthetases associated domain; similar to 25.7 kDa protein (GI:7271117) [Cicer arietinum] 3 4 16 At1g45050 ubiquitin-conjugating enzyme 15 (UBC15) E2; identical to ubiquitin-conjugating enzyme 15 GI:2801442 from [Arabidopsis thaliana] 3 4 17 At1g45145 thioredoxin H-type 5 (TRX-H-5) (TOUL) identical to SP|Q39241 Thioredoxin H-type 5 (TRX-H-5) {Arabidopsis thaliana}; identical to cDNA (TOUL) mRNA for thioredoxin GI:992965 3 4 18 At1g45474 "chlorophyll A-B binding protein, putative (LHCA5) identical to Lhca5 protein [Arabidopsis thaliana] GI:4741942; contains Pfam profile: PF00504 chlorophyll A-B binding protein; similar to light-harvesting complex protein GI:22752 from [Pinus sylvestris]" 3 4 19 At1g45976 expressed protein 3 4 20 At1g47240 "NRAMP metal ion transporter 2, putative (NRAMP2) similar to metal transporter Nramp3 [Arabidopsis thaliana] gi|6468012|gb|AAF13278; member of the natural resistance-associated macrophage protein (NRAMP) metal transporter family, PMID:11500563" 3 4 21 At1g47290 "3-beta hydroxysteroid dehydrogenase/isomerase family protein contains Pfam profile PF01073 3-beta hydroxysteroid dehydrogenase/isomerase domain; similar to NAD(P)-dependent steroid dehydrogenase from Homo sapiens [SP|Q15738], Mus musculus [SP|Q9R1J0]" 3 4 22 At1g50240 armadillo/beta-catenin repeat family protein contains Pfam profile: PF00514 armadillo/beta-catenin-like repeat 3 4 23 At1g50300 "zinc finger (Ran-binding) family protein / RNA recognition motif (RRM)-containing protein similar to SP|Q27294 RNA-binding protein cabeza {Drosophila melanogaster}; contains Pfam profiles: PF00076 RNA recognition motif (aka RRM, RBD, or RNP domain), PF00641: Zn-finger in Ran binding protein and others" 3 4 24 At1g50490 ubiquitin-conjugating enzyme 20 (UBC20) nearly identical to ubiquitin-conjugating enzyme UBC20 [Arabidopsis thaliana] GI:22530867; contains Pfam profile PF00179: Ubiquitin-conjugating enzyme 3 4 25 At1g50570 C2 domain-containing protein low similarity to cold-regulated gene SRC2 [Glycine max] GI:2055230; contains Pfam profile PF00168: C2 domain 3 5 1 At1g50740 expressed protein contains Pfam profile PF03647: Uncharacterised protein family (UPF0136) 3 5 2 At1g50800 hypothetical protein 3 5 3 At1g51010 expressed protein 3 5 4 At1g51080 expressed protein 3 5 5 At1g53710 calcineurin-like phosphoesterase family protein contains Pfam profile: PF00149 calcineurin-like phosphoesterase 3 5 6 At1g53780 "26S proteasome AAA-ATPase subunit, putative similar to 26S proteasome AAA-ATPase subunit RPT1 SP:Q41365 from [Spinacia oleracea]" 3 5 7 At1g53935 hypothetical protein 3 5 8 At1g54000 "myrosinase-associated protein, putative similar to myrosinase-associated proteins GI:1769968, GI:1769970, GI:1216391, GI:1216389 from [Brassica napus]; contains Pfam profile PF00657: GDSL-like Lipase/Acylhydrolase; contains 1 predicted transmembrane domain" 3 5 9 At1g54115 "cation exchanger, putative " 3 5 10 At1g54170 ataxin-2-related similar to SCA2 (GI:1770390) [Homo sapiens]; similar to ataxin-2 (GI:3005020) [Mus musculus] 3 5 11 At1g54310 expressed protein 3 5 12 At1g54370 "sodium proton exchanger, putative (NHX5) contains similarity to Na+/H+ antiporter GI:1655701 from [Xenopus laevis]; Member of The Monovalent Cation:Proton Antiporter (CPA1) Family, PMID:11500563; contains non-consensus AT-AC splice sites at introns 3 and 10" 3 5 13 At1g58030 amino acid permease family protein similar to SP|P18581 Low-affinity cationic amino acid transporter-2 (CAT-2) (T-cell early activation protein) {Mus musculus}; contains Pfam profile PF00324: Amino acid permease 3 5 14 At1g58100 "TCP family transcription factor, putative similar to auxin-induced basic helix-loop-helix transcription factor GI:5731257 from [Gossypium hirsutum]" 3 5 15 At1g58265 cytochrome P450-related 3 5 16 At1g58300 "heme oxygenase, putative similar to heme oxygenase 4 GI:14485565 from [Arabidopsis thaliana]" 3 5 17 At1g58480 "GDSL-motif lipase, putative similar to family II lipases EXL3 GI:15054386, EXL1 GI:15054382 from [Arabidopsis thaliana]; contains Pfam profile PF00657: GDSL-like Lipase/Acylhydrolase" 3 5 18 At1g58766 hypothetical protein 3 5 19 At1g59560 expressed protein contains similarity to apoptosis inhibitors 3 5 20 At1g59610 "dynamin-like protein, putative (ADL3) strong similarity to dynamin-like protein 6 (ADL6) [Arabidopsis thaliana] GI:6651399; contains Pfam profiles PF01031: Dynamin central region, PF00350: Dynamin family, PF02212: Dynamin GTPase effector domain, PF00169: PH domain; identical to cDNA dynamin-like protein ADL3, GI:4803835" 3 5 21 At1g62540 "flavin-containing monooxygenase family protein / FMO family protein similar to flavin-containing monooxygenase GB:AAA21178 GI:349534 from Oryctolagus cuniculus [SP|P32417], SP|P97501 from Mus musculus; contains Pfam profile PF00743 Flavin-binding monooxygenase-like" 3 5 22 At1g62610 short-chain dehydrogenase/reductase (SDR) family protein contains similarity to 3-oxoacyl-[acyl-carrier protein] reductase SP:P51831 from [Bacillus subtilis] 3 5 23 At1g62780 expressed protein 3 5 24 At1g62800 "aspartate aminotransferase, cytoplasmic isozyme 2 / transaminase A (ASP4) identical to aspartate aminotransferase, cytoplasmic isozyme 2 SP:P46646 [Arabidopsis thaliana]" 3 5 25 At1g62960 "1-aminocyclopropane-1-carboxylate synthase, putative / ACC synthase, putative similar to GI:1173638 [GB:U35779] from [Triticum aestivum] (Plant Mol. Biol. 31 (5), 1009-1020 (1996)), GI:1813331 from Vigna radiata" 3 6 1 At1g63010 SPX (SYG1/Pho81/XPR1) domain-containing protein contains Pfam profile PF03105: SPX domain 3 6 2 At1g63160 "replication factor C 40 kDa, putative similar to SWISS-PROT:Q9WUK4 activator 1 40 kDa subunit (Replication factor C 40 kDa subunit, A1 40 kDa subunit, RF-C 40 kDa subunit, RFC40) [Mus musculus]" 3 6 3 At1g63210 hypothetical protein contains Pfam profile: PF04283 protein of unknown function (DUF439) 3 6 4 At1g65960 glutamate decarboxylase 2 (GAD 2) similar to glutamate decarboxylase (gad) GI:294111 from [Petunia hybrida] 3 6 5 At1g66020 terpene synthase/cyclase family protein contains Pfam profile: PF01397: Terpene synthase family 3 6 6 At1g66160 U-box domain-containing protein similar to immediate-early fungal elicitor protein CMPG1 [Petroselinum crispum] GI:14582200; contains Pfam profile PF04564: U-box domain 3 6 7 At1g66220 subtilase family protein contains similarity to subtilase; SP1 GI:9957714 from [Oryza sativa]; contains Pfam profiles: PF00082 Subtilase family (3 copies) 3 6 8 At1g66380 myb family transcription factor (MYB114) similar to myb-related protein An2 GI:7673090 from [Petunia x hybrida] 3 6 9 At1g66440 DC1 domain-containing protein contains Pfam protein PF03107 DC1 domain 3 6 10 At1g66600 WRKY family transcription factor contains Pfam profile: PF03106 WRKY DNA -binding domain 3 6 11 At1g66660 "seven in absentia (SINA) protein, putative similar to SIAH2 protein [Brassica napus var. napus] GI:7657878; contains Pfam profile PF03145: Seven in absentia protein family" 3 6 12 At1g69325 "remorin family protein contains Pfam domain, PF03763: Remorin, C-terminal region" 3 6 13 At1g69380 expressed protein predicated by genscan+ 3 6 14 At1g69510 expressed protein 3 6 15 At1g69540 MADS-box family protein contains Pfam profile: PF00319: SRF-type transcription factor (DNA-binding and dimerisation domain) 3 6 16 At1g69720 heme oxygenase 3 (HO3) similar to heme oxygenase 3 [Arabidopsis thaliana] gi|14485563|gb|AAK63006 3 6 17 At1g69780 homeobox-leucine zipper protein 13 (HB-13) / HD-ZIP transcription factor 13 identical to homeobox gene 13 protein (GP:12325190) [Arabidopsis thaliana] 3 6 18 At1g69960 serine/threonine protein phosphatase PP2A-5 catalytic subunit (PP2A5) identical to SP|O04951|P2A5_ARATH Serine/threonine protein phosphatase PP2A-5 catalytic subunit (EC 3.1.3.16) {Arabidopsis thaliana}; contains Pfam profile PF00149: Ser/Thr protein phosphatase 3 6 19 At1g70030 paired amphipathic helix repeat-containing protein similar to Sin3 protein [Yarrowia lipolytica] GI:18076824; contains Pfam profile PF02671: Paired amphipathic helix repeat 3 6 20 At1g72830 CCAAT-binding transcription factor (CBF-B/NF-YA) family protein contains Pfam profile: PF02045 CCAAT-binding transcription factor (CBF-B/NF-YA) subunit B 3 6 21 At1g72870 "disease resistance protein (TIR-NBS class), putative domain signature TIR-NBS exists, suggestive of a disease resistance protein." 3 6 22 At1g73050 "(R)-mandelonitrile lyase, putative / (R)-oxynitrilase, putative similar to mandelonitrile lyase from Prunus serotina [SP|P52706, SP|52707]; contains Pfam protile PF00732 GMC oxidoreductase" 3 6 23 At1g73120 expressed protein 3 6 24 At1g73260 trypsin and protease inhibitor family protein / Kunitz family protein similar to trypsin inhibitor propeptide [Brassica oleracea] GI:841208; contains Pfam profile PF00197: Trypsin and protease inhibitor 3 6 25 At1g73320 expressed protein 3 7 1 At1g73480 "hydrolase, alpha/beta fold family protein low similarity to monoglyceride lipase from [Homo sapiens] GI:14594904, [Mus musculus] GI:2632162; contains Pfam profile PF00561: hydrolase, alpha/beta fold family" 3 7 2 At1g73550 protease inhibitor/seed storage/lipid transfer protein (LTP) family protein contains Pfam protease inhibitor/seed storage/LTP family domain PF00234 3 7 3 AT5G57480 PC-1 3 7 4 3XSSC PC-1 3 7 5 AT1G29930 PC-1 3 7 6 3XSSC PC-1 3 7 7 AT3G44150 PC-1 3 7 8 3XSSC PC-1 3 7 9 AT4G00810 PC-1 3 7 10 3XSSC PC-1 3 7 11 At1g76380 "DNA-binding bromodomain-containing protein contains bromodomain, INTERPRO:IPR001487" 3 7 12 At1g76410 "zinc finger (C3HC4-type RING finger) family protein contains Pfam domain, PF00097: Zinc finger, C3HC4 type (RING finger)" 3 7 13 At1g76550 "pyrophosphate--fructose-6-phosphate 1-phosphotransferase alpha subunit, putative / pyrophosphate-dependent 6-phosphofructose-1-kinase, putative strong similarity to SP|Q41140 Pyrophosphate--fructose 6-phosphate 1-phosphotransferase alpha subunit (EC 2.7.1.90) (PFP) (PPI-PFK) {Ricinus communis}; contains Pfam profile PF00365: Phosphofructokinase" 3 7 14 At1g76610 "hypothetical protein contains Pfam profile PF04759: Protein of unknown function, DUF617" 3 7 15 At1g76780 expressed protein ; expression supported by MPSS 3 7 16 At1g76830 F-box family protein contains F-box domain Pfam:PF00646 3 7 17 At1g76960 expressed protein 3 7 18 At1g77000 F-box family protein similar to GP|21554029| F-box protein AtFBL5 from [Arabidopsis thaliana]; similar to F-box protein FBL2 GI:6063090 from [Homo sapiens] 3 7 19 At1g79650 "DNA repair protein RAD23, putative similar to DNA repair by nucleotide excision (NER) RAD23 protein, isoform II GI:1914685 from [Daucus carota]; contains Pfam profiles PF00240: Ubiquitin family, PF00627: UBA/TS-N domain" 3 7 20 At1g79690 MutT/nudix family protein contains Pfam NUDIX domain [PF00293]; very low similarity to Chain A and Chain B of Escherichia coli isopentenyl diphosphate:dimethylallyl diphosphate isomerase [gi:15826361] [gi:15826360] 3 7 21 At1g79830 expressed protein weak similarity to TATA element modulatory factor (TMF) (Swiss-Prot:P82094) [Homo sapiens] 3 7 22 At1g79880 La domain-containing protein contains Pfam profile PF05383: La domain; similar to putative protein GB:CAA18589 [Arabidopsis thaliana] 3 7 23 At1g80000 expressed protein identical to unknown protein GB:AAD55481 [Arabidopsis thaliana] 3 7 24 At1g80050 adenine phosphoribosyltransferase 2 (APT2) identical to SP|Q42563 Adenine phosphoribosyltransferase 2 (EC 2.4.2.7) (APRT) {Arabidopsis thaliana} 3 7 25 At1g80230 "cytochrome c oxidase family protein contains Pfam domain, PF01215: Cytochrome c oxidase subunit Vb" 3 8 1 At1g80270 "DNA-binding protein, putative similar to DNA-binding protein [Triticum aestivum] GI:6958202; contains Pfam profile: PF01535 PPR repeat" 3 8 2 At2g03140 CAAX amino terminal protease family protein very low similarity to SP|Q40863 Late embryogenesis abundant protein EMB8 from Picea glauca; contains Pfam profile PF02517 CAAX amino terminal protease family protein 3 8 3 At2g03200 "aspartyl protease family protein contains Pfam domain, PF00026: eukaryotic aspartyl protease" 3 8 4 At2g03380 pentatricopeptide (PPR) repeat-containing protein contains INTERPRO:IPR002885 PPR repeats 3 8 5 At2g03450 purple acid phosphatase (PAP9) identical to purple acid phosphatase [Arabidopsis thaliana] GI:20257481; contains Pfam profile: PF00149 calcineurin-like phosphoesterase; contains metallo-phosphoesterase motif (PS50185) 3 8 6 At2g03620 "magnesium transporter CorA-like family protein (MRS2-5) weak similarity to SP|Q01926 RNA splicing protein MRS2, mitochondrial precursor {Saccharomyces cerevisiae}; contains Pfam profile PF01544: CorA-like Mg2+ transporter protein; supporting cDNA gi|25360881|gb|AY150290.1|" 3 8 7 At2g03710 MADS-box protein (AGL3) 3 8 8 At2g03870 "small nuclear ribonucleoprotein, putative / snRNP, putative / Sm protein, putative similar to U6 snRNA-associated Sm-like protein LSm7 [Homo sapiens] SWISS-PROT:Q9UK45" 3 8 9 At2g03930 hypothetical protein 3 8 10 At2g07727 "cytochrome b (MTCYB) (COB) (CYTB) contains Pfam profile PF00033: Cytochrome b(N-terminal)/b6/petB; ontains Pfam profile PF00032: Cytochrome b(C-terminal)/b6/petD; 99% identical to apocytochrome B (GI:6851014), cytochrome b (GI:402962), and Cytochrome b (Swiss-Prot:P42792) [Arabidopsis thaliana]" 3 8 11 At2g07739 expressed protein 3 8 12 At2g09990 40S ribosomal protein S16 (RPS16A) Same as GB:Q42340 3 8 13 At2g10090 hypothetical protein 3 8 14 At2g10555 replication protein-related weak similarity to Replication Protein A 70 kDa DNA-binding subunit (RP-A) (RF-A) (Replication factor-A protein 1) (Single-stranded DNA-binding protein) (DMRPA1) (GI:2498844)(SP:Q24492) [Drosophila melanogaster] 3 8 15 At2g10870 hypothetical protein 3 8 16 At2g11345 "hypothetical protein similar to At3g42690, At4g04130" 3 8 17 At2g11520 "protein kinase family protein contains protein kinase domain, Pfam:PF00069" 3 8 18 At2g16380 "SEC14 cytosolic factor family protein / phosphoglyceride transfer family protein contains Pfam PF00650 : CRAL/TRIO domain; contains Pfam PF03765 : CRAL/TRIO, N-terminus; similar to phosphatidylinositol transfer-like protein III (GI:14486705) [Lotus japonicus]" 3 8 19 At2g16430 purple acid phosphatase (PAP10) identical to purple acid phosphatase (PAP10) GI:20257482 from [Arabidopsis thaliana] 3 8 20 At2g16587 expressed protein 3 8 21 At2g16650 expressed protein 3 8 22 At2g16860 GCIP-interacting family protein similar to GCIP-interacting protein mp29 (GI:27372623) [Mus musculus]; similar to GCIP-interacting protein P29 (GI:11967379) [Homo sapiens] 3 8 23 At2g16900 expressed protein 3 8 24 At2g17036 F-box family protein ; similar to SKP1 interacting partner 2 (SKIP2) TIGR_Ath1:At5g67250 3 8 25 At2g17080 hypothetical protein contains Pfam profile PF03087: Arabidopsis protein of unknown function 3 9 1 At2g19930 "RNA-dependent RNA polymerase family protein contains Pfam domain, PF05183: RNA dependent RNA polymerase" 3 9 2 At2g19970 "pathogenesis-related protein, putative similar to pathogenesis-related protein 1 {Arabidopsis thaliana} GI:166805; contains Pfam profile PF00188: SCP-like extracellular protein" 3 9 3 At2g20140 "26S protease regulatory complex subunit 4, putative similar to Swiss-Prot:P48601 26S protease regulatory subunit 4 (P26S4) [Drosophila melanogaster]" 3 9 4 At2g20180 "basic helix-loop-helix (bHLH) family protein contains Pfam domain, PF00010: Helix-loop-helix DNA-binding domain" 3 9 5 At2g20380 kelch repeat-containing F-box family protein contains F-box domain Pfam:PF00646 and Kelch motif Pfam:PF01344 3 9 6 At2g20440 RabGAP/TBC domain-containing protein similar to SP|P09379 GTPase-activating protein GYP7 (Fragment) {Yarrowia lipolytica}; contains Pfam profile PF00566: TBC domain 3 9 7 At2g20585 expressed protein 3 9 8 At2g20610 "aminotransferase, putative similar to nicotianamine aminotransferase from Hordeum vulgare [GI:6498122, GI:6469087]; contains Pfam profile PF00155 aminotransferase, classes I and II" 3 9 9 At2g23260 UDP-glucoronosyl/UDP-glucosyl transferase family protein contains Pfam profile: PF00201 UDP-glucoronosyl and UDP-glucosyl transferase 3 9 10 At2g23320 WRKY family transcription factor identical to WRKY DNA-binding protein 15 GI:13506742 from [Arabidopsis thaliana] 3 9 11 At2g23520 expressed protein ; expression supported by MPSS 3 9 12 At2g23560 "hydrolase, alpha/beta fold family protein similar to ethylene-induced esterase [Citrus sinensis] GI:14279437, polyneuridine aldehyde esterase [Rauvolfia serpentina] GI:6651393; contains Pfam profile PF00561: hydrolase, alpha/beta fold family" 3 9 13 At2g23755 expressed protein 3 9 14 At2g23810 senescence-associated family protein similar to senescence-associated protein 5 [Hemerocallis hybrid cultivar] gi|3551954|gb|AAC34855 3 9 15 At2g23990 plastocyanin-like domain-containing protein 3 9 16 At2g24030 expressed protein and genefinder 3 9 17 At2g26870 phosphoesterase family protein low similarity to SP|Q9RGS8 Non-hemolytic phospholipase C precursor (EC 3.1.4.3) (Phosphatidylcholine cholinephosphohydrolase) {Burkholderia pseudomallei}; contains Pfam profile PF04185: Phosphoesterase family 3 9 18 At2g26930 "4-diphosphocytidyl-2-C-methyl-D-erythritol kinase (CMK) (CDPMEK) identical to 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase, chloroplast precursor (CMK) (4-(cytidine-5'-diphospho)-2-C-methyl- D-erythritol kinase)(CDPMEK) [Arabidopsis thaliana] SWISS-PROT:O81014" 3 9 19 At2g27060 "leucine-rich repeat transmembrane protein kinase, putative " 3 9 20 At2g27100 C2H2 zinc-finger protein SERRATE (SE) identical to C2H2 zinc-finger protein SERRATE GI:14486602 from [Arabidopsis thaliana] 3 9 21 At2g27260 expressed protein 3 9 22 At2g27310 F-box family protein contains Pfam PF00646: F-box domain;; similar to SKP1 interacting partner 2 (SKIP2) TIGR_Ath1:At5g67250 3 9 23 At2g27450 "carbon-nitrogen hydrolase family protein low similarity to beta-alanine synthase [Drosophila melanogaster] GI:14334063; contains Pfam profile PF00795: hydrolase, carbon-nitrogen family" 3 9 24 At2g27490 dephospho-CoA kinase family similar to Dephospho-CoA kinase (EC 2.7.1.24) (Dephosphocoenzyme A kinase). (Swiss-Prot:Q92BF2) [Listeria innocua]; contains Pfam profile PF01121: Dephospho-CoA kinase 3 9 25 At2g30250 WRKY family transcription factor 3 10 1 At2g30310 "GDSL-motif lipase/hydrolase family protein similar to family II lipases EXL3 GI:15054386, EXL1 GI:15054382 from [Arabidopsis thaliana]; contains Pfam profile PF00657: GDSL-like Lipase/Acylhydrolase" 3 10 2 At2g30470 transcriptional factor B3 family protein low similarity to FUSCA3 [Arabidopsis thaliana] GI:3582518; contains Pfam profile PF02362: B3 DNA binding domain 3 10 3 At2g30505 Expressed protein 3 10 4 At2g30650 "3-hydroxyisobutyryl-coenzyme A hydrolase, putative / CoA-thioester hydrolase, putative strong similarity to gi:8572760; contains Pfam profile PF00388 enoyl-CoA hydratase/isomerase family protein" 3 10 5 At2g30695 expressed protein 3 10 6 At2g30870 "glutathione S-transferase, putative supported by cDNA GI:443698 GB:D17673" 3 10 7 At2g30930 expressed protein 3 10 8 At2g33500 zinc finger (B-box type) family protein 3 10 9 At2g33550 gt-2-related weak similarity to gt-2 (GI:20249) [Oryza sativa] 3 10 10 At2g33720 expressed protein 3 10 11 At2g33750 "purine permease, putative (PUP2) similar to purine permease [Arabidopsis thaliana] GI:7620007; contains Pfam profiles PF03151: Domain of unknown function, DUF250, PF00892: Integral membrane protein; identical to cDNA putative purine permease (PUP2) mRNA, partial cds GI:14388590" 3 10 12 At2g33845 DNA-binding protein-related contains weak similarity to G-quartet DNA binding protein 3 [Tetrahymena thermophila] gi|4583503|gb|AAD25098 3 10 13 At2g33980 MutT/nudix family protein similar to coenzyme A diphosphatase [Mus musculus] GI:12746410; contains Pfam profile PF00293: NUDIX domain 3 10 14 At2g34120 hypothetical protein 3 10 15 At2g34190 xanthine/uracil permease family protein contains Pfam profile: PF00860 permease family 3 10 16 At2g36780 UDP-glucoronosyl/UDP-glucosyl transferase family protein contains Pfam profile: PF00201 UDP-glucoronosyl and UDP-glucosyl transferase 3 10 17 At2g36835 expressed protein 3 10 18 At2g36980 pentatricopeptide (PPR) repeat-containing protein contains INTERPRO:IPR002885 PPR repeats 3 10 19 At2g37025 pathogen-responsive DNA-binding protein-related contains weak similarity to BPF-1 (GI:441310) [Petroselinum crispum] 3 10 20 At2g37150 "zinc finger (C3HC4-type RING finger) family protein contains Pfam profile: PF00097 zinc finger, C3HC4 type (RING finger)" 3 10 21 At2g37200 "integral membrane protein, putative contains 4 transmembrane domains; contains Pfam PF04535 : Domain of unknown function (DUF588); similar to putative ethylene responsive element binding protein (GI:22135858) [Arabidopsis thaliana]" 3 10 22 At2g37370 hypothetical protein 3 10 23 At2g37420 kinesin motor protein-related 3 10 24 At2g40020 expressed protein 3 10 25 At2g40070 expressed protein 3 11 1 At2g40170 Em-like protein GEA6 (EM6) identical toSP|Q02973 Em-like protein GEA6 {Arabidopsis thaliana}; contains Pfam profile PF00477: Small hydrophilic plant seed protein 3 11 2 At2g40220 abscisic acid-insensitive 4 (ABI4) identical to AP2 domain transcription factor ABI4 GI:4587996 from [Arabidopsis thaliana]; sucrose uncoupled-6 (sun6) mutation PMID: 10972884 3 11 3 At2g40390 expressed protein 3 11 4 At2g40420 amino acid transporter family protein similar to neuronal glutamine transporter [Rattus norvegicus] GI:6978016; contains Pfam profile PF01490: Transmembrane amino acid transporter protein 3 11 5 At2g40580 "protein kinase family protein contains protein kinase domain, Pfam:PF00069" 3 11 6 At2g40640 expressed protein 3 11 7 At2g43180 expressed protein 3 11 8 At2g43220 DC1 domain-containing protein contains Pfam profile PF03107: DC1 domain 3 11 9 At2g43410 RNA recognition motif (RRM)-containing protein contains InterPro entry IPR000504: RNA-binding region RNP-1 (RNA recognition motif) (RRM) 3 11 10 At2g43460 60S ribosomal protein L38 (RPL38A) 3 11 11 At2g43630 expressed protein 3 11 12 At2g43670 "glycosyl hydrolase family protein 17 similar to glucan endo-1,3-beta-glucosidase precursor SP:P52409 from [Triticum aestivum]; C terminal homology only" 3 11 13 At2g43840 UDP-glucoronosyl/UDP-glucosyl transferase family protein contains Pfam profile: PF00201 UDP-glucoronosyl and UDP-glucosyl transferase 3 11 14 At2g43890 "polygalacturonase, putative / pectinase, putative similar to SP|P48979 Polygalacturonase precursor (EC 3.2.1.15) (PG) (Pectinase) {Prunus persica}; contains Pfam profile PF00295: Glycosyl hydrolases family 28 (polygalacturonases)" 3 11 15 At2g46510 basic helix-loop-helix (bHLH) family protein contains Pfam profile: PF00010 helix-loop-helix DNA-binding domain 3 11 16 At2g46560 "transducin family protein / WD-40 repeat family protein similar to CPY (GI:3096961) {Chironomus thummi}; contains Pfam PF00400: WD domain, G-beta repeat (8 copies, 3 weak)|9780477|gb|BE522499.1|BE522499" 3 11 17 At2g46735 expressed protein 3 11 18 At2g46790 "pseudo-response regulator 9 (APRR9) / timing of CAB expression 1-like protein (TL1) identical to pseudo-response regulator 9 GI:10281000 from [Arabidopsis thaliana], timing of CAB expression 1-like protein [Arabidopsis thaliana] GI:9247022; contains Pfam profile PF00072: Response regulator receiver domain; identical to cDNA timing of CAB expression 1-like protein GI:9247021" 3 11 19 At2g46915 expressed protein and genscan 3 11 20 At2g46970 "basic helix-loop-helix (bHLH) protein, putative similar to PIF3 like basic Helix Loop Helix protein (PIL1) [Arabidopsis thaliana] GI:22535492; contains Myc-type, 'helix-loop-helix' dimerization domain signature, PROSITE:PS00038" 3 11 21 At2g47130 short-chain dehydrogenase/reductase (SDR) family protein similar to 3-beta-hydroxysteroiddehydrogenase GI:15983819 from [Digitalis lanata] 3 11 22 At2g47190 myb family transcription factor (MYB2) contains Pfam profile: PF00249 myb-like DNA-binding domain 3 11 23 At3g02500 expressed protein 3 11 24 At3g02540 "ubiquitin family protein contains Pfam profiles PF00240: Ubiquitin family, PF00627: UBA/TS-N domain;" 3 11 25 At3g02690 integral membrane family protein similar to PecM protein (GI:5852331) {Vogesella indigofera} and PecM protein (SP:P42194) [Erwinia chrysanthemi] 3 12 1 At3g02750 protein phosphatase 2C family protein / PP2C family protein similar to protein phosphatase-2C; PP2C (GI:3643088) [Mesembryanthemum crystallinum]; contains Pfam PF00481 : Protein phosphatase 2C domain; 3 12 2 At3g02900 expressed protein 3 12 3 At3g02960 copper-binding protein-related low similarity to copper homeostasis factor gi:3168840 from Arabidopsis thaliana; contains Pfam profile PF00403: Heavy-metal-associated domain 3 12 4 At3g03140 expressed protein 3 12 5 At3g03200 no apical meristem (NAM) family protein similar to NAC2 (GI:6456751) {Arabidopsis thaliana} 3 12 6 At3g05750 expressed protein 3 12 7 At3g05810 expressed protein 3 12 8 At3g05970 "long-chain-fatty-acid--CoA ligase / long-chain acyl-CoA synthetase (LACS6) strong similarity to AMP-binding protein (MF39P) gi:1617274 from Brassica napus, similar to putative long-chain-fatty-acid--CoA ligase (brain isozyme) GB:P33124 [Rattus norvegicus]; contains Pfam AMP-binding enzyme domain PF00501; identical to cDNA AtLACS6 for long-chain acyl-CoA synthetase GI:22531705" 3 12 9 At3g06020 expressed protein ; expression supported by MPSS 3 12 10 At3g06140 "zinc finger (C3HC4-type RING finger) family protein contains Pfam profile: PF00097 Zinc finger, C3HC4 type (RING finger)" 3 12 11 At3g06190 speckle-type POZ protein-related similar to SPOP (novel nuclear speckle-type protein) (SP:O43791) [Homo sapiens]; contains Pfam PF00651 : BTB/POZ domain; contains Pfam PF00917: MATH domain 3 12 12 At3g06360 arabinogalactan-protein (AGP27) 3 12 13 At3g06420 "autophagy 8h (APG8h) identical to autophagy 8h [Arabidopsis thaliana] GI:19912165; contains Pfam profile PF02991: Microtubule associated protein 1A/1B, light chain 3; supporting cDNA gi|19912164|dbj|AB073182.1|" 3 12 14 At3g09350 armadillo/beta-catenin repeat family protein contains Pfam profile: PF00514 armadillo/beta-catenin-like repeat 3 12 15 At3g09410 pectinacetylesterase family protein similar to pectinacetylesterase precursor GB:CAA67728 [Vigna radiata]; contains Pfam profile: PF03283 pectinacetylesterase 3 12 16 At3g09580 "amine oxidase family protein low similarity to SP|P28553 Phytoene dehydrogenase, chloroplast precursor (Phytoene desaturase) from Glycine max; contains Pfam profile PF01593 amine oxidase, flavin-containing" 3 12 17 At3g09650 pentatricopeptide (PPR) repeat-containing protein contains Pfam profile PF01535: PPR repeat 3 12 18 At3g09800 clathrin adaptor complex small chain family protein contains Pfam profile: PF01217 clathrin adaptor complex small chain 3 12 19 At3g09840 cell division cycle protein 48 (CDC48A) (CDC48) identical to SP|P54609 Cell division cycle protein 48 homolog {Arabidopsis thaliana} 3 12 20 At3g10000 DNA-binding protein-related similar to GT-2 factor [Arabidopsis thaliana GI:416490 3 12 21 At3g10060 "immunophilin, putative / FKBP-type peptidyl-prolyl cis-trans isomerase, putative Pfam:PF-254: FKBP-type peptidyl-prolyl cis-trans isomerases" 3 12 22 At3g12440 extensin family protein contains similarity to Swiss-Prot:Q38913 extensin 1 precursor (AtExt1) (AtExt4) [Arabidopsis thaliana] 3 12 23 At3g12500 basic endochitinase identical to basic endochitinase precursor SP:P19171 from [Arabidopsis thaliana] 3 12 24 At3g12670 "CTP synthase, putative / UTP--ammonia ligase, putative similar to SP|P17812 CTP synthase (EC 6.3.4.2) (UTP--ammonia ligase) {Homo sapiens}; contains Pfam profile PF00117: glutamine amidotransferase class-I" 3 12 25 At3g12710 "methyladenine glycosylase family protein similar to SP|P05100 DNA-3-methyladenine glycosylase I (EC 3.2.2.20) (3-methyladenine-DNA glycosylase I, constitutive) {Escherichia coli}; contains Pfam profile PF03352: Methyladenine glycosylase" 3 13 1 At3g12890 expressed protein 3 13 2 At3g12950 expressed protein 3 13 3 At3g13065 "leucine-rich repeat transmembrane protein kinase, putative leucine-rich repeat transmembrane protein kinase 1 GB:AAC27894 from [Zea mays]" 3 13 4 At3g13100 ABC transporter family protein similar to ATP-binding cassette transporter MRP8 GI:18031899 from [Arabidopsis thaliana]; contains Pfam profile: PF00005 ABC transporter 3 13 5 At3g15440 expressed protein 3 13 6 At3g15500 no apical meristem (NAM) family protein (NAC3) identical to AtNAC3 [Arabidopsis thaliana] GI:12060424; contains Pfam PF02365: No apical meristem (NAM) domain; similar to jasmonic acid 2 GB:AAF04915 from [Lycopersicon esculentum] 3 13 7 At3g15660 glutaredoxin family protein contains Pfam profile PF00462: Glutaredoxin 3 13 8 At3g15700 "disease resistance protein, putative similar to NBS/LRR disease resistance protein [Arabidopsis thaliana] gi|3309619|gb|AAC26125; contains Pfam profile: PF00931 NB-ARC domain" 3 13 9 At3g15880 "WD-40 repeat family protein contains Pfam profile: PF00400 WD domain, G-beta repeat (7 copies)" 3 13 10 At3g15920 phox (PX) domain-containing protein weak similarity to myosin heavy chain [Rana catesbeiana] GI:4249699; contains Pfam profile PF00787: PX domain 3 13 11 At3g16080 60S ribosomal protein L37 (RPL37C) similar to ribosomal protein L37 GB:BAA04888 from [Homo sapiens] 3 13 12 At3g16140 "photosystem I reaction center subunit VI, chloroplast, putative / PSI-H, putative (PSAH1) identical to SP|Q9SUI7; similar to PSI-H precursor [Nicotiana sylvestris] GI:407353; contains Pfam profile PF03244: Photosystem I reaction centre subunit VI" 3 13 13 At3g18780 actin 2 (ACT2) identical to SP|Q96292 Actin 2 {Arabidopsis thaliana}; nearly identical to SP|Q96293 Actin 8 [Arabidopsis thaliana] GI:1669387 and to At1g49240 3 13 14 At3g18830 "mannitol transporter, putative similar to mannitol transporter [Apium graveolens var. dulce] GI:12004316; contains Pfam profile PF00083: major facilitator superfamily protein" 3 13 15 At3g18980 F-box family protein contains Pfam:PF00646 F-box domain ; contains TIGRFAM TIGR01640: F-box protein interaction domain ; contains TIGRFAM TIGR01640: F-box protein interaction domain 3 13 16 At3g19030 expressed protein contains similarity to phosphoserine aminotransferase GB:P19689 from [Yersinia enterocolitica] 3 13 17 At3g19190 expressed protein 3 13 18 At3g19250 hypothetical protein 3 13 19 At3g19410 F-box family protein contains Pfam PF00646: F-box domain; contains TIGRFAM TIGR01640: F-box protein interaction domain; similar to hypothetical protein GB:AAC69119 from [Arabidopsis thaliana] 3 13 20 At3g19470 F-box family protein contains F-box domain Pfam:PF00646 3 13 21 At3g22190 calmodulin-binding family protein contains Pfam profile PF00612: IQ calmodulin-binding motif 3 13 22 At3g22235 expressed protein 3 13 23 At3g22415 expressed protein 3 13 24 At3g22425 imidazoleglycerol-phosphate dehydratase 1 (IGPD1) identical to SP|P34047 Imidazoleglycerol-phosphate dehydratase 1 (EC 4.2.1.19) (IGPD 1) {Arabidopsis thaliana}; supporting cDNA gi|437212|gb|U02689.1|ATU02689 3 13 25 At3g22560 GCN5-related N-acetyltransferase (GNAT) family protein contains Pfam profile:PF00583 Acetyltransf:Acetyltransferase (GNAT) family 3 14 1 At3g22630 "20S proteasome beta subunit D (PBD1) (PRGB) identical to GB:CAA74026 from [Arabidopsis thaliana] ( FEBS Lett. (1997) 416 (3), 281-285); identical to cDNA proteasome subunit prgb GI:2511589" 3 14 2 At3g22810 expressed protein ; expression supported by MPSS 3 14 3 At3g22860 "eukaryotic translation initiation factor 3 subunit 8, putative / eIF3c, putative similar to eukaryotic translation initiation factor 3 subunit 8 (eIF3 p110) [Arabidopsis thaliana] SWISS-PROT:O49160" 3 14 4 At3g25760 early-responsive to dehydration stress protein (ERD12) nearly identical to early-responsive to dehydration (ERD12) protein [GI:15320414]; similar to allene oxide cyclase GI:8977961 from [Lycopersicon esculentum]; identical to cDNA ERD12 partial cds GI:15320413 3 14 5 At3g25810 "myrcene/ocimene synthase, putative similar to GI:9957293; contains Pfam profile: PF01397 terpene synthase family" 3 14 6 At3g25940 transcription factor S-II (TFIIS) domain-containing protein similar to SP|O94703 DNA-directed RNA polymerase I 13.1 kDa polypeptide (EC 2.7.7.6) {Schizosaccharomyces pombe}; contains Pfam profile PF01096: Transcription factor S-II (TFIIS) 3 14 7 At3g26000 F-box family protein contains Pfam PF00646: F-box domain; similar to SKP1 interacting partner 2 (SKIP2) TIGR_Ath1:At5g67250 3 14 8 At3g26130 glycosyl hydrolase family 5 protein / cellulase family protein contains Pfam profile: PF00150 cellulase (glycosyl hydrolase family 5) 3 14 9 At3g26180 "cytochrome P450 71B20, putative (CYP71B2) identical to cytochrome P450 71B20 (SP:Q9LTM3) [Arabidopsis thaliana]; similar to cytochrome P450 GB:O65784 [Arabidopsis thaliana]" 3 14 10 At3g26350 expressed protein ; expression supported by MPSS 3 14 11 At3g26410 expressed protein 3 14 12 At3g29100 vesicle transport v-SNARE 13 (VTI13) / vesicle soluble NSF attachment protein receptor 13 identical to identical to Vesicle transport v-SNARE 13 (SP:Q9LVP9) {Arabidopsis thaliana}; similar to v-snare AtVTI1a (GI:6690274) (GB:AAF24061) [Arabidopsis thaliana] 3 14 13 At3g29160 Snf1-related protein kinase (KIN11) identical to protein kinase AKin11 GI:1729444 from [Arabidopsis thaliana] 3 14 14 At3g29270 expressed protein 3 14 15 At3g29320 "glucan phosphorylase, putative similar to alpha-glucan phosphorylase, L isozyme 1 precursor GB:P04045 from [Solanum tuberosum] (J. Biochem. 106 (4), 691-695 (1989))" 3 14 16 At3g29560 hypothetical protein 3 14 17 At3g29610 hypothetical protein 3 14 18 At3g29785 hypothetical protein 3 14 19 At3g29796 hypothetical protein 3 14 20 At3g43900 "hypothetical protein predicted protein, Arabidopsis thaliana" 3 14 21 At3g43960 "cysteine proteinase, putative contains similarity to cysteine proteinase RD21A (thiol protease) GI:435619, SP:P43297 from [Arabidopsis thaliana]" 3 14 22 At3g44130 F-box family protein contains F-box domain Pfam:PF00646 3 14 23 At3g44190 pyridine nucleotide-disulphide oxidoreductase family protein low similarity to dihydrolipoamide dehydrogenase from Clostridium magnum [GI:472330]; contains Pfam profile PF00070 Pyridine nucleotide-disulphide oxidoreductase domain 3 14 24 At3g44370 expressed protein weak similarity to AtOXA1 [Arabidopsis thaliana] GI:6624207 3 14 25 At3g44460 basic leucine zipper transcription factor (BZIP67) identical to basic leucine zipper transcription factor GI:18656053 from [Arabidopsis thaliana]; identical to cDNA basic leucine zipper transcription factor (atbzip67 gene) GI:18656052 3 15 1 At3g44620 low molecular weight phosphotyrosine protein phosphatase family protein contains Pfam profile: PF01451 low molecular weight phosphotyrosine protein phosphatase 3 15 2 At3g44690 expressed protein 3 15 3 At3g47530 pentatricopeptide (PPR) repeat-containing protein contains Pfam profile PF01535: PPR repeat 3 15 4 At3g47570 "leucine-rich repeat transmembrane protein kinase, putative protein kinase Xa21 - Oryza sativa, PIR:A57676" 3 15 5 At3g47740 "ABC transporter family protein ATP binding cassette transporter ABC1, Homo sapiens, PIR2:A54774" 3 15 6 At3g47800 aldose 1-epimerase family protein similar to ALDOSE 1-EPIMERASE PRECURSOR GB:P05149 [SP|P05149] from [Acinetobacter calcoaceticus]; contains Pfam profile PF01263 Aldose 1-epimerase 3 15 7 At3g47960 proton-dependent oligopeptide transport (POT) family protein contains Pfam profile: PF00854 POT family 3 15 8 At3g48020 expressed protein 3 15 9 At3g48170 "betaine-aldehyde dehydrogenase, putative similar to betaine-aldehyde dehydrogenase, chloroplast precursor (BADH) [Arabidopsis thaliana] SWISS-PROT:Q9S795" 3 15 10 At3g48210 expressed protein 3 15 11 At3g51100 expressed protein 3 15 12 At3g51160 "GDP-D-mannose-4,6-dehydratase (MUR1) almost identical to GDP-D-mannose-4,6-dehydratase (MUR1) GI:1764100 from [Arabidopsis thaliana]" 3 15 13 At3g51340 "aspartyl protease family protein contains Eukaryotic and viral aspartyl proteases active site, PROSITE:PS00141" 3 15 14 At3g51390 zinc finger (DHHC type) family protein contains Pfam profile PF01529: DHHC zinc finger domain 3 15 15 At3g51570 "disease resistance protein (TIR-NBS-LRR class), putative domain signature TIR-NBS-LRR exists, suggestive of a disease resistance protein." 3 15 16 At3g51620 expressed protein 3 15 17 At3g51770 tetratricopeptide repeat (TPR)-containing protein contains Pfam profile PF00515: TPR Domain 3 15 18 At3g51810 Em-like protein GEA1 (EM1) identical to SP|Q07187 Em-like protein GEA1 (EM1) {Arabidopsis thaliana}; contains Pfam profile PF00477: Small hydrophilic plant seed protein 3 15 19 At3g54320 "ovule development protein, putative similar to ovule development protein aintegumenta (GI:1209099) [Arabidopsis thaliana]" 3 15 20 At3g54380 SAC3/GANP family protein contains Pfam profile: PF03399 SAC3/GANP family 3 15 21 At3g54520 hypothetical protein 3 15 22 At3g54580 "proline-rich extensin-like family protein contains proline-rich extensin domains, INTERPRO:IPR002965" 3 15 23 At3g54760 "dentin sialophosphoprotein-related contains weak similarity to Swiss-Prot:Q9NZW4 dentin sialophosphoprotein precursor (Dentin phosphophoryn DPP, Dentin sialoprotein DSP) [Homo sapiens]" 3 15 24 At3g54820 "aquaporin, putative similar to plasma membrane aquaporin GI:3551133 from [Raphanus sativus]" 3 15 25 At3g54940 "cysteine proteinase, putative contains similarity to cysteine proteinase GI:479060 from [Glycine max]" 3 16 1 At3g54970 expressed protein 3 16 2 At3g57800 basic helix-loop-helix (bHLH) family protein contains Pfam profile: PF00010 helix-loop-helix DNA-binding domain; supported by full-length cDNA gi:20127059 3 16 3 At3g57850 hypothetical protein 3 16 4 At3g58030 "zinc finger (C3HC4-type RING finger) family protein contains Pfam profile: PF00097 zinc finger, C3HC4 type (RING finger)" 3 16 5 At3g58100 glycosyl hydrolase family protein 17 similar to elicitor inducible chitinase Nt-SubE76 GI:11071974 from [Nicotiana tabacum]; C-terminal homology only 3 16 6 At3g58280 hypothetical protein 3 16 7 At3g58340 meprin and TRAF homology domain-containing protein / MATH domain-containing protein similar to ubiquitin-specific protease 12 [Arabidopsis thaliana] GI:11993471; contains Pfam profile PF00917: MATH domain 3 16 8 At3g58500 serine/threonine protein phosphatase PP2A-4 catalytic subunit (PP2A4) identical to SP|P48578 Serine/threonine protein phosphatase PP2A-4 catalytic subunit (EC 3.1.3.16) (Protein phosphatase 2A isoform 4) {Arabidopsis thaliana}; contains Pfam profile PF00149: Ser/Thr protein phosphatase 3 16 9 At3g58560 endonuclease/exonuclease/phosphatase family protein similar to SP|P31384 Glucose-repressible alcohol dehydrogenase transcriptional effector (Carbon catabolite repressor protein 4) {Saccharomyces cerevisiae}; contains Pfam profile PF03372: Endonuclease/Exonuclease/phosphatase family 3 16 10 At3g61280 expressed protein ; expression supported by MPSS 3 16 11 At3g61350 "SKP1 interacting partner 4 (SKIP4) almost idential to SKP1 interacting partner 4 GI:10716953 from [Arabidopsis thaliana], 42 aa extension at N-terminal; contains Pfam profiles PF01344: Kelch motif, PF00646: F-box domain" 3 16 12 At3g61500 hypothetical protein 3 16 13 At3g61550 "zinc finger (C3HC4-type RING finger) family protein similar to RING-H2 zinc finger protein ATL6 [Arabidopsis thaliana] GI:4928403; contains Pfam profile PF00097: Zinc finger, C3HC4 type (RING finger)" 3 16 14 At3g61710 autophagy protein Apg6 family contains weak similarity to Beclin 1 (Coiled-coil myosin-like BCL2-interacting protein) (Protein GT197) (Swiss-Prot:Q14457) [Homo sapiens]; contains Pfam profile PF04111: Autophagy protein Apg6 3 16 15 At3g61760 "dynamin-like protein B (DL1B) identical to dynamin-like protein B [Arabidopsis thaliana] GI:27543504; strong similarity to GTP-binding protein [Arabidopsis thaliana] GI:807577, phragmoplastin SDL5A [Glycine max] GI:1218004; contains Pfam profiles PF01031: Dynamin central region, PF00350: Dynamin family, PF02212: Dynamin GTPase effector domain" 3 16 16 At3g61910 "no apical meristem (NAM) family protein no apical meristem (NAM) - Petunia hybrida, EMBL:PHDNANAM" 3 16 17 At3g61950 basic helix-loop-helix (bHLH) family protein contains Pfam profile: PF00010 helix-loop-helix DNA-binding domain 3 16 18 At4g00905 expressed protein 3 16 19 At4g00955 expressed protein 3 16 20 At4g01100 mitochondrial substrate carrier family protein contains Pfam profile: PF00153 mitochondrial carrier protein 3 16 21 At4g01160 BTB/POZ domain-containing protein contains Pfam PF00651: BTB/POZ domain; contains Interpro IPR000210/ PS50097: BTBB/POZ domain; similar to POZ/BTB containing-protein AtPOB1 (GI:12006855) [Arabidopsis thaliana]; similar to actinfilin (GI:21667852) [Rattus norvegicus] 3 16 22 At4g01310 "ribosomal protein L5 family protein contains Pfam profiles PF00673: ribosomal L5P family C-terminus, PF00281: ribosomal protein L5" 3 16 23 At4g01370 "mitogen-activated protein kinase, putative / MAPK, putative (MPK4) identical to mitogen-activated protein kinase homolog (AtMPK4)[Arabidopsis thaliana] SWISS-PROT:Q39024; PMID:12119167" 3 16 24 At4g01525 expressed protein 3 16 25 At4g01570 pentatricopeptide (PPR) repeat-containing protein contains Pfam profile PF01535: PPR repeat 3 17 1 At4g04400 "hypothetical protein contains Pfam profile PF03384: Drosophila protein of unknown function, DUF287" 3 17 2 At4g04470 peroxisomal membrane protein 22 kDa (PMP22) identical to peroxisomal membrane protein [Arabidopsis thaliana] gi|3980254|emb|CAA06834 3 17 3 At4g04670 "Met-10+ like family protein / kelch repeat-containing protein contains Pfam profiles PF01344: Kelch motif, PF02475: Met-10+ like-protein" 3 17 4 At4g04720 "calcium-dependent protein kinase, putative / CDPK, putative similar to calcium-dependent protein kinase(CDPK) [Carrot] SWISS-PROT:P28582" 3 17 5 At4g04885 pre-mRNA cleavage complex-related contains weak similarity to Pre-mRNA cleavage complex II protein Pcf11 (Fragment) (Swiss-Prot:O94913) [Homo sapiens] 3 17 6 At4g04930 "fatty acid desaturase family protein similar to D. melanogaster Des-1 protein, GenBank accession number X94180; contains Pfam profile PF00487 Fatty acid desaturase domain" 3 17 7 At4g05070 expressed protein 3 17 8 At4g05120 "equilibrative nucleoside transporter, putative (ENT3) identical to putative equilibrative nucleoside transporter ENT3 [Arabidopsis thaliana] GI:16518993; contains similarity to SWISS-PROT:O54699 equilibrative nucleoside transporter 2 (Equilibrative nitrobenzylmercaptopurine riboside-insensitive nucleoside transporter, Equilibrative NBMPR-insensitive nucleoside transporter, Nucleoside transporter, ei-type) [Rattus norvegicus]; contains Pfam profile PF01733: Nucleoside transporter" 3 17 9 At4g09840 expressed protein 3 17 10 At4g09900 "hydrolase, alpha/beta fold family protein similar to ethylene-induced esterase [Citrus sinensis] GI:14279437, polyneuridine aldehyde esterase [Rauvolfia serpentina] GI:6651393, SP|Q40708 PIR7A protein {Oryza sativa}; contains Pfam profile PF00561: hydrolase, alpha/beta fold family" 3 17 11 At4g10040 "cytochrome c, putative similar to cytochrome c [Pumpkin, Winter squash] SWISS-PROT:P00051" 3 17 12 At4g10100 "molybdenum cofactor synthesis family protein similar to Molybdenum cofactor synthesis protein 2 small subunit (Molybdopterin- synthase small subunit) (MOCS2A) (MOCO1-A) (Swiss-Prot:O96033) [Homo sapiens]; contains TIGRFAM TIGR01682: molybdopterin converting factor, subunit 1; contains Pfam PF02597: ThiS family" 3 17 13 At4g10240 "zinc finger (B-box type) family protein zinc-finger protein R2931, Oryza sativa, PIR3:JE0116" 3 17 14 At4g10290 hypothetical protein 3 17 15 At4g10450 "60S ribosomal protein L9 (RPL90D) ribosomal protein L9, cytosolic - garden pea, PIR2:S19978" 3 17 16 At4g10520 subtilase family protein contains similarity to subtilase; SP1 GI:9957714 from [Oryza sativa] 3 17 17 At4g13300 "terpene synthase/cyclase family protein predicted terpene synthase TS1, Arabidopsis thaliana, Y11188" 3 17 18 At4g13345 "TMS membrane family protein / tumour differentially expressed (TDE) family protein contains Pfam domain, PF03348: TMS membrane protein/tumour differentially expressed protein (TDE)" 3 17 19 At4g13500 expressed protein 3 17 20 At4g13540 expressed protein 3 17 21 At4g13710 pectate lyase family protein 3 17 22 At4g13750 expressed protein 3 17 23 At4g13870 Werner Syndrome-like exonuclease (WEX) contains Pfam profile PF01612: 3'-5' exonuclease; identical to Werner Syndrome-like exonuclease [Arabidopsis thaliana] GP:28195109 gb:AAO33765 3 17 24 At4g13940 adenosylhomocysteinase / S-adenosyl-L-homocysteine hydrolase / AdoHcyase (SAHH) identical to SP|O23255 Adenosylhomocysteinase (EC 3.3.1.1) (S-adenosyl-L-homocysteine hydrolase) (AdoHcyase) {Arabidopsis thaliana}; strong similarity to SP|P50248 Adenosylhomocysteinase (EC 3.3.1.1) {Nicotiana sylvestris} 3 17 25 At4g16280 "flowering time control protein / FCA gamma (FCA) identical to SP|O04425 Flowering time control protein FCA {Arabidopsis thaliana}; four alternative splice variants, one splicing isoform contains a non-consensus CA donor splice site, based on cDNA: gi:2204090" 3 18 1 At4g16350 calcineurin B-like protein 6 (CBL6) identical to calcineurin B-like protein 6 (GI:11065943) [Arabidopsis thaliana] 3 18 2 At4g16500 cysteine protease inhibitor family protein / cystatin family protein similar to SP|Q06445 Cysteine proteinase inhibitor (Cystatin) {Vigna unguiculata}; contains Pfam profile PF00031: Cystatin domain 3 18 3 At4g16530 expressed protein contains Pfam profile PF04510: Family of unknown function (DUF577) 3 18 4 At4g16690 "esterase/lipase/thioesterase family protein similar to ethylene-induced esterase [Citrus sinensis] GI:14279437, polyneuridine aldehyde esterase [Rauvolfia serpentina] GI:6651393, SP|Q40708 PIR7A protein {Oryza sativa}; contains Interpro entry IPR000379" 3 18 5 At4g16710 glycosyltransferase family protein 28 low similarity to C terminus subunit of GlcA transferase from Escherichia coli [GI:2586169]; contains Pfam profile PF04101: Glycosyltransferase family 28 C-terminal domain 3 18 6 At4g16835 pentatricopeptide (PPR) repeat-containing protein contains INTERPRO:IPR002885 PPR repeats 3 18 7 At4g16860 "disease resistance protein (TIR-NBS-LRR class), putative domain signature TIR-NBS-LRR exists, suggestive of a disease resistance protein." 3 18 8 At4g19450 nodulin-related weak similarity to nodule-specific protein Nlj70 [Lotus japonicus] GI:3329366 3 18 9 At4g19510 "disease resistance protein (TIR-NBS-LRR class), putative domain signature TIR-NBS-LRR exists, suggestive of a disease resistance protein." 3 18 10 At4g19660 "ankyrin repeat family protein / BTB/POZ domain-containing protein contains Pfam domain, PF00023: Ankyrin repeat and Pfam domain, PF00651: BTB/POZ domain" 3 18 11 At4g19700 expressed protein 3 18 12 At4g19870 kelch repeat-containing F-box family protein contains F-box domain Pfam:PF00646 and Kelch motif Pfam:PF01344 3 18 13 At4g19930 "F-box family protein similar to F-box protein family, AtFBX8 (GI:20197464) {Arabidopsis thaliana}; contains Pfam PF00646: F-box domain" 3 18 14 At4g20080 C2 domain-containing protein contains INTERPRO:IPR000008 C2 domain 3 18 15 At4g20140 "leucine-rich repeat transmembrane protein kinase, putative Cf-2.2, Lycopersicon pimpinellifolium, PIR:T10515" 3 18 16 At4g22920 expressed protein 3 18 17 At4g22980 expressed protein ; expression supported by MPSS 3 18 18 At4g23150 "protein kinase family protein contains Pfam domain, PF00069: Protein kinase domain" 3 18 19 At4g23210 "protein kinase family protein contains Pfam domain, PF00069: Protein kinase domain" 3 18 20 At4g23350 "expressed protein predicted proteins, Arabidopsis thaliana contains Pfam profile PF03080: Arabidopsis proteins of unknown function" 3 18 21 At4g23410 senescence-associated family protein similar to senescence-associated protein 5 [Hemerocallis hybrid cultivar] gi|3551954|gb|AAC34855 3 18 22 At4g23550 WRKY family transcription factor contains Pfam profile: PF03106 WRKY DNA binding domain 3 18 23 At4g23600 "coronatine-responsive tyrosine aminotransferase / tyrosine transaminase similar to nicotianamine aminotransferase from Hordeum vulgare [GI:6498122, GI:6469087]; contains Pfam profile PF00155 aminotransferase, classes I and II; identical to cDNA coronatine-regulated tyrosine aminotransferase (F9D16.70) GI:15076852" 3 18 24 At4g26170 expressed protein 3 18 25 At4g26210 mitochondrial ATP synthase g subunit family protein contains Pfam profile: PF04718 mitochondrial ATP synthase g subunit 3 19 1 At4g26380 DC1 domain-containing protein contains Pfam profile PF03107: DC1 domain 3 19 2 At4g26420 "S-adenosyl-L-methionine:carboxyl methyltransferase family protein similar to caffeine synthase [Camellia sinensis][GI:9967143], defense-related protein cjs1 [Brassica carinata][GI:14009292], S-adenosyl-L-methionine:salicylic acid carboxyl methyltransferase [Clarkia breweri][GI:6002712]" 3 19 3 At4g26570 calcineurin B-like protein 3 (CBL3) identical to calcineurin B-like protein 3 (GI:22136404) [Arabidopsis thaliana] 3 19 4 At4g26610 "protein kinase, putative similar to protein kinase G11A [Oryza sativa] SWISS-PROT:P47997" 3 19 5 At4g26760 microtubule associated protein (MAP65/ASE1) family protein low similarity to protein regulating cytokinesis 1 (PRC1) [Homo sapiens] GI:2865521; contains Pfam profile PF03999: Microtubule associated protein (MAP65/ASE1 family) 3 19 6 At4g26820 hypothetical protein 3 19 7 At4g29400 expressed protein ; expression supported by MPSS 3 19 8 At4g29460 "phospholipase A2 gamma, secretory low molecular weight identical to secretory low molecular weight phospholipase A2 gamma [Arabidopsis thaliana] GI:26006457; contains INTERPRO domain IPR001211 phospholipase A2" 3 19 9 At4g29640 "cytidine deaminase, putative / cytidine aminohydrolase, putative identical to cytidine deaminase 5 (CDA5) [Arabidopsis thaliana] GI:3818578, cytidine deaminase homolog DesG [Arabidopsis thaliana] GI:4836449; similar to cytidine deaminase (CDD) [Arabidopsis thaliana] GI:3046700; contains Pfam profile PF00383: Cytidine and deoxycytidylate deaminase zinc-binding" 3 19 10 At4g29680 type I phosphodiesterase/nucleotide pyrophosphatase family protein similar to SP|P06802 Ectonucleotide pyrophosphatase/phosphodiesterase 1 (Plasma-cell membrane glycoprotein PC-1) [Includes: Alkaline phosphodiesterase I (EC 3.1.4.1); Nucleotide pyrophosphatase (EC 3.6.1.9) {Mus musculus}; contains Pfam profile PF01663: Type I phosphodiesterase / nucleotide pyrophosphatase 3 19 11 At4g29840 "threonine synthase, chloroplast identical to SP|Q9S7B5 Threonine synthase, chloroplast precursor (EC 4.2.3.1) (TS) {Arabidopsis thaliana}" 3 19 12 At4g29880 "leucine-rich repeat family protein contains leucine rich repeats, Pfam:PF00560" 3 19 13 At4g30050 expressed protein ; expression supported by MPSS 3 19 14 At4g30110 "ATPase E1-E2 type family protein / haloacid dehalogenase-like hydrolase family protein / heavy-metal-associated domain-containing protein similar to cadmium efflux pump protein from Geobacillus stearothermophilus [GI:16753175], cadmium resistance protein B from Staphylococcus aureus [GI:14020985]" 3 19 15 At4g32590 ferredoxin-related contains Pfam profile: PF00111 2Fe-2S iron-sulfur cluster binding domain 3 19 16 At4g32630 hypothetical protein 3 19 17 At4g32810 "dioxygenase-related low similarity to b,b-carotene-9',10'-dioxygenase [Mus musculus] GI:12666529; contains Pfam profile PF03055: Retinal pigment epithelial membrane protein" 3 19 18 At4g32850 "nucleotidyltransferase family protein contains Pfam profiles: PF01909 nucleotidyltransferase domain, PF04926 poly(A) polymerase predicted RNA binding domain" 3 19 19 At4g32980 homeobox protein (ATH1) identical to SWISS-PROT:P48731 homeobox protein ATH1. [Arabidopsis thaliana] 3 19 20 At4g33030 UDP-sulfoquinovose synthase / sulfite:UDP-glucose sulfotransferase / sulfolipid biosynthesis protein (SQD1) identical to gi:2736155 3 19 21 At4g33200 "myosin, putative similar to myosin (GI:433663) [Arabidopsis thaliana]" 3 19 22 At4g33260 "WD-40 repeat family protein contains 6 WD-40 repeats (PF00400); WD-repeat protein -Daucus carota, PID:g2253631" 3 19 23 AT5G57480 PC-1 3 19 24 3XSSC PC-1 3 19 25 AT1G29930 PC-1 3 20 1 3XSSC PC-1 3 20 2 AT3G44150 PC-1 3 20 3 3XSSC PC-1 3 20 4 AT4G00810 PC-1 3 20 5 3XSSC PC-1 3 20 6 At4g35820 "oxidoreductase, 2OG-Fe(II) oxygenase family protein similar to prolyl 4-hydroxylase, alpha subunit, from Mus musculus [SP|Q60715], Homo sapiens [GI:18073925]; contains PF03171 2OG-Fe(II) oxygenase superfamily domain" 3 20 7 At4g35880 "aspartyl protease family protein contains Eukaryotic and viral aspartyl proteases active site, PROSITE:PS00141" 3 20 8 At4g36030 armadillo/beta-catenin repeat family protein contains Pfam profile: PF00514 armadillo/beta-catenin-like repeat 3 20 9 At4g36060 basic helix-loop-helix (bHLH) family protein contains Pfam profile: PF00010 helix-loop-helix DNA-binding domain 3 20 10 At4g36210 expressed protein contains Pfam PF05277: Protein of unknown function (DUF726) 3 20 11 At4g36270 "ATP-binding region, ATPase-like domain-containing protein low similarity to microrchidia [Mus musculus] GI:5410255; contains Pfam profile PF02518: ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain protein" 3 20 12 At4g36460 hypothetical protein 3 20 13 At4g36515 expressed protein 3 20 14 At4g39170 "SEC14 cytosolic factor, putative / phosphoglyceride transfer protein, putative similar to phosphatidylinositol transfer-like protein IV (GI:14486707) [Lotus japonicus] and phosphatidylinositol-phosphatidylcholine transfer protein SEC14, Yarrowia lipolytica, PIR2:S43745;contains Pfam PF00650 : CRAL/TRIO domain; contains Pfam PF03765 : CRAL/TRIO, N-terminus" 3 20 15 At4g39230 "isoflavone reductase, putative similar to allergenic isoflavone reductase-like protein Bet v 6.0102 [Betula pendula][GI:10764491]; contains Pfam profile PF02716: Isoflavone reductase" 3 20 16 At4g39330 "mannitol dehydrogenase, putative nearly identical to SP|P42734, probable mannitol dehydrogenase" 3 20 17 At4g39370 "ubiquitin-specific protease 27, putative (UBP27) similar to GI:11993494; ubiquitin specific protease 66 - Gallus gallus,PID:g3800764" 3 20 18 At4g39540 shikimate kinase family protein similar to shikimate kinase precursor from Lycopersicon esculentum [SP|Q00497]; contains Pfam shikimate kinase domain PF01202 3 20 19 At4g39570 kelch repeat-containing F-box family protein contains F-box domain Pfam:PF00646 and Kelch motif Pfam:PF01344 3 20 20 At4g39740 "electron transport SCO1/SenC family protein similar to SP|P23833 SCO1 protein, mitochondrial precursor {Saccharomyces cerevisiae}; contains Pfam profile PF02630: SCO1/SenC" 3 20 21 At4g39770 "trehalose-6-phosphate phosphatase, putative similar to trehalose-6-phosphate phosphatase (AtTPPB) [Arabidopsis thaliana] GI:2944180; contains Pfam profile PF02358: Trehalose-phosphatase" 3 20 22 At5g03310 auxin-responsive family protein similar to indole-3-acetic acid induced protein ARG7 (SP:P32295) [Vigna radiata] 3 20 23 At5g03360 DC1 domain-containing protein contains Pfam profile PF03107: DC1 domain 3 20 24 At5g03500 transcriptional co-activator-related low similarity to transcriptional co-activator CRSP33 [Homo sapiens] GI:4220890 3 20 25 At5g03550 hypothetical protein 3 21 1 At5g03720 heat shock transcription factor family protein contains Pfam profile: PF00447 HSF-type DNA-binding domain 3 21 2 At5g03780 expressed protein 3 21 3 At5g03950 hypothetical protein 3 21 4 At5g04010 expressed protein 3 21 5 At5g06590 expressed protein 3 21 6 At5g06650 "zinc finger (C2H2 type) family protein contains Pfam domain, PF00096: Zinc finger, C2H2 type" 3 21 7 At5g06810 mitochondrial transcription termination factor-related / mTERF-related contains Pfam profile PF02536: mTERF 3 21 8 At5g06870 "polygalacturonase inhibiting protein 2 (PGIP2) identical to polygalacturonase inhibiting protein 2 (PGIP2) [Arabidopsis thaliana] gi|7800201|gb|AAF69828; contains leucine rich-repeat (LRR) domains Pfam:PF00560, INTERPRO:IPR001611" 3 21 9 At5g07030 aspartyl protease family protein contains Pfam profile:PF00026 eukaryotic aspartyl protease 3 21 10 At5g07090 40S ribosomal protein S4 (RPS4B) 3 21 11 At5g07240 calmodulin-binding family protein contains Pfam profile PF00612: IQ calmodulin-binding motif 3 21 12 At5g07300 "copine, putative strong similarity to BONZAI1 [Arabidopsis thaliana] GI:15487382; contains Pfam profile PF00168: C2 domain" 3 21 13 At5g10390 "histone H3 identical to histone H3 from Zea mays SP|P05203, Medicago sativa GI:166384, Encephalartos altensteinii SP|P08903, Pisum sativum SP|P02300; contains Pfam profile PF00125 Core histone H2A/H2B/H3/H4" 3 21 14 At5g10450 14-3-3 protein GF14 lambda (GRF6) (AFT1) identical to 14-3-3 GF14lambda GI:1345595 from [Arabidopsis thaliana] 3 21 15 At5g10610 "cytochrome P450 family protein similar to Cytochrome P450 91A1 (SP:Q9FG65) [Arabidopsis thaliana]; similar to cytochrome P450, Helianthus tuberosus, EMBL:HTCYP81L" 3 21 16 At5g10670 hypothetical protein 97% similarity to At3g28240 (Arabidopsis thaliana); predicted protein 3 21 17 At5g10810 "enhancer of rudimentary protein, putative identical to enhancer of rudimentary homolog SP:Q96319 from [Arabidopsis thaliana]; contains Pfam profile: PF01133 enhancer of rudimentary" 3 21 18 At5g10870 "chorismate mutase, cytosolic (CM2) identical to gi:5732016" 3 21 19 At5g11030 expressed protein 3 21 20 At5g11090 serine-rich protein-related contains some similarity to serine-rich proteins 3 21 21 At5g14230 "ankyrin repeat family protein contains ankyrin repeats, Pfam:PF00023" 3 21 22 At5g14280 "DNA-binding storekeeper protein-related contains similarity to storekeeper protein [Solanum tuberosum] gi|14268476|emb|CAC39398; contains PF04504: Protein of unknown function, DUF573" 3 21 23 At5g14460 pseudouridylate synthase TruB family protein similar to SP|P09171 tRNA pseudouridine synthase B (EC 4.2.1.70) (tRNA pseudouridine 55 synthase) (Pseudouridylate synthase) (Uracil hydrolyase) {Escherichia coli O157:H7}; contains Pfam profile PF01509: TruB family pseudouridylate synthase (N terminal domain) 3 21 24 At5g14520 "pescadillo-related similar to pescadillo [Zebrafish, Danio rerio] SWISS-PROT:P79741" 3 21 25 At5g14670 "ADP-ribosylation factor, putative similar to ADP-ribosylation factor DcARF1 (GI:965483) [Daucus carota]." 3 22 1 At5g14730 expressed protein 3 22 2 At5g14910 heavy-metal-associated domain-containing protein Pfam profile PF00403: Heavy-metal-associated domain 3 22 3 At5g14960 "transcription factor, putative / E2F-like repressor E2L1 (E2L1) identical to E2F-like repressor E2L1 GI:20502504 from [Arabidopsis thaliana]" 3 22 4 At5g17640 expressed protein 3 22 5 At5g17700 MATE efflux family protein similar to ripening regulated protein DDTFR18 [Lycopersicon esculentum] GI:12231296; contains Pfam profile PF01554: Uncharacterized membrane protein family 3 22 6 At5g17840 chaperone protein dnaJ-related similar to bundle sheath defective protein 2 (GI:4732091) [Zea mays] 3 22 7 At5g17900 expressed protein 3 22 8 At5g18080 "auxin-responsive protein, putative similar to GP:3043536 SAUR {Raphanus sativus}" 3 22 9 At5g18130 expressed protein similar to unknown protein (gb|AAF00631.1) 3 22 10 At5g18270 no apical meristem (NAM) family protein contains Pfam PF02365 : No apical meristem (NAM) protein; similar to cup-shaped cotyledon CUC2 (GI:1944132) [Arabidopsis thaliana] 3 22 11 At5g18310 "expressed protein predicted proteins, Drosophila melanogaster" 3 22 12 At5g20920 "eukaryotic translation initiation factor 2 subunit 2, putative / eIF-2-beta, putative similar to SP|P41035 Eukaryotic translation initiation factor 2 subunit (eIF-2-beta) {Oryctolagus cuniculus}; contains Pfam profile PF01873: Domain found in IF2B/IF5" 3 22 13 At5g20960 aldehyde oxidase 1 (AAO1) identical to aldehyde oxidase AAO1 from Arabidopsis thaliana [gi:3172023] isoform contains a GA-donor splice site at intron 10 3 22 14 At5g21125 hypothetical protein 3 22 15 At5g21222 protein kinase family protein contains Pfam profile: PF00069 protein kinase domain 3 22 16 At5g22020 strictosidine synthase family protein similar to SP|P15324 Strictosidine synthase precursor (EC 4.3.3.2) {Rauvolfia mannii}; contains Pfam profile PF03088: Strictosidine synthase 3 22 17 At5g22050 "protein kinase family protein contains protein kinase domain, INTERPRO:IPR000719" 3 22 18 At5g22210 expressed protein 3 22 19 At5g22270 expressed protein similar to unknown protein (gb AAF02129.1) 3 22 20 At5g24900 "cytochrome P450 family protein similar to Cytochrome P450 72A1 (SP:Q05047) [Catharanthus roseus]; fatty acid omega-hydroxylase cytochrome P450 4A11 - Homo sapiens, PIR:I53015" 3 22 21 At5g24960 "cytochrome P450 71A14, putative (CYP71A14) identical to Cytochrome P450 71A14 (SP:P58045) [Arabidopsis thaliana]; cytochrome P450 - Nepeta racemosa, EMBL:Y09423" 3 22 22 At5g25140 "cytochrome P450 family protein CYTOCHROME P450 71B1 - Thlaspi arvense, EMBL:L24438" 3 22 23 At5g25200 hypothetical protein similar to zinc finger protein [Arabidopsis thaliana] GI:976277 3 22 24 At5g25360 expressed protein 3 22 25 At5g25400 "phosphate translocator-related low siimilarity to phosphoenolpyruvate/phosphate translocator precursor [Mesembryanthemum crystallinum] GI:9295275, SP|P52178 Triose phosphate/phosphate translocator, non-green plastid, chloroplast precursor (CTPT) {Brassica oleracea}" 3 23 1 At5g25520 transcription elongation factor-related contains weak similarity to transcription elongation factors 3 23 2 At5g25560 "zinc finger (C3HC4-type RING finger) family protein contains Pfam domain PF00097: Zinc finger, C3HC4 type (RING finger)" 3 23 3 At5g28570 hypothetical protein 3 23 4 At5g28623 hypothetical protein 3 23 5 At5g28790 hypothetical protein 3 23 6 At5g28840 NAD-dependent epimerase/dehydratase family protein similar to sugar epimerase BlmG from Streptomyces verticillus GI:9937230; contains Pfam profile PF01370 NAD dependent epimerase/dehydratase family 3 23 7 At5g29020 hypothetical protein 3 23 8 At5g29602 hypothetical protein 3 23 9 At5g31838 hypothetical protein 3 23 10 At5g32440 expressed protein 3 23 11 At5g37580 "tropomyosin-related low similarity to tropomyosin gene 1, isoform 9D, D.melanogaster, EMBL:DMTRO13 (GI:158696)" 3 23 12 At5g37640 polyubiquitin (UBQ9) identical to polyubiquitin (ubq9) gene sequence GI:304120 from [Arabidopsis thaliana] 3 23 13 At5g37830 "hydantoinase/oxoprolinase family protein contains Pfam profiles: PF02538 hydantoinase B/oxoprolinase, PF01968 hydantoinase/oxoprolinase, PF05378 hydantoinase/oxoprolinase N-terminal region" 3 23 14 At5g37890 "seven in absentia (SINA) protein, putative similar to SIAH1 protein [Brassica napus var. napus] GI:7657876; contains Pfam profile PF03145: Seven in absentia protein family" 3 23 15 At5g38060 expressed protein ; expression supported by MPSS 3 23 16 At5g38120 "4-coumarate--CoA ligase family protein / 4-coumaroyl-CoA synthase family protein similar to 4CL2, Arabidopsis thaliana [gi:12229665], 4CL1, Nicotiana tabacum [gi:12229631]; contains Pfam AMP-binding enzyme domain PF00501" 3 23 17 At5g38290 peptidyl-tRNA hydrolase family protein contains Pfam profile PF01195: peptidyl-tRNA hydrolase 3 23 18 At5g38350 "disease resistance protein (NBS-LRR class), putative domain signature NBS-LRR exists, suggestive of a disease resistance protein." 3 23 19 At5g41180 "leucine-rich repeat protein kinase, putative contains leucine rich repeat (LRR) domains, Pfam:PF00560; contains protein kinase domain, Pfam:PF00069" 3 23 20 At5g41250 exostosin family protein contains Pfam profile: PF03016 exostosin family 3 23 21 At5g41430 "zinc finger (C3HC4-type RING finger) family protein contains Pfam profile: PF00097 zinc finger, C3HC4 type (RING finger)" 3 23 22 At5g41490 F-box family protein contains Pfam profile: PF00646 F-box domain 3 23 23 At5g41660 hypothetical protein similar to unknown protein (emb|CAB86921.1) 3 23 24 At5g41700 "ubiquitin-conjugating enzyme 8 (UBC8) E2; identical to gi:297882, SP:P35131" 3 23 25 At5g41850 expressed protein 3 24 1 At5g41910 RNA polymerase II mediator complex protein-related similar to SP|P87310 RNA polymerase II mediator complex protein nut2 {Schizosaccharomyces pombe} 3 24 2 At5g44560 "SNF7 family protein contains Pfam domain, PF03357: SNF7 family" 3 24 3 At5g44600 expressed protein 3 24 4 At5g44740 UMUC-like DNA repair family protein low similarity to DNA polymerase eta [Homo sapiens] GI:11463971; contains Pfam profile PF00817: ImpB/MucB/SamB family 3 24 5 At5g44780 "expressed protein low similarity to SP|Q38732 DAG protein, chloroplast precursor {Antirrhinum majus}" 3 24 6 At5g44940 F-box family protein contains F-box domain Pfam:PF00646 3 24 7 At5g45000 "Toll-Interleukin-Resistance (TIR) domain-containing protein domain signature TIR exists, suggestive of a disease resistance protein." 3 24 8 At5g45140 "DNA-directed RNA polymerase, putative similar to SP|P22276 DNA-directed RNA polymerase III 130 kDa polypeptide (EC 2.7.7.6) (RNA polymerase III subunit 2) {Saccharomyces cerevisiae}; contains Pfam profiles PF04560: RNA polymerase Rpb2 domain 7, PF04561: RNA polymerase Rpb2 domain 2, PF04565: RNA polymerase Rpb2 domain 3, PF04566: RNA polymerase Rpb2 domain 4, PF04567: RNA polymerase Rpb2 domain 5" 3 24 9 At5g45200 "disease resistance protein (TIR-NBS-LRR class), putative domain signature TIR-NBS-LRR exists, suggestive of a disease resistance protein." 3 24 10 At5g47740 expressed protein 3 24 11 At5g47800 "phototropic-responsive NPH3 family protein contains NPH3 family domain, Pfam:PF03000" 3 24 12 At5g47950 "transferase family protein similar to deacetylvindoline 4-O-acetyltransferase [Catharanthus roseus][GI:4091808][PMID:9681034], acetyl-CoA:benzylalcohol acetyltranferase [Clarkia concinna][GI:6166328][PMID:10588064]" 3 24 13 At5g48010 "pentacyclic triterpene synthase, putative similar to pentacyclic triterpene synthase [gi:6650207] [PMID: 11247608] Contains Pfam domain PF00432: Prenyltransferase and squalene oxidase repeat" 3 24 14 At5g48180 kelch repeat-containing protein contains Pfam PF01344: Kelch motif (5 repeats) ;similar to Tip elongation aberrant protein 1 (Cell polarity protein tea1) (SP:P87061) [Schizosaccharomyces pombe] 3 24 15 At5g48230 "acetyl-CoA C-acyltransferase, putative / 3-ketoacyl-CoA thiolase, putative strong similarity to Acetoacetyl-coenzyme A thiolase (E.C. 2.3.1.9) [Raphanus sativus] GI:1542941; contains InterPro accession IPR002155: Thiolase" 3 24 16 At5g48390 tetratricopeptide repeat (TPR)-containing protein contains Pfam profile PF00515: TPR Domain 3 24 17 At5g48440 FAD-dependent oxidoreductase family protein low similarity to hydrogen cyanide synthase HcnC from Pseudomonas fluorescens [GI:3220203]; contains Pfam profile PF01266 FAD dependent oxidoreductase 3 24 18 At5g51140 pseudouridine synthase family protein low similarity to SP|P23851 Ribosomal large subunit pseudouridine synthase C (EC 4.2.1.70) (Pseudouridylate synthase) (Uracil hydrolyase) {Escherichia coli}; contains Pfam profile PF00849: RNA pseudouridylate synthase 3 24 19 At5g51180 expressed protein 3 24 20 At5g51330 meiosis protein-related (DYAD) (SWI1) annotation temporarily based on supporting cDNA gi|18483289|gb|AF466153.1|; supporting cDNA are SWITCH1 splice variant S and SWITCH1 splice variant L (SWI1) GI:16033413 and GI:16033410 3 24 21 At5g51390 expressed protein similar to unknown protein (gb|AAB68039.1) 3 24 22 At5g51560 "leucine-rich repeat transmembrane protein kinase, putative " 3 24 23 At5g51620 expressed protein 3 24 24 At5g51760 "protein phosphatase 2C, putative / PP2C, putative contains PF00481: Protein phosphatase 2C domain; similar to protein phosphatase 2C (GI:10432446) [Nicotiana tabacum]" 3 24 25 At5g51810 "gibberellin 20-oxidase, putative similar to gibberellin 20-oxidase GI:1109695, GI:9791186" 3 25 1 At5g54570 glycosyl hydrolase family 1 protein contains Pfam PF00232 : Glycosyl hydrolase family 1 domain; TIGRFAM TIGR01233: 6-phospho-beta-galactosidase; similar to amygdalin hydrolase isoform AH I precursor (GI:16757966) [Prunus serotina] 3 25 2 At5g54600 "50S ribosomal protein L24, chloroplast (CL24) identical to SP|P92959 50S ribosomal protein L24, chloroplast precursor {Arabidopsis thaliana}" 3 25 3 At5g54750 "transport protein particle (TRAPP) component Bet3, putative similar to SP|P36149 Transport protein particle 22 kDa subunit (TRAPP 22 kDa subunit) {Saccharomyces cerevisiae}; contains Pfam profile PF04051: Transport protein particle (TRAPP) component, Bet3" 3 25 4 At5g54810 "tryptophan synthase, beta subunit 1 (TSB1) identical to SP|P14671" 3 25 5 At5g54940 "eukaryotic translation initiation factor SUI1, putative similar to SP|P32911 Protein translation factor SUI1 {Saccharomyces cerevisiae}; contains Pfam profile PF01253: Translation initiation factor SUI1" 3 25 6 At5g55000 "potassium channel tetramerisation domain-containing protein / pentapeptide repeat-containing protein contains Pfam profiles PF02214: K+ channel tetramerisation domain, PF00805: Pentapeptide repeats (8 copies)" 3 25 7 At5g55132 expressed protein 3 25 8 At5g55180 glycosyl hydrolase family 17 protein similar to elicitor inducible chitinase Nt-SubE76 GI:11071974 from [Nicotiana tabacum] 3 25 9 At5g57860 ubiquitin family protein contains Pfam profile PF00240: Ubiquitin family 3 25 10 At5g57900 "SKP1/ASK1 interacting partner 1 (SKIP1) / SCF (Skp1-cullin-F-box) ubiquitin ligase identical to SKP1 interacting partner 1 GI:10716947 from [Arabidopsis thaliana], PMID:11387208" 3 25 11 At5g58070 "lipocalin, putative similar to temperature stress-induced lipocalin [Triticum aestivum] GI:18650668" 3 25 12 At5g58130 RNA recognition motif (RRM)-containing protein 3 25 13 At5g58270 mitochondrial half-ABC transporter (STA1) identical to half-molecule ABC transporter ATM3 GI:9964121 from [Arabidopsis thaliana]; almost identical to mitochondrial half-ABC transporter STA1 GI:9187883 from [Arabidopsis thaliana]; identical to cDNA mitochondrial half-ABC transporter (STA1 gene)GI:9187882 3 25 14 At5g58320 kinase interacting protein-related low similarity to kinase interacting protein 1 [Petunia integrifolia] GI:13936326 3 25 15 At5g58460 "cation/hydrogen exchanger, putative (CHX25) similar to Na+/H+-exchanging protein slr1595, Synechocystis sp., PIR:S74951; monovalent cation:proton antiporter family 2 (CPA2) member, PMID:11500563" 3 25 16 At5g58520 "protein kinase family protein contains protein kinase domain, Pfam:PF00069" 3 25 17 At5g61110 hypothetical protein 3 25 18 At5g61150 leo1-like family protein weak similarity to SP|P38439 LEO1 protein {Saccharomyces cerevisiae}; contains Pfam profile PF04004: Leo1-like protein; supporting cDNA gi|21929714|gb|AF490422.1| 3 25 19 At5g61310 "cytochrome c oxidase subunit Vc, putative / COX5C, putative similar to cytochrome c oxidase subunit 5c [Helianthus annuus] GI:18409602; contains Pfam profile PF05799: Cytochrome c oxidase subunit Vc (COX5C)" 3 25 20 At5g61370 pentatricopeptide (PPR) repeat-containing protein contains Pfam profile PF01535: PPR repeat 3 25 21 At5g61530 "small G protein family protein / RhoGAP family protein contains Pfam domain, PF00620: RhoGAP domain" 3 25 22 At5g61550 "protein kinase family protein contains Pfam profile: PF00069 Eukaryotic protein kinase domain; protein kinase 1, PnPK1, Populus nigra, EMBL:AB041503" 3 25 23 At5g61710 hypothetical protein 3 25 24 At5g61770 "brix domain-containing protein contains Pfam domain, PF04427: Brix domain" 3 25 25 At5g64460 expressed protein 3 26 1 At5g64490 expressed protein 3 26 2 At5g64630 transducin family protein / WD-40 repeat family protein Similar to (SP:Q13112) Chromatin assembly factor 1 subunit B (CAF-1 subunit B) (CAF-Ip60) [Homo sapiens] 3 26 3 At5g64680 expressed protein 3 26 4 At5g64816 expressed protein 3 26 5 At5g64860 "4-alpha-glucanotransferase, putative / disproportionating enzyme, putative similar to 4-alpha-glucanotransferase SP:Q06801 from [Solanum tuberosum]" 3 26 6 At5g65010 asparagine synthetase 2 (ASN2) identical to asparagine synthetase (ASN2) [Arabidopsis thaliana] GI:3859536 3 26 7 At5g65050 MADS-box protein (MAF2) 3 26 8 At5g67590 "NADH-ubiquinone oxidoreductase-related contains weak similarity to NADH-ubiquinone oxidoreductase 21 kDa subunit, mitochondrial precursor (EC 1.6.5.3) (EC 1.6.99.3) (Complex I-21KD) (CI-21KD). (Swiss-Prot:P25711) [Neurospora crassa]; contains Pfam PF04800: ETC complex I subunit conserved region" 3 26 9 At1g18010 expressed protein contains 11 transmembrane domains; 3 26 10 At5g36820 F-box family protein contains Pfam PF00646: F-box domain; contains TIGRFAM TIGR01640 : F-box protein interaction domain 3 26 11 At5g50710 hypothetical protein 3 26 12 ath-MIR159b miRNA gene Arabidopsis thaliana miR159b stem-loop 3 26 13 ath-MIR165b miRNA gene Arabidopsis thaliana miR165b stem-loop 3 26 14 ath-MIR399c miRNA gene Arabidopsis thaliana miR399c stem-loop 3 26 15 ath-MIR319c miRNA gene Arabidopsis thaliana miR319c stem-loop 3 26 16 At1g33780 "expressed protein similar to At3g29240 [Arabidopsis thaliana]; contains Pfam profile PF02622: Uncharacterized ACR, COG1678" 3 26 17 At1g33830 avirulence-responsive family protein / avirulence induced gene (AIG1) family protein similar to AIG1 protein SP:P54120 (Arabidopsis thaliana); contains Pfam profile: PF00735 cell division protein (members of this family bind GTP) 3 26 18 At1g34000 light stress-responsive one-helix protein (OHP2) contains similarity to photosystem II 22 kDa protein GI:6006279 from [Arabidopsis thaliana] 3 26 19 At1g34050 "ankyrin repeat family protein contains ankyrin repeat domains, Pfam:PF00023" 3 26 20 At1g34245 expressed protein 3 26 21 At1g34310 transcriptional factor B3 family protein / auxin-responsive factor AUX/IAA-related contains Pfam profile: PF02309 AUX/IAA family 3 26 22 At1g34480 DC1 domain-containing protein contains Pfam protein PF03107 DC1 domain 3 26 23 At1g34550 expressed protein contains Pfam profile PF04765: Protein of unknown function (DUF616); expression supported by MPSS 3 26 24 Blank Blank 3 26 25 Blank Blank 4 1 1 atc05 Randomly generated negative control 4 1 2 atc11 Randomly generated negative control 4 1 3 At5g46430 60S ribosomal protein L32 (RPL32B) 4 1 4 atc01 Randomly generated negative control 4 1 5 Alien7 Control: Stratagene Spotreport Alien Oligo 4 1 6 At1g74970 ribosomal protein S9 (RPS9) identical to ribosomal protein S9 [Arabidopsis thaliana] GI:5456946 4 1 7 atc09 Randomly generated negative control 4 1 8 Alien3 Control: Stratagene Spotreport Alien Oligo 4 1 9 At1g02840 pre-mRNA splicing factor SF2 (SF2) / SR1 protein identical to SP|O22315 Pre-mRNA splicing factor SF2 (SR1 protein) {Arabidopsis thaliana} 4 1 10 At1g02860 "SPX (SYG1/Pho81/XPR1) domain-containing protein / zinc finger (C3HC4-type RING finger) protein-related weak similarity to tripartite motif protein TRIM13 [Mus musculus] GI:12407427, gpStaf50 [Homo sapiens] GI:899300; contains Pfam profiles PF03105: SPX domain, PF00097: Zinc finger, C3HC4 type (RING finger)" 4 1 11 At1g02970 "protein kinase, putative similar to Wee1-like protein GI:5821717 from [Zea mays]" 4 1 12 At1g03010 "phototropic-responsive NPH3 family protein contains NPH3 family domain, Pfam:PF03000" 4 1 13 At1g03140 splicing factor Prp18 family protein contains Pfam profile: PF02840 Prp18 domain 4 1 14 At1g03200 expressed protein 4 1 15 At1g03380 expressed protein 4 1 16 At1g03440 "leucine-rich repeat family protein contains leucine rich-repeat domains Pfam:PF00560, INTERPRO:IPR001611" 4 1 17 At1g06100 fatty acid desaturase family protein similar to delta 9 acyl-lipid desaturase (ADS1) GI:2970034 from [Arabidopsis thaliana] 4 1 18 At1g06135 expressed protein 4 1 19 At1g06280 LOB domain family protein / lateral organ boundaries domain family protein (LBD2) nearly identical to SP|Q9LNB9 Putative LOB domain protein 2 {Arabidopsis thaliana}; similar to lateral organ boundaries (LOB) domain-containing proteins from Arabidopsis thaliana 4 1 20 At1g06350 fatty acid desaturase family protein similar to delta 9 acyl-lipid desaturase (ADS1) GI:2970034 from [Arabidopsis thaliana] 4 1 21 At1g06520 phospholipid/glycerol acyltransferase family protein contains Pfam profile PF01553: Acyltransferase 4 1 22 At1g06580 pentatricopeptide (PPR) repeat-containing protein contains Pfam profile PF01535: PPR repeat 4 1 23 At1g06760 "histone H1, putative similar to histone H1-1 GB:CAA44312 GI:16314 from [Arabidopsis thaliana]; identical to cDNA H1-1C mRNA for histone H1-1 (partial) GI:732560" 4 1 24 At1g06790 "RNA polymerase Rpb7 N-terminal domain-containing protein similar to SP|P35718 DNA-directed RNA polymerase III 25 kDa polypeptide (EC 2.7.7.6) {Saccharomyces cerevisiae}; contains Pfam profile PF03876: RNA polymerase Rpb7, N-terminal domain" 4 1 25 At1g09290 expressed protein This gene is continued on the 5' end of BAC T12M14 4 2 1 At1g09350 "galactinol synthase, putative contains Pfam profile: PF01501 glycosyl transferase family 8" 4 2 2 At1g09500 "cinnamyl-alcohol dehydrogenase family / CAD family similar to cinnamyl alcohol dehydrogenase, Eucalyptus gunnii [gi:1143445], CPRD14 protein, Vigna unguiculata [gi:1854445]" 4 2 3 At1g09550 "pectinacetylesterase, putative similar to pectinacetylesterase precursor GI:1431629 from [Vigna radiata]" 4 2 4 At1g09690 "60S ribosomal protein L21 (RPL21C) Similar to ribosomal protein L21 (gb|L38826). ESTs gb|AA395597,gb|ATTS5197 come from this gene" 4 2 5 At1g09750 "chloroplast nucleoid DNA-binding protein-related contains Pfam profile PF00026: Eukaryotic aspartyl protease;b similar to CND41, chloroplast nucleoid DNA binding protein (GI:2541876) [Nicotiana tabacum]" 4 2 6 At1g09890 expressed protein ; expression supported by MPSS 4 2 7 At1g09935 phosphoglycerate/bisphosphoglycerate mutase family protein contains Pfam profile PF00300: phosphoglycerate mutase family 4 2 8 At1g12530 hypothetical protein ; expression supported by MPSS 4 2 9 At1g12600 hypothetical protein 4 2 10 At1g12780 "UDP-glucose 4-epimerase / UDP-galactose 4-epimerase / Galactowaldenase identical to SP|Q42605 [GB:CAA90941] from [Arabidopsis thaliana] (Arch. Biochem. Biophys. 327 (1), 27-34 (1996))" 4 2 11 At1g12830 expressed protein 4 2 12 At1g13000 expressed protein contains Pfam profile PF05212: Protein of unknown function (DUF707) 4 2 13 At1g13080 "cytochrome P450 family protein identical to gb|D78605 cytochrome P450 monooxygenase from Arabidopsis thaliana and is a member of the PF|00067 Cytochrome P450 family. ESTs gb|Z18072, gb|Z35218 and gb|T43466 come from this gene" 4 2 14 At1g13220 nuclear matrix constituent protein-related similar to nuclear matrix constituent protein 1 (NMCP1) [Daucus carota] GI:2190187 4 2 15 At1g13270 metallopeptidase M24 family protein similar to SP|Q01662 Methionine aminopeptidase 1 precursor (EC 3.4.11.18) {Saccharomyces cerevisiae}; contains Pfam profile PF00557: metallopeptidase family M24 4 2 16 At1g15920 "CCR4-NOT transcription complex protein, putative similar to SWISS-PROT:Q60809 CCR4-NOT transcription complex, subunit 7 (CCR4-associated factor 1, (CAF1) [Mus musculus]" 4 2 17 At1g15970 "methyladenine glycosylase family protein similar to SP|P05100 DNA-3-methyladenine glycosylase I (EC 3.2.2.20) (3-methyladenine-DNA glycosylase I, constitutive) {Escherichia coli}; contains Pfam profile PF03352: Methyladenine glycosylase" 4 2 18 At1g16140 "wall-associated kinase, putative contains similarity to wall-associated kinase 4 GI:3355308 from [Arabidopsis thaliana]" 4 2 19 At1g16210 expressed protein ESTs gb|T04357 and gb|AA595092 come from this gene 4 2 20 At1g16380 "cation/proton exchanger, putative (CHX1) monovalent cation:proton antiporter family 2 (CPA2) member, PMID:11500563" 4 2 21 At1g16420 "latex-abundant protein, putative (AMC8) / caspase family protein similar to latex-abundant protein [Hevea brasiliensis] gb:AAD13216; contains Pfam profile PF00656: ICE-like protease (caspase) p20 domain" 4 2 22 At1g16590 "mitotic spindle checkpoint protein, putative similar to Mad2B protein [Homo sapiens] gi|4835900|gb|AAD30290" 4 2 23 At1g16650 expressed protein 4 2 24 At1g19440 "very-long-chain fatty acid condensing enzyme, putative similar to GB:AAD37122 from [Arabidopsis thaliana]" 4 2 25 At1g19490 bZIP transcription factor family protein contains Pfam profile: PF00170 bZIP transcription factor 4 3 1 At1g19680 expressed protein 4 3 2 At1g19730 thioredoxin H-type 4 (TRX-H-4) (GREN) identical to SP|Q39239 Thioredoxin H-type 4 (TRX-H-4) {Arabidopsis thaliana} 4 3 3 At1g19930 kelch repeat-containing F-box family protein contains F-box domain Pfam:PF00646 and Kelch motif Pfam:PF01344 4 3 4 At1g19990 expressed protein ; expression supported by MPSS 4 3 5 At1g20190 "expansin, putative (EXP11) similar to GB:U30460 from [Cucumis sativus]; alpha-expansin gene family, PMID:11641069" 4 3 6 At1g20260 "vacuolar ATP synthase subunit B, putative / V-ATPase B subunit, putative / vacuolar proton pump B subunit, putative / V-ATPase 57 kDa subunit, putative strong similarity to SP|P11574 Vacuolar ATP synthase subunit B (EC 3.6.3.14) (V-ATPase B subunit) (Vacuolar proton pump B subunit) (V-ATPase 57 kDa subunit) {Arabidopsis thaliana}; contains Pfam profiles PF00006: ATP synthase alpha/beta family nucleotide-binding domain, PF02874: ATP synthase alpha/beta family beta-barrel domain" 4 3 7 At1g22970 expressed protein 4 3 8 At1g23020 "ferric-chelate reductase, putative similar to ferric-chelate reductase (FRO1) [Pisum sativum] GI:15341529; contains Pfam profile PF01794: Ferric reductase like transmembrane component" 4 3 9 At1g23160 "auxin-responsive GH3 family protein similar to auxin-responsive GH3 product [Glycine max] GI:18591, auxin-responsive GH3 homologue [Arabidopsis thaliana] GI:11041726; contains Pfam profile PF03321: GH3 auxin-responsive promoter" 4 3 10 At1g23210 "glycosyl hydrolase family 9 protein similar to endo-1,4-beta-glucanase GB:CAA67157 GI:2440035 from (Arabidopsis thaliana)" 4 3 11 At1g23360 "UbiE/COQ5 methyltransferase family protein similar to 2-hexaprenyl-1,4-naphthoquinone methyltransferase GB:BAA25267 GI:2982680 from [Micrococcus luteus]; contains Pfam profile PF01209: methlytransferase, UbiE/COQ5 family" 4 3 12 At1g23400 expressed protein 4 3 13 At1g23540 "protein kinase family protein contains Pfam domain, PF00069: Protein kinase domain" 4 3 14 At1g23600 expressed protein contains Pfam profile PF02713: Domain of unknown function DUF220; expression supported by MPSS 4 3 15 At1g27320 histidine kinase (AHK3) identical to histidine kinase AHK3 [Arabidopsis thaliana] gi|13537198|dbj|BAB40775 4 3 16 At1g27370 squamosa promoter-binding protein-like 10 (SPL10) identical to squamosa promoter binding protein-like 10 [Arabidopsis thaliana] GI:5931669; contains Pfam profile PF03110: SBP domain 4 3 17 At1g27480 lecithin:cholesterol acyltransferase family protein / LACT family protein similar to LCAT-like lysophospholipase (LLPL) [Homo sapiens] GI:4589720; contains Pfam profile PF02450: Lecithin:cholesterol acyltransferase (phosphatidylcholine-sterol acyltransferase) 4 3 18 At1g27540 "F-box family protein similar to F-box protein family, AtFBX7 (GI:20197899) [Arabidopsis thaliana]; confirmed by FLcDNA GI:16604421; contains uncharacterized Arabidoppsis domain shared by 33 Arabidopsis proteins" 4 3 19 At1g27695 glycine-rich protein 4 3 20 At1g27750 ubiquitin system component Cue domain-containing protein very low similarity to ASC-1 complex subunit P100 [Homo sapiens] GI:12061187; contains Pfam profile PF02845: CUE domain 4 3 21 At1g27920 microtubule associated protein (MAP65/ASE1) family protein low similarity to protein regulating cytokinesis 1 (PRC1) [Homo sapiens] GI:2865521; contains Pfam profile PF03999: Microtubule associated protein (MAP65/ASE1 family) 4 3 22 At1g27980 pyridoxal-dependent decarboxylase family protein similar to sphingosine-1-phosphate lyase [Homo sapiens] GI:10129683; contains Pfam profile PF00282: Pyridoxal-dependent decarboxylase conserved domain 4 3 23 At1g30880 expressed protein similar to ESTs gb|R30049 and gb|T46176 4 3 24 At1g30950 unusual floral organ (UFO) / F-box family protein (FBX1) E3 ubiquitin ligase SCF complex F-box subunit; almost identical to unusual floral organs (UFO)GI:4376159 from [Arabidopsis thaliana] Landsberg-erecta; one amino acid difference 4 3 25 At1g31160 "zinc-binding protein, putative / protein kinase C inhibitor, putative similar to 14 kDa zinc-binding protein (Protein kinase C inhibitor, PKCI) [Zea mays] Swiss-Prot:P42856" 4 4 1 At1g31200 expressed protein 4 4 2 At1g31380 hypothetical protein 4 4 3 At1g31440 SH3 domain-containing protein 1 (SH3P1) nearly identical to SH3 domain-containing protein 1 [Arabidopsis thaliana] GI:16974676; contains Pfam profile PF00018: SH3 domain 4 4 4 At1g31650 expressed protein contains Pfam profile PF03759: Domain of unknown function (DUF315) 4 4 5 At1g31720 expressed protein 4 4 6 At1g34770 MAGE-8 antigen-related contains weak similarity to Swiss-Prot:P43361 melanoma-associated antigen 8 (MAGE-8 antigen) [Homo sapiens] 4 4 7 At1g35030 hypothetical protein 4 4 8 At1g35260 "Bet v I allergen family protein similar to Csf-2 [Cucumis sativus][GI:5762258][J Am Soc Hortic Sci 124, 136-139 (1999)] contains Pfam profile PF00407: Pathogenesis-related protein Bet v I family" 4 4 9 At1g35340 ATP-dependent protease La (LON) domain-containing protein contains Pfam profile PF02190: ATP-dependent protease La (LON) domain 4 4 10 At1g35540 "transcriptional factor B3 family protein / auxin-responsive factor AUX/IAA-related contains Pfam profiles: PF02362 B3 DNA binding domain, PF02309: AUX/IAA family" 4 4 11 At1g35614 hypothetical protein 4 4 12 At1g35830 VQ motif-containing protein contains PF05678: VQ motif 4 4 13 At1g35910 "trehalose-6-phosphate phosphatase, putative similar to trehalose-6-phosphate phosphatase (AtTPPB) [Arabidopsis thaliana] GI:2944180; contains Pfam profile PF02358: Trehalose-phosphatase" 4 4 14 At1g47485 expressed protein 4 4 15 At1g47530 "ripening-responsive protein, putative similar to ripening regulated protein DDTFR18 [Lycopersicon esculentum] GI:12231296; contains Pfam profile PF01554: Uncharacterized membrane protein family" 4 4 16 At1g47710 "serpin, putative / serine protease inhibitor, putative similar to phloem serpin-1 [Cucurbita maxima] GI:9937311; contains Pfam profile PF00079: Serpin (serine protease inhibitor)" 4 4 17 At1g47765 F-box family protein contains F-box domain Pfam:PF00646 4 4 18 At1g47915 F-box family protein contains F-box domain Pfam:PF00646 ; similar to SKP1 interacting partner 2 (SKIP2) TIGR_Ath1:At5g67250 4 4 19 At1g47990 "gibberellin 2-oxidase, putative / GA2-oxidase, putative similar to GA2ox1 [GI:4678366]; similar to dioxygenase GB:CAA70330 GI:1666096 from [Marah macrocarpus]; contains PF03171 2OG-Fe(II) oxygenase superfamily domain" 4 4 20 At1g48145 hypothetical protein 4 4 21 At1g48190 hypothetical protein 4 4 22 At1g51260 "acyl-CoA:1-acylglycerol-3-phosphate acyltransferase, putative similar to acyl-CoA:1-acylglycerol-3-phosphate acyltransferase GI:4583544 from [Brassica napus]" 4 4 23 At1g51320 F-box family protein (FBX11) contains F-box domain PF:00646 4 4 24 At1g51460 "ABC transporter family protein similar to SP|Q9UNQ0 ATP-binding cassette, sub-family G, member 2 (Placenta-specific ATP- binding cassette transporter) (Breast cancer resistance protein) {Homo sapiens}; contains Pfam profile PF00005: ABC transporter" 4 4 25 At1g51520 "expressed protein contains a weak hit to PF00076: RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)" 4 5 1 At1g51660 "mitogen-activated protein kinase kinase (MAPKK), putative (MKK4) identical to MAP kinase kinase 4 [Arabidopsis thaliana] gi|3219271|dbj|BAA28830 gi_13265419" 4 5 2 At1g51690 "serine/threonine protein phosphatase 2A (PP2A) 55 kDa regulatory subunit B identical to 55 kDa B regulatory subunit of phosphatase 2A (GI:710330) [Arabidopsis thaliana]; similar to type 2A protein serine/threonine phosphatase 55 kDa B regulatory GI:1408460 [Arabidopsis thaliana]; contains Pfam PF00400: WD domain, G-beta repeat (5 copies, 3 weak)" 4 5 3 At1g51850 "leucine-rich repeat protein kinase, putative similar to light repressible receptor protein kinase [Arabidopsis thaliana] gi|1321686|emb|CAA66376" 4 5 4 At1g51910 "protein kinase family protein contains Serine/Threonine protein kinases active-site signature, PROSITE:PS00108" 4 5 5 At1g54530 calcium-binding EF hand family protein contains INTERPRO:IPR002048 calcium-binding EF-hand domain 4 5 6 At1g54580 "acyl carrier protein, chloroplast, putative / ACP, putative strong similarity to SP|P25701 Acyl carrier protein 2, chloroplast precursor (ACP) {Arabidopsis thaliana}; contains InterPro accession IPR003881: Isochorismatase" 4 5 7 At1g54770 expressed protein 4 5 8 At1g54830 "CCAAT-box binding transcription factor Hap5a, putative similar to heme activated protein GI:6289057 from (Arabidopsis thaliana) GI:14577940 CCAAT-binding protein subunit HAP5 {Hypocrea jecorina} similar to Transcription factor GB:CAA74053 GI:2398533 from [Arabidopsis thaliana] similarity to transcription factor Hap5a similar to transcription factor Hap5a [Arabidopsis thaliana](GI:6523090)" 4 5 9 At1g54970 proline-rich family protein similar to proline-rich protein GI:170048 from [Glycine max] 4 5 10 At1g55030 F-box family protein contains F-box domain Pfam:PF00646 4 5 11 At1g55220 hypothetical protein 4 5 12 At1g55265 "expressed protein contains Pfam profile PF04398: Protein of unknown function, DUF538" 4 5 13 At1g59730 "thioredoxin, putative similar to SP|Q38879 Thioredoxin H-type 2 (TRX-H-2) {Arabidopsis thaliana}; contains Pfam profile: PF00085 Thioredoxin" 4 5 14 At1g59790 cullin-related low similarity to Hs-CUL-1 [Homo sapiens] GI:1381142 4 5 15 At1g59910 "formin homology 2 domain-containing protein / FH2 domain-containing protein contains formin homology 2 domain, Pfam:PF02128" 4 5 16 At1g59970 matrixin family protein similar to SP|P29136 Metalloendoproteinase 1 precursor (EC 3.4.24.-) (SMEP1) {Glycine max}; contains InterPro accession IPR001818: Matrixin 4 5 17 At1g60160 "potassium transporter family protein similar to potassium transporter HAK2p [Mesembryanthemum crystallinum] gi|14091471|gb|AAK53759; KUP/HAK/KT Transporter family member, PMID:11500563; contains Pfam profile PF02705: K+ potassium transporter" 4 5 18 At1g60230 radical SAM domain-containing protein contains Pfam profile PF04055: radical SAM domain protein 4 5 19 At1g60460 hypothetical protein 4 5 20 At1g60550 "naphthoate synthase, putative / dihydroxynaphthoic acid synthetase, putative / DHNA synthetase, putative contains similarity to MENB from Escherichia coli [SP|P27290], Bacillus subtilis [SP|P23966]; contains Pfam profile PF00378 enoyl-CoA hydratase/isomerase family protein" 4 5 21 At1g63350 "disease resistance protein (CC-NBS-LRR class), putative domain signature CC-NBS-LRR exists, suggestive of a disease resistance protein." 4 5 22 At1g63410 expressed protein contains Pfam profile PF04525: Protein of unknown function (DUF567); expression supported by MPSS 4 5 23 At1g63600 protein kinase-related low similarity to receptor-like protein kinase 5 [Arabidopsis thaliana] GI:13506747; contains Pfam profile: PF01657 Domain of unknown function DUF26 4 5 24 At1g63640 kinesin motor protein-related C-terminal region is similar to C-term region of kinesin motor protein GB:AAB51397 (Mus musculus); contains Pfam profile: PF00225 Kinesin motor domain 4 5 25 At1g63770 peptidase M1 family protein similar to SP|P04825 Aminopeptidase N (EC 3.4.11.2) (Alpha-aminoacylpeptide hydrolase) {Escherichia coli}; contains Pfam profile PF01433: Peptidase family M1 4 6 1 At1g63830 "proline-rich family protein contains proline-rich extensin domains, INTERPRO:IPR002965; contains 1 predicted transmembrane domain" 4 6 2 At1g63970 "2C-methyl-D-erythritol 2,4-cyclodiphosphate synthase, putative similar to 2C-methyl-D-erythritol 2,4-cyclodiphosphate synthase GI:7621712 from [Catharanthus roseus]" 4 6 3 At1g64020 serpin-related / serine protease inhibitor-related similar to phloem serpin-1 [Cucurbita maxima] GI:9937311 4 6 4 At1g66820 glycine-rich protein 4 6 5 At1g66880 "serine/threonine protein kinase family protein contains protein kinase domain, Pfam:PF00069; contains serine/threonine protein kinase domain, INTERPRO:IPR002290" 4 6 6 At1g67040 expressed protein ; expression supported by MPSS 4 6 7 At1g67090 "ribulose bisphosphate carboxylase small chain 1A / RuBisCO small subunit 1A (RBCS-1A) (ATS1A) identical to SP|P10795 Ribulose bisphosphate carboxylase small chain 1A, chloroplast precursor (EC 4.1.1.39) (RuBisCO small subunit 1A) {Arabidopsis thaliana}" 4 6 8 At1g67280 "lactoylglutathione lyase, putative / glyoxalase I, putative similar to putative lactoylglutathione lyase SP:Q39366, GI:2494843 from [Brassica oleracea]" 4 6 9 At1g67320 "DNA primase, large subunit family contains Pfam profile PF04104: Eukaryotic-type DNA primase, large subunit; similar to DNA primase large subunit (EC 2.7.7.-) (DNA primase 58 kDa subunit) (p58) (Swiss-Prot:P49643) [Homo sapiens]" 4 6 10 At1g67490 "alpha-glucosidase I (GCS1) / KNOPF (KNF) identical to alpha-glucosidase I (GI:16506680, GI:13398928) [Arabidopsis thaliana]" 4 6 11 At1g67550 "urease, putative / urea amidohydrolase, putative similar to SP|P07374 Urease (EC 3.5.1.5) (Urea amidohydrolase) {Canavalia ensiformis}; contains Pfam profile PF01979: Amidohydrolase family" 4 6 12 At1g70180 sterile alpha motif (SAM) domain-containing protein contains Pfam profile PF00536: SAM domain (Sterile alpha motif) 4 6 13 At1g70230 expressed protein 4 6 14 At1g70410 "carbonic anhydrase, putative / carbonate dehydratase, putative similar to SP|P42737 Carbonic anhydrase 2 (EC 4.2.1.1) (Carbonate dehydratase 2) {Arabidopsis thaliana}; contains Pfam profile PF00484: Carbonic anhydrase" 4 6 15 At1g70460 "protein kinase, putative contains Pfam PF00069: Protein kinase domain" 4 6 16 At1g70580 "glutamate:glyoxylate aminotransferase 2 (GGT2) identical to glutamate:glyoxylate aminotransferase 2 [Arabidopsis thaliana] GI:24461829; similar to alanine aminotransferase from Panicum miliaceum [SP|P34106], GI:4730884 from Oryza sativa; contains Pfam profile PF00155: aminotransferase, classes I and II" 4 6 17 At1g70630 expressed protein 4 6 18 At1g70790 C2 domain-containing protein similar to zinc finger and C2 domain protein GI:9957238 from [Arabidopsis thaliana] 4 6 19 At1g70830 "Bet v I allergen family protein similar to Csf-2 [Cucumis sativus][GI:5762258][J Am Soc Hortic Sci 124, 136-139 (1999)] ; contains Pfam profile PF00407: Pathogenesis-related protein Bet v I family" 4 6 20 At1g73660 protein kinase family protein contains Pfam profile: PF00069 eukaryotic protein kinase domain 4 6 21 At1g73720 transducin family protein / WD-40 repeat family protein contains 5 WD-40 repeats (PF00400); similar to Will die slowly protein (SP:Q9V3J8)[Drosophila melanogaster] 4 6 22 At1g73880 UDP-glucoronosyl/UDP-glucosyl transferase family protein contains Pfam profile: PF00201 UDP-glucoronosyl and UDP-glucosyl transferase 4 6 23 At1g73940 expressed protein 4 6 24 At1g74090 sulfotransferase family protein similar to SP|P52837 Flavonol 4'-sulfotransferase (EC 2.8.2.-) (F4-ST) {Flaveria chloraefolia}; contains Pfam profile PF00685: Sulfotransferase domain 4 6 25 At1g74150 "kelch repeat-containing protein low similarity to rngB protein, Dictyostelium discoideum, PIR:S68824; contains Pfam profile PF01344: Kelch motif" 4 7 1 At1g74325 expressed protein ; expression supported by MPSS 4 7 2 At1g74380 "galactosyl transferase GMA12/MNN10 family protein very low similarity to alpha-1,2-galactosyltransferase, Schizosaccharomyces pombe [SP|Q09174]" 4 7 3 AT5G57480 PC-1 4 7 4 3XSSC PC-1 4 7 5 AT1G29930 PC-1 4 7 6 3XSSC PC-1 4 7 7 AT3G44150 PC-1 4 7 8 3XSSC PC-1 4 7 9 AT4G00810 PC-1 4 7 10 3XSSC PC-1 4 7 11 At1g77140 "vacuolar protein sorting protein 45, putative / VPS45p, putative identical to vacuolar protein sorting homolog VPS45p [Arabidopsis thaliana] gi|2921406|gb|AAC39472" 4 7 12 At1g77200 "AP2 domain-containing transcription factor TINY, putative similar to transcription factor TINY (GI:1246403) [Arabidopsis thaliana] similar to TINY (GP:1246403) [Arabidopsis thaliana] similar to TINY (GP:1246403) [Arabidopsis thaliana]" 4 7 13 At1g77380 "amino acid carrier, putative / amino acid permease, putative strong similarity to amino acid carrier GI:3293031 from [Ricinus communis]; contains Pfam profile PF01490: Transmembrane amino acid transporter protein; identical to cDNA AAP3 (Amino Acid Permease) GI:3970651" 4 7 14 At1g77440 20S proteasome beta subunit C (PBC2) identical to residues 14-204 of 20S proteasome beta subunit PBC2 GB:AAC32069 [Arabidopsis thaliana] 4 7 15 At1g77610 "glucose-6-phosphate/phosphate translocator-related similar to glucose-6-phosphate/phosphate-translocators from [Mesembryanthemum crystallinum] GI:9295277, [Solanum tuberosum] GI:2997593, [Pisum sativum] GI:2997591; contains Pfam profile PF00892: Integral membrane protein" 4 7 16 At1g77660 MORN (Membrane Occupation and Recognition Nexus) repeat-containing protein /phosphatidylinositol-4-phosphate 5-kinase-related low similarity to phosphatidylinositol-4-phosphate 5-kinase AtPIP5K1 [Arabidopsis thaliana] GI:3702691; contains Pfam profile PF02493: MORN repeat 4 7 17 At1g77810 galactosyltransferase family protein contains Pfam profile PF01762: Galactosyltransferase 4 7 18 At1g77850 transcriptional factor B3 family protein similar to auxin response factor 10 GI:6165644 from [Arabidopsis thaliana]; contains Pfam profile PF02362: B3 DNA binding domain 4 7 19 At1g80420 "DNA repair protein, putative (XRCC1) identical to putative DNA repair protein XRCC1 [Arabidopsis thaliana] GI:11181954; contains Pfam domain, PF00533: BRCA1 C Terminus (BRCT) domain" 4 7 20 At1g80470 F-box family protein contains F-box domain Pfam:PF00646 4 7 21 At1g80650 double-stranded RNA-binding domain (DsRBD)-containing protein contains Pfam profile PF00035: Double-stranded RNA binding motif 4 7 22 At1g80710 transducin family protein / WD-40 repeat family protein contains 3 WD-40 repeats (PF00400); similar to damage-specific DNA-binding protein 2 (DDB2) [Mus musculus] 4 7 23 At1g80865 expressed protein 4 7 24 At1g80920 "DNAJ heat shock N-terminal domain-containing protein similar to SP|Q05646 Chaperone protein dnaJ Erysipelothrix rhusiopathiae, SP|P45555 Chaperone protein dnaJ (HSP40) Staphylococcus aureus; contains Pfam profile PF00226 DnaJ domain" 4 7 25 At2g01100 expressed protein 4 8 1 At2g01150 "zinc finger (C3HC4-type RING finger) family protein contains Pfam profile: PF00097 zinc finger, C3HC4 type (RING finger)" 4 8 2 At2g04063 glycine-rich protein 4 8 3 At2g04135 hypothetical protein 4 8 4 At2g04370 hypothetical protein 4 8 5 At2g04420 expressed protein 4 8 6 At2g04580 hypothetical protein 4 8 7 At2g04675 expressed protein 4 8 8 At2g04865 expressed protein ; expression supported by MPSS 4 8 9 At2g04920 "F-box family protein (FBX9) identical to F-box protein family, AtFBX9 (GI:20197985) [Arabidopsis thaliana]; contains F-box domain PF:00646; contains TIGRFAM TIGR01640 : F-box protein interaction domain" 4 8 10 At2g12170 expressed protein 4 8 11 At2g12345 hypothetical protein 4 8 12 At2g13070 hypothetical protein 4 8 13 At2g13290 "glycosyl transferase family 17 protein low similarity to beta-1,4-mannosyl-glycoprotein beta-1,4-N-acetylglucosaminyltransferase (EC 2.4.1.144) from Mus musculus [SP|Q10470], Rattus norvegicus [SP|Q02527], Homo sapiens [SP|Q09327] ; contains Pfam profile PF04724 :Glycosyltransferase family 17" 4 8 14 At2g13620 "cation/hydrogen exchanger, putative (CHX15) monovalent cation:proton antiporter family 2 (CPA2) member, PMID:11500563" 4 8 15 At2g13660 expressed protein 4 8 16 At2g13975 Expressed protein 4 8 17 At2g14045 expressed protein 4 8 18 At2g17260 "glutamate receptor family protein (GLR3.1) (GLR2) identical to putative glutamate receptor GLR2 [Arabidopsis thaliana] gi|4185740|gb|AAD09174; plant glutamate receptor family, PMID:11379626" 4 8 19 At2g17305 hypothetical protein 4 8 20 At2g17520 "protein kinase family protein / Ire1 homolog-2 (IRE1-2) contains protein kinase domain, Pfam:PF00069; identical to Ire1 homolog-2 [Arabidopsis thaliana] GI:15277139, cDNA Ire1 homolog-2 GI:15277138" 4 8 21 At2g17570 undecaprenyl pyrophosphate synthetase family protein / UPP synthetase family protein contains putative undecaprenyl diphosphate synthase domain [PF01255]; similar to dehydrodolichyl diphosphate synthetase (DEDOL-PP synthase) [GI:796076] and S. cerevisiae Rer2 [SP|P35196] 4 8 22 At2g17730 "zinc finger (C3HC4-type RING finger) family protein contains Pfam PF00097: Zinc finger, C3HC4 type (RING finger) domain; similar to RING-H2 finger protein RHA3a (GI:3790573) [Arabidopsis thaliana]; similar to ReMembR-H2 protein JR700 (GI:6942147) [Arabidopsis thaliana]" 4 8 23 At2g17785 zinc-binding protein-related similar to zinc-binding protein [Pisum sativum] GI:16117799 4 8 24 At2g17960 hypothetical protein 4 8 25 At2g18000 YEATS family protein contains Pfam domain PF03366: YEATS family 4 9 1 At2g20725 CAAX amino terminal protease family protein contains Pfam profile PF02517 CAAX amino terminal protease family protein 4 9 2 At2g20770 "lanthionine synthetase C-like family protein contains Pfam domain, PF05147: Lanthionine synthetase C-like protein" 4 9 3 At2g20870 "cell wall protein precursor, putative identical to Putative cell wall protein precursor (Swiss-Prot:P47925) [Arabidopsis thaliana]; weak similarity to mu-protocadherin (GI:7861967) [Rattus norvegicus]" 4 9 4 At2g20920 expressed protein 4 9 5 At2g21080 expressed protein 4 9 6 At2g21140 hydroxyproline-rich glycoprotein family protein identical to proline-rich protein 2 [Arabidopsis thaliana] gi|7620011|gb|AAF64549 4 9 7 At2g21250 "mannose 6-phosphate reductase (NADPH-dependent), putative 6-phosphate reductase [Apium graveolens][GI:1835701], NADP-dependent D-sorbitol-6-phosphate dehydrogenase [Malus domestica][SP|P28475]" 4 9 8 At2g21320 zinc finger (B-box type) family protein 4 9 9 At2g24200 "cytosol aminopeptidase identical to cytosol aminopeptidase SP:P30184 from [Arabidopsis thaliana]; contains Pfam profiles: PF00883 cytosol aminopeptidase family catalytic domain, PF02789: cytosol aminopeptidase family N-terminal domain" 4 9 10 At2g24255 hypothetical protein 4 9 11 At2g24420 DNA repair ATPase-related contains 2 transmembrane domains; similar to DNA double-strand break repair rad50 ATPase. (Swiss-Prot:O33600) [Sulfolobus acidocaldarius] 4 9 12 At2g24480 "zinc finger (C3HC4-type RING finger) family protein low similarity to RING-H2 finger protein RHY1a [Arabidopsis thaliana] GI:3790593; contains Pfam profile PF00097: Zinc finger, C3HC4 type (RING finger)" 4 9 13 At2g24640 "ubiquitin carboxyl-terminal hydrolase family protein / zinc finger (MYND type) family protein similar to ubiquitin-specific protease 15 (UBP15) [Arabidopsis thaliana] GI:11993475; contains Pfam profiles PF00443: Ubiquitin carboxyl-terminal hydrolase, PF01753: MYND finger" 4 9 14 At2g24700 "transcriptional factor B3 family protein low similarity to reproductive meristem gene 1 from [Brassica oleracea var. botrytis] GI:3170424, [Arabidopsis thaliana] GI:13604227; contains Pfam profile PF02362: B3 DNA binding domain" 4 9 15 At2g24900 "hypothetical protein includes At2g24900, At5g35040, At3g30500, At4g07690" 4 9 16 At2g24950 hypothetical protein contains Pfam profile PF03080: Arabidopsis proteins of unknown function 4 9 17 At2g27660 DC1 domain-containing protein contains Pfam profile PF03107: DC1 domain 4 9 18 At2g27710 60S acidic ribosomal protein P2 (RPP2B) 4 9 19 At2g27830 expressed protein 4 9 20 At2g27900 expressed protein 4 9 21 At2g28070 ABC transporter family protein 4 9 22 At2g28110 exostosin family protein contains 1 transmembrane domain; similar to pectin-glucuronyltransferase (GI:23821292) [Nicotiana plumbaginifolia]; similar to NpGUT1 homolog (GI:23821294) [Arabidopsis thaliana]; contains Pfam profile PF03016: Exostosin family 4 9 23 At2g28290 "chromatin remodeling protein, putative (SYD) similar to transcriptional activator HBRM [Homo sapiens] GI:414117; contains Pfam profiles PF00271: Helicase conserved C-terminal domain, PF00176: SNF2 family N-terminal domain; identical to cDNA putative chromatin remodeling protein SYD (SPLAYED) GI:13603720" 4 9 24 At2g28320 "pleckstrin homology (PH) domain-containing protein / lipid-binding START domain-containing protein contains Pfam profiles PF01852: START domain, PF00169: PH domain" 4 9 25 At2g31060 "elongation factor family protein contains Pfam profiles: PF00009 elongation factor Tu GTP binding domain, PF00679 elongation factor G C-terminus, PF03144 elongation factor Tu domain 2" 4 10 1 At2g31090 expressed protein 4 10 2 At2g31260 autophagy 9 (APG9) identical to autophagy 9 protein GI:19912149 from [Arabidopsis thaliana] 4 10 3 At2g31310 LOB domain protein 14 / lateral organ boundaries domain protein 14 (LBD14) identical to SP|Q9SJW5| LOB domain protein 14 {Arabidopsis thaliana} 4 10 4 At2g31460 hypothetical protein contains Pfam profile PF03754: Domain of unknown function (DUF313) 4 10 5 At2g31530 secY family protein low similarity to SP|P31159 Preprotein translocase secY subunit {Synechococcus sp}; contains Pfam profile PF00344: eubacterial secY protein 4 10 6 At2g31690 lipase class 3 family protein similar to DEFECTIVE IN ANTHER DEHISCENCE1 [Arabidopsis thaliana] GI:16215706; contains Pfam profile PF01764: Lipase 4 10 7 At2g31740 expressed protein 4 10 8 At2g34310 expressed protein 4 10 9 At2g34355 nodulin-related contains 14 transmembrane domains; supported by tandem duplication of nodulin -related protein (TIGR_Ath1:At2g34350) [Arabidopsis thaliana] 4 10 10 At2g34480 60S ribosomal protein L18A (RPL18aB) 4 10 11 At2g34530 expressed protein 4 10 12 At2g34680 "leucine-rich repeat family protein contains leucine rich repeat (LRR) domains, Pfam:PF00560; identical to cDNA hypothetical protein (AIR9) mRNA, partial cds GI:3695020" 4 10 13 At2g34740 "protein phosphatase 2C, putative / PP2C, putative contains PF00481: Protein phosphatase 2C domain; similar to protein phosphatase type 2C (GI:4336436) [Lotus japonicus]" 4 10 14 At2g34920 ubiquitin-protein ligase-related contains weak similarity to Ubiquitin-protein ligase E3 Mdm2 (EC 6.3.2.-) (p53-binding protein Mdm2) (Oncoprotein Mdm2) (Double minute 2 protein) (Swiss-Prot:P23804) [Mus musculus] 4 10 15 At2g34990 "zinc finger (C3HC4-type RING finger) family protein contains Pfam profile: PF00097: Zinc finger, C3HC4 type (RING finger)" 4 10 16 At2g37560 origin recognition complex subunit 2 (ORC2) identical to origin recognition complex subunit 2 (ORC2) SP:Q38899 from [Arabidopsis thaliana] 4 10 17 At2g37600 60S ribosomal protein L36 (RPL36A) 4 10 18 At2g37760 "aldo/keto reductase family protein similar to chalcone reductase [Sesbania rostrata][GI:2792155], and aldose reductase ALDRXV4 [Xerophyta viscosa][GI:4539944], [Hordeum vulgare][GI:728592]" 4 10 19 At2g37810 "CHP-rich zinc finger protein, putative " 4 10 20 At2g37975 expressed protein 4 10 21 At2g38025 expressed protein 4 10 22 At2g38185 "zinc finger (C3HC4-type RING finger) family protein contains Pfam profile PF00097: Zinc finger, C3HC4 type (RING finger)" 4 10 23 At2g38230 "stress-responsive protein, putative similar to ethylene-inducible protein HEVER [Hevea brasiliensis] SWISS-PROT:Q39963; contains Pfam domain, PF01680: SOR/SNZ family" 4 10 24 At2g40780 hypothetical protein 4 10 25 At2g40830 "zinc finger (C3HC4-type RING finger) family protein contains Pfam domain, PF00097: Zinc finger, C3HC4 type (RING finger)" 4 11 1 At2g40950 bZIP transcription factor family protein similar to AtbZIP transcription factor GI:17065880 from [Arabidopsis thaliana]; contains Pfam profile: bZIP transcription factor PF00170 4 11 2 At2g41000 DNAJ heat shock N-terminal domain-containing protein similar to SP|O75190 DnaJ homolog subfamily B member 6 (Heat shock protein J2) Homo sapiens; contains Pfam profile PF00226 DnaJ domain 4 11 3 At2g41160 ubiquitin-associated (UBA)/TS-N domain-containing protein contains Pfam profile PF00627: UBA/TS-N domain 4 11 4 At2g41220 "glutamate synthase, chloroplast (GLU2) / ferredoxin-dependent glutamate synthase (Fd-GOGAT 2) identical to SP|Q9T0P4 Ferredoxin-dependent glutamate synthase 2, chloroplast precursor (EC 1.4.7.1) (Fd-GOGAT 2) {Arabidopsis thaliana}" 4 11 5 At2g41400 expressed protein 4 11 6 At2g41430 dehydration-induced protein (ERD15) identical to dehydration-induced protein ERD15 GI:710626 from [Arabidopsis thaliana] 4 11 7 At2g44000 expressed protein 4 11 8 At2g44060 late embryogenesis abundant family protein / LEA family protein similar to ethylene-responsive late embryogenesis-like protein [Lycopersicon esculentum] GI:1684830; contains Pfam profile PF03168: Late embryogenesis abundant protein 4 11 9 At2g44190 expressed protein contains Pfam profile: PF04484 family of unknown function (DUF566) 4 11 10 At2g44240 expressed protein contains Pfam profile PF03080: Arabidopsis proteins of unknown function 4 11 11 At2g44420 protein N-terminal asparagine amidohydrolase family protein similar to Protein N-terminal asparagine amidohydrolase (EC 3.5.1.-) (Protein NH2-terminal asparagine deamidase) (NTN-amidase) (PNAD) (Protein NH2- terminal asparagine amidohydrolase) (PNAA) (Swiss-Prot:Q64311) [Mus musculus] 4 11 12 At2g44480 glycosyl hydrolase family 1 protein contains Pfam PF00232 : Glycosyl hydrolase family 1 domain; TIGRFAM TIGR01233: 6-phospho-beta-galactosidase; similar to amygdalin hydrolase isoform AH I precursor (GI:16757966) [Prunus serotina] 4 11 13 At2g44620 "acyl carrier protein, mitochondrial / ACP / NADH-ubiquinone oxidoreductase 9.6 kDa subunit identical to SP|P53665 Acyl carrier protein, mitochondrial precursor (ACP) (NADH-ubiquinone oxidoreductase 9.6 kDa subunit) (MtACP-1) {Arabidopsis thaliana}; identical to cDNA acyl carrier protein precursor GI:468265" 4 11 14 At2g44680 "casein kinase II beta chain, putative similar to casein kinase II beta-3 chain (CK II) [Arabidopsis thaliana] SWISS-PROT:O81275" 4 11 15 At2g47350 "PAPA-1-like family protein / zinc finger (HIT type) family protein contains Pfam domains, PF04795: PAPA-1-like conserved region and PF04438: HIT zinc finger" 4 11 16 At2g47410 "transducin family protein / WD-40 repeat family protein contains 5 WD-40 repeats (PF00400); similar to WDR protein, form B (GI:14970593) [Mus musculus]" 4 11 17 At2g47560 "zinc finger (C3HC4-type RING finger) family protein contains Pfam domain, PF00097: Zinc finger, C3HC4 type (RING finger)" 4 11 18 At2g47620 "SWIRM domain-containing protein / DNA-binding family protein contains similarity to SWI/SNF complex 170 KDa subunit [Homo sapiens] gi|1549241|gb|AAC50694; contains Pfam domains PF04433: SWIRM domain, PF00249: Myb-like DNA-binding domain" 4 11 19 At2g47790 transducin family protein / WD-40 repeat family protein similar to WD-repeat protein 5 (SP:Q9UGP9) [Homo sapiens]; The first 3 exons are identical to that of GB:AJ224957. This gene appears to be a truncated version of that in GB:AJ224957; contains 4 WD-40 repeats (PF00400) 4 11 20 At2g47830 "cation efflux family protein / metal tolerance protein, putative (MTPc1) member of the cation diffusion facilitator (CDF) family, or cation efflux (CE) family, PMID:11500563" 4 11 21 At2g47970 "NPL4 family protein contains Pfam domain, PF05021: NPL4 family" 4 11 22 At2g48010 serine/threonine protein kinase (RFK3) identical to receptor-like serine/threonine kinase [Arabidopsis thaliana] gi|2465927|gb|AAC50045 4 11 23 At3g03340 LUC7 N_terminus domain-containing protein contains Pfam domain PF03194: LUC7 N_terminus 4 11 24 At3g03405 hypothetical protein temporary automated functional assignment 4 11 25 At3g03580 pentatricopeptide (PPR) repeat-containing protein contains INTERPRO:IPR002885 PPR repeats 4 12 1 At3g03640 glycosyl hydrolase family 1 protein contains Pfam PF00232 : Glycosyl hydrolase family 1 domain; TIGRFAM TIGR01233: 6-phospho-beta-galactosidase; identical to beta-glucosidase GB:AAC31962 [Arabidopsis thaliana]; similar to thioglucoside glucohydrolase (GI:984052) [Arabidopsis thaliana] 4 12 2 At3g03790 ankyrin repeat family protein / regulator of chromosome condensation (RCC1) family protein similar to hect domain and RLD 2 GB:NP_004658 [Homo sapiens]; contains Pfam PF00415: Regulator of chromosome condensation (RCC1); contains Pfam PF00023: Ankyrin repeat; similar to rjs (GI:3414809) [Mus musculus]; similar to HERC2 (GI:4079809) [Homo sapiens] 4 12 3 At3g03847 auxin-responsive family protein similar to auxin-inducible SAUR (Small Auxin Up RNAs) (GI:3043536) [Raphanus sativus] 4 12 4 At3g03970 expressed protein 4 12 5 At3g04020 expressed protein 4 12 6 At3g06547 expressed protein 4 12 7 At3g06590 expressed protein 4 12 8 At3g06680 60S ribosomal protein L29 (RPL29B) similar to 60S ribosomal protein L29 GB:P25886 from (Rattus norvegicus) 4 12 9 At3g06730 thioredoxin family protein contains Pfam profile: PF00085 Thioredoxin 4 12 10 At3g06920 pentatricopeptide (PPR) repeat-containing protein low similarity to fertility restorer [Petunia x hybrida] GI:22128587; contains Pfam profile PF01535: PPR repeat 4 12 11 At3g06960 expressed protein 4 12 12 At3g07130 serine/threonine protein phosphatase family protein contains similarity to purple acid phosphatase [Arabidopsis thaliana] gi|20257489|gb|AAM15914 4 12 13 At3g07180 "GPI transamidase component PIG-S-related similar to GPI transamidase component PIG-S (Phosphatidylinositol-glycan biosynthesis, class S protein) (Swiss-Prot:Q96S52) [Homo sapiens]" 4 12 14 At3g10220 tubulin folding cofactor B identical to tubulin folding cofactor B GI:20514259 from [Arabidopsis thaliana]; identical to cDNA tubulin folding cofactor B GI:20514258 4 12 15 At3g10260 reticulon family protein weak similarity to Nogo-C protein [Rattus norvegicus] GI:6822251; contains Pfam profile PF02453: Reticulon; identical to cDNA GI:32331854 4 12 16 At3g10405 expressed protein 4 12 17 At3g10450 serine carboxypeptidase S10 family protein similar to glucose acyltransferase GB:AAD01263 [Solanum berthaultii]; also similar to serine carboxypeptidase I GB:P37890 [Oryza sativa] 4 12 18 At3g10580 myb family transcription factor contains PFAM profile: PF00249 myb-like DNA binding domain; similar to transcription factor MYBS1 (GI:24850303) [Oryza sativa (japonica cultivar-group)]; similar to I-box binding factor (GI:6688529) [Lycopersicon esculentum] 4 12 19 At3g10620 "diadenosine 5',5'''-P1,P4-tetraphosphate hydrolase, putative similar to diadenosine 5',5'''-P1,P4-tetraphosphate hydrolase from [Lupinus angustifolius] GI:1888557, [Hordeum vulgare subsp. vulgare] GI:2564253; contains Pfam profile PF00293: NUDIX domain" 4 12 20 At3g10760 myb family transcription factor contains Pfam profile: PF00249 myb-like DNA-binding domain 4 12 21 At3g10800 bZIP transcription factor family protein contains Pfam profile: PF00170 bZIP transcription factor; contains similarity to TGACG-sequence specific DNA-binding protein TGA-1B (HSBF) GB:P14233 [Nicotiana tabacum] 4 12 22 At3g13227 serine-rich protein-related contains some similarity to serine-rich proteins 4 12 23 At3g13235 ubiquitin family protein contains INTERPRO:IPR000626 ubiquitin domain 4 12 24 At3g13400 multi-copper oxidase type I family protein similar to pollen-specific BP10 protein [SP|Q00624][Brassica napus]; contains Pfam profile: PF00394 Multicopper oxidase 4 12 25 At3g13445 transcription initiation factor IID-1 (TFIID-1) / TATA-box factor 1 / TATA sequence-binding protein 1 (TBP1) identical to Swiss-Prot:P28147 transcription initiation factor TFIID-1 (TATA-box factor 1)(TATA sequence-binding protein 1) (TBP-1) [Arabidopsis thaliana] 4 13 1 At3g13600 calmodulin-binding family protein contains Pfam profile PF00612: IQ calmodulin-binding motif 4 13 2 At3g13660 disease resistance response protein-related/ dirigent protein-related similar to dirigent protein [Forsythia x intermedia] gi|6694695|gb|AAF25358; similar to disease resistance response protein 206-d [Pisum sativum] gi|508844|gb|AAB18669 4 13 3 At3g13770 pentatricopeptide (PPR) repeat-containing protein contains Pfam profile PF01535: PPR repeat 4 13 4 At3g13800 metallo-beta-lactamase family protein similar to Metal Dependent Hydrolase GB:AAD18619 from [Chlamydophila pneumoniae] 4 13 5 At3g16300 "integral membrane family protein contains TIGRFAM TIGR01569 : plant integral membrane protein TIGR01569; contains Pfam PF04535 : Domain of unknown function (DUF588); At2g38480, At1g45222 and others share this domain structure; distantly related to GP|14030504 salicylic acid-induced fragment 1 protein {Gossypium hirsutum}" 4 13 6 At3g16360 "phosphotransfer family protein similar to two-component phosphorelay mediators ATHP1 (GI:4156241), ATHP3 (GI:4156245) [Arabidopsis thaliana], histidine-containing phosphotransfer protein [Catharanthus roseus] GI:13774348" 4 13 7 At3g16520 UDP-glucoronosyl/UDP-glucosyl transferase family protein contains Pfam profile: PF00201 UDP-glucoronosyl and UDP-glucosyl transferase 4 13 8 At3g16560 protein phosphatase 2C-related / PP2C-related contains protein phosphatase 2C domain 4 13 9 At3g16730 expressed protein ; expression supported by MPSS 4 13 10 At3g16770 AP2 domain-containing protein RAP2.3 (RAP2.3) identical to GI:2281631 [Arabidopsis thaliana]; identical to cDNA EBP GI:2190330 4 13 11 At3g16920 glycoside hydrolase family 19 protein similar to class I chitinase GI:7798670 from [Arabis microphylla] 4 13 12 At3g16980 "DNA-directed RNA polymerase II, putative similar to SP|P36958 DNA-directed RNA polymerase II 15.1 kDa polypeptide (EC 2.7.7.6) {Drosophila melanogaster}; contains Pfam profile PF02150: RNA polymerases M/15 Kd subunit" 4 13 13 At3g19590 "WD-40 repeat family protein / mitotic checkpoint protein, putative contains 5 WD-40 repeats (PF00400) (1 weak); similar to testis mitotic checkpoint protein BUB3 (GB:AAC28439,SP|O43684)[Homo sapiens]" 4 13 14 At3g19650 cyclin-related contains weak similarity to Cylicin I (Multiple-band polypeptide I) (Swiss-Prot:P35662) [Bos taurus] 4 13 15 At3g19830 C2 domain-containing protein low similarity to GLUT4 vesicle protein [Rattus norvegicus] GI:4193489; contains Pfam profile PF00168: C2 domain 4 13 16 At3g19890 F-box family protein contains F-box domain Pfam:PF00646 4 13 17 At3g20050 "T-complex protein 1 alpha subunit / TCP-1-alpha / chaperonin (CCT1) identical to SWISS-PROT:P28769- T-complex protein 1, alpha subunit (TCP-1-alpha) [Arabidopsis thaliana]" 4 13 18 At3g20080 cytochrome P450 family protein similar to Cytochrome P450 93A1 (SP:Q42798) {Glycine max}; contains Pfam profile: PF00067 cytochrome P450 4 13 19 At3g20250 "pumilio/Puf RNA-binding domain-containing protein contains Pfam profile: PF00806 Pumilio-family RNA binding domains (aka PUM-HD, Pumilio homology domain) (8 copies at C-terminus)" 4 13 20 At3g20280 PHD finger family protein contains Pfam profile: PF00628 PHD-finger 4 13 21 At3g23020 pentatricopeptide (PPR) repeat-containing protein low similarity to leaf protein [Ipomoea nil] GI:3107905; contains Pfam profile PF01535: PPR repeat 4 13 22 At3g23060 "zinc finger (C3HC4-type RING finger) family protein contains Pfam profile: PF00097 zinc finger, C3HC4 type (RING finger)" 4 13 23 At3g23220 "ethylene-responsive element-binding protein, putative similar to SP:O80337,ERFI_ARATH Ethylene responsive element binding factor 1 (AtERF1). {Arabidopsis thaliana}; similar to SP:O04681, PTI5_LYCES Pathogenesis-related genes transcriptional activator PTI5. [Tomato] {Lycopersicon esculentum} >GP|2213783|U89256; similar to EREBP-2 GB:BAA07324 from [Nicotiana tabacum]" 4 13 24 At3g23270 regulator of chromosome condensation (RCC1) family protein contains Pfam domain PF00415: Regulator of chromosome condensation (RCC1); similar to zinc finger protein (GI:15811367) [Arabidopsis thaliana]; similar to chromosome condensation regulator protein (GI:22770461) [Cicer arietinum] 4 13 25 At3g23420 F-box family protein-related contains TIGRFAM TIGR01640: F-box protein interaction domain 4 14 1 At3g23490 cyanate lyase family contains Pfam profile: PF02560 cyanate lyase C-terminal domain 4 14 2 At3g23680 F-box family protein-related contains TIGRFAM TIGR01640: F-box protein interaction domain 4 14 3 At3g23730 "xyloglucan:xyloglucosyl transferase, putative / xyloglucan endotransglycosylase, putative / endo-xyloglucan transferase, putative similar to xyloglucan endotransglycosylase-related protein GI:1244760 from [Arabidopsis thaliana]" 4 14 4 At3g26550 DC1 domain-containing protein contains Pfam profile PF03107: DC1 domain 4 14 5 At3g26610 "polygalacturonase, putative / pectinase, putative similar to polygalacturonase (PG1) GI:5669846, (PG2) GI:5669848 [Glycine max]; contains PF00295: Glycosyl hydrolases family 28 (polygalacturonases)" 4 14 6 At3g26710 expressed protein 4 14 7 At3g26760 short-chain dehydrogenase/reductase (SDR) family protein similar to sex determination protein tasselseed 2 SP:P50160 from [Zea mays] 4 14 8 At3g26900 shikimate kinase family protein similar to shikimate kinase precursor GB:CAA45121 [Lycopersicon esculentum]; contains Pfam shikimate kinase domain PF01202 4 14 9 At3g26940 "protein kinase family protein contains protein kinase domain, Pfam:PF00069" 4 14 10 At3g27120 "spastin ATPase, putative similar to SWISS-PROT:Q9QYY8 spastin (Fragment) [Mus musculus]; contains Pfam domain, PF00004: ATPase, AAA family" 4 14 11 At3g27180 expressed protein 4 14 12 At3g30290 "cytochrome P450 family protein similar to Cytochrome P450 85 (SP:Q43147) {Lycopersicon esculentum}; similar to GB:C71417 from [Arabidopsis thaliana] (Nature 391 (6666), 485-488 (1998))" 4 14 13 At3g30360 hypothetical protein 4 14 14 At3g30560 hypothetical protein 4 14 15 At3g30645 hypothetical protein 4 14 16 At3g30820 hypothetical protein 4 14 17 At3g30848 hypothetical protein contains similarity to hypothetical proteins 4 14 18 At3g31950 hypothetical protein 4 14 19 At3g32040 "geranylgeranyl pyrophosphate synthase, putative / GGPP synthetase, putative / farnesyltranstransferase, putative identical to gi:413730; similar to GB:P34802 from [Arabidopsis thaliana] (Plant Physiol. 104 (4), 1469-1470 (1994))" 4 14 20 At3g44805 hypothetical protein 4 14 21 At3g44860 S-adenosyl-L-methionine:carboxyl methyltransferase family protein similar to defense-related protein cjs1 [Brassica carinata][GI:14009292][Mol Plant Pathol (2001) 2(3):159-169] 4 14 22 At3g45030 "40S ribosomal protein S20 (RPS20A) 40S ribsomomal proteinS20, Arabidopsis thaliana, pir:T12992" 4 14 23 At3g45080 "sulfotransferase family protein similar to steroid sulfotransferase 3 [Brassica napus] GI:3420008, steroid sulfotransferase 1 [Brassica napus] GI:3420004; contains Pfam profile PF00685: Sulfotransferase domain" 4 14 24 At3g45240 "protein kinase family protein contains eukaryotic protein kinase domain, INTERPRO:IPR000719" 4 14 25 At3g45320 hypothetical protein 4 15 1 At3g45500 hypothetical protein 4 15 2 At3g45560 "zinc finger (C3HC4-type RING finger) family protein contains Zinc finger, C3HC4 type (RING finger) signature, PROSITE:PS00518" 4 15 3 At3g48380 expressed protein 4 15 4 At3g48430 "zinc finger (C2H2 type) family protein / transcription factor jumonji (jmj) family protein contains Pfam domains PF02375: jmjN domain, PF02373: jmjC domain and PF00096: Zinc finger, C2H2 type" 4 15 5 At3g48610 phosphoesterase family protein low similarity to SP|P95246 Phospholipase C 2 precursor (EC 3.1.4.3) {Mycobacterium tuberculosis}; contains Pfam profile PF04185: Phosphoesterase family 4 15 6 At3g48675 hypothetical protein 4 15 7 At3g48850 "mitochondrial phosphate transporter, putative similar to mitochondrial phosphate transporter GI:3318617 from [Arabidopsis thaliana]" 4 15 8 At3g48890 cytochrome b5 domain-containing protein similar to SP|O00264 Membrane associated progesterone receptor component (mPR) {Homo sapiens}; contains Pfam profile PF00173: Heme/Steroid binding domain 4 15 9 At3g49055 hypothetical protein 4 15 10 At3g49120 "peroxidase, putative identical to peroxidase [Arabidopsis thaliana] gi|405611|emb|CAA50677" 4 15 11 At3g51960 bZIP family transcription factor contains Pfam profile: PF00170 bZIP transcription factor 4 15 12 At3g52000 serine carboxypeptidase S10 family protein similar to SP|P52711 Serine carboxypeptidase II-3 precursor (EC 3.4.16.6) Hordeum vulgare; contains Pfam profile PF0450 serine carboxypeptidase 4 15 13 At3g52120 "SWAP (Suppressor-of-White-APricot)/surp domain-containing protein / D111/G-patch domain-containing protein contains Pfam profiles PF01585: G-patch domain, PF01805: Surp module" 4 15 14 At3g52170 expressed protein 4 15 15 At3g52330 "F-box family protein-related contains weak hit to TIGRFAM TIGR01640 : F-box protein interaction domain; similar to F-box protein family, AtFBX8 (GI:20197464) [Arabidopsis thaliana]" 4 15 16 At3g52380 "33 kDa ribonucleoprotein, chloroplast, putative / RNA-binding protein cp33, putative similar to chloroplast RNA-binding protein (cp33) GB:BAA06523 (Arabidopsis thaliana) (Plant Mol. Biol. 27 (3), 529-539 (1995)); contains InterPro entry IPR000504: RNA-binding region RNP-1 (RNA recognition motif) (RRM)" 4 15 17 At3g52550 hypothetical protein 4 15 18 At3g52590 "ubiquitin extension protein 1 (UBQ1) / 60S ribosomal protein L40 (RPL40B) identical to GI:166929, GI:166930" 4 15 19 At3g55120 chalcone-flavanone isomerase / chalcone isomerase (CHI) identical to SP|P41088 4 15 20 At3g55160 expressed protein 4 15 21 At3g55360 "3-oxo-5-alpha-steroid 4-dehydrogenase family protein / steroid 5-alpha-reductase family protein similar to synaptic glycoprotein SC2 spliced variant from Homo sapiens [EMBL:AF038958], SC2 from Rattus sp. [gi:256994]; contains Pfam 3-oxo-5-alpha-steroid 4-dehydrogenase domain PF02544" 4 15 22 At3g55400 methionyl-tRNA synthetase / methionine--tRNA ligase / MetRS (cpMetRS) identical to methionyl-tRNA synthetase MEtRS [Arabidopsis thaliana] GI:2266985 4 15 23 At3g55590 "GDP-mannose pyrophosphorylase, putative strong similarity to GDP-mannose pyrophosphorylase from Arabidopsis thaliana [GI:3598958], Pichia angusta [GI:7331158]; contains Pfam profile PF00483 Nucleotidyl transferase" 4 15 24 At3g55640 mitochondrial substrate carrier family protein contains Pfam profile: PF00153 mitochondrial carrier protein 4 15 25 At3g55800 "sedoheptulose-1,7-bisphosphatase, chloroplast / sedoheptulose-bisphosphatase identical to SP|P46283 Sedoheptulose-1,7-bisphosphatase, chloroplast precursor (EC 3.1.3.37) (Sedoheptulose-bisphosphatase) (SBPASE) (SED(1,7)P2ASE) {Arabidopsis thaliana}" 4 16 1 At3g55850 amidohydrolase family protein weak similarity to SP|Q06555 Exoenzymes regulatory protein aepA precursor {Erwinia carotovora}; contains Pfam profile PF01979: Amidohydrolase family 4 16 2 At3g58720 "zinc finger (C3HC4-type RING finger) family protein contains Pfam profile: PF00097 zinc finger, C3HC4 type (RING finger)" 4 16 3 At3g58780 agamous-like MADS box protein AGL1 / shatterproof 1 (AGL1) (SHP1) identical to SP|P29381 Agamous-like MADS box protein AGL1 (Protein Shatterproof 1) {Arabidopsis thaliana} 4 16 4 At3g58960 F-box family protein contains F-box domain Pfam:PF00646 4 16 5 At3g59020 importin beta-2 subunit family protein similar to D-Importin 7/RanBP7 [Drosophila melanogaster] GI:7542336; contains Pfam profile PF03810: Importin-beta N-terminal domain 4 16 6 At3g59170 F-box family protein contains F-box domain Pfam:PF00646 4 16 7 At3g59230 F-box family protein contains F-box domain Pfam:PF00646 4 16 8 At3g59370 "expressed protein hypothetical protein F12F1.4 - Arabidopsis thaliana, EMBL:AC002131" 4 16 9 At3g59410 "protein kinase family protein low similarity to GCN2 eIF2alpha kinase [Mus musculus] GI:6066585; contains Pfam profiles PF03129: Anticodon binding domain, PF00069: Protein kinase domain" 4 16 10 At3g62100 "auxin-responsive protein, putative similar to SP|O24410 Auxin-responsive protein IAA20 (Indoleacetic acid-induced protein 20) {Arabidopsis thaliana}; contains Pfam profile: PF02309: AUX/IAA family" 4 16 11 At3g62160 "transferase family protein low similarity to Taxus cuspidata transferases: 10-deacetylbaccatin III-10-O-acetyl transferase GI:6746554, taxadienol acetyl transferase GI:6978038, 2-debenzoyl-7,13-diacetylbaccatin III-2-O-benzoyl transferase GI:11559716; contains Pfam profile PF02458 transferase family" 4 16 12 At3g62340 WRKY family transcription factor 4 16 13 At3g62400 "expressed protein cytochrome c oxidase subunit 5c - Oryza sativa, EMBL:AB027123" 4 16 14 At3g62570 "DNAJ heat shock N-terminal domain-containing protein contains Pfam profiles PF00226: DnaJ domain, PF00515: TPR Domain" 4 16 15 At3g62630 expressed protein 4 16 16 At3g62770 transport protein-related weak similarity to Gsa12p [Pichia pastoris] GI:18307769; contains 1 WD-40 repeat (PF00400); putative proteins - different species 4 16 17 At3g62830 NAD-dependent epimerase/dehydratase family protein similar to UDP-glucuronic acid decarboxylase Uxs1p from Filobasidiella neoformans GI:14318327; contains Pfam profile PF01370 NAD dependent epimerase/dehydratase family; contains non-consensus CA donor splice site at exon 1 and TA acceptor splice site at exon 2 4 16 18 At4g01690 protoporphyrinogen oxidase (PPOX) identical to SP|P55826 4 16 19 At4g01740 "DC1 domain-containing protein similar to T15B16.6 similar to A. thaliana CHP-rich hypothetical proteins encoded by T10M13, GenBank accession number AF001308" 4 16 20 At4g01900 P II nitrogen sensing protein (GLB I) identical to P II nitrogen sensing protein GLB I (GI:7268574) [Arabidopsis thaliana]; similar to nitrogen regulatory protein P-II (PII signal transducing protein) (SP:O30794) {Nostoc punctiforme} 4 16 21 At4g01930 DC1 domain-containing protein contains Pfam profile PF03107: DC1 domain 4 16 22 At4g02075 "zinc finger (C3HC4-type RING finger) family protein contains InterPro Entry IPR001841 Zn-finger, RING" 4 16 23 At4g02130 "glycosyl transferase family 8 protein low similarity to lgtC of Neisseria sp., GenBank accession number U14554, U65788; contains Pfam glycosyl transferase family 8 domain PF01501" 4 16 24 At4g02270 "pollen Ole e 1 allergen and extensin family protein contains Pfam domain, PF01190: Pollen proteins Ole e I family" 4 16 25 At4g02330 pectinesterase family protein contains Pfam profile: PF01095 pectinesterase 4 17 1 At4g05270 ubiquitin family protein contains INTERPRO:IPR000626 ubiquitin domain 4 17 2 At4g05320 polyubiquitin (UBQ10) (SEN3) senescence-associated protein; identical to GI:870791 4 17 3 At4g05520 "calcium-binding EF hand family protein similar to EH-domain containing protein 1 from {Mus musculus} SP|Q9WVK4, {Homo sapiens} SP|Q9H4M9, receptor-mediated endocytosis 1 from [Caenorhabditis elegans] GI:13487775, GI:13487777, GI:13487779; contains INTERPRO:IPR002048 calcium-binding EF-hand domain" 4 17 4 At4g05570 hypothetical protein 4 17 5 At4g06603 expressed protein 4 17 6 At4g06728 hypothetical protein 4 17 7 At4g07470 hypothetical protein 4 17 8 At4g07515 expressed protein 4 17 9 At4g10680 transcription factor IIB (TFIIB) family protein contains Pfam profile: PF00382 transcription factor TFIIB repeat 4 17 10 At4g10740 F-box family protein contains Pfam PF00646: F-box domain; contains TIGRFAM TIGR01640: F-box protein interaction domain 4 17 11 At4g10895 Expressed protein 4 17 12 At4g10930 expressed protein 4 17 13 At4g11080 high mobility group (HMG1/2) family protein similar to SP|P40618 High mobility group protein HMG2A {Gallus gallus}; contains Pfam profile PF00505: HMG (high mobility group) box 4 17 14 At4g11140 "AP2 domain-containing transcription factor, putative DNA-binding protein Pti6 - Lycopersicon esculentum, PID:g2213785" 4 17 15 At4g11300 expressed protein 4 17 16 At4g11360 zinc finger (C3HC4-type RING finger) family protein (RHA1b) identical to RING-H2 finger protein RHA1b [Arabidopsis thaliana] GI:3790567 4 17 17 At4g14100 expressed protein 4 17 18 At4g14130 "xyloglucan:xyloglucosyl transferase, putative / xyloglucan endotransglycosylase, putative / endo-xyloglucan transferase, putative (XTR7) almost identical to xyloglucan endotransglycosylase-related protein XTR7 GI:1244760 from [Arabidopsis thaliana], one amino acid difference" 4 17 19 At4g14240 expressed protein contains Pfam profile PF01595: Domain of unknown function 4 17 20 At4g14300 "heterogeneous nuclear ribonucleoprotein, putative / hnRNP, putative " 4 17 21 At4g14390 ankyrin repeat family protein contains Pfam profile: PF00023 ankyrin repeat 4 17 22 At4g14450 expressed protein 4 17 23 At4g14605 mitochondrial transcription termination factor-related / mTERF-related contains Pfam profile PF02536: mTERF 4 17 24 At4g14660 "RNA polymerase Rpb7 N-terminal domain-containing protein similar to SP|P52433 DNA-directed RNA polymerase II 19 kDa polypeptide (EC 2.7.7.6) (RPB7) {Rattus norvegicus}; contains Pfam profile PF03876: RNA polymerase Rpb7, N-terminal domain" 4 17 25 At4g17020 "transcription factor-related contains weak similarity to Swiss-Prot:Q92759 TFIIH basal transcription factor complex p52 subunit (Basic transcription factor 52 kDa subunit, BTF2-p52, General transcription factor IIH polypeptide 4) [Homo sapiens]" 4 18 1 At4g17060 expressed protein 4 18 2 At4g17220 expressed protein 4 18 3 At4g17270 Mo25 family protein similar to MO25 protein (early mouse development protein family) [Mouse] SWISS-PROT:Q06138 4 18 4 At4g17483 palmitoyl protein thioesterase family protein 4 18 5 At4g17520 "nuclear RNA-binding protein, putative similar to nuclear RNA binding protein GI:6492264 from [Arabidopsis thaliana]" 4 18 6 At4g17660 "protein kinase, putative similar to protein kinase [Lophopyrum elongatum] gi|13022177|gb|AAK11674" 4 18 7 At4g17710 homeobox-leucine zipper family protein / lipid-binding START domain-containing protein similar to HD-Zip homeo domain OCL4 protein (GI:8920425) [Zea mays]; contains Pfam PF00046: Homeobox domain and Pfam PF01852: START domain 4 18 8 At4g20310 peptidase M50 family protein / sterol-regulatory element binding protein (SREBP) site 2 protease family protein weak similarity to SP|O54862 Membrane-bound transcription factor site 2 protease (EC 3.4.24.-) (Sterol-regulatory element-binding proteins intramembrane protease){Cricetulus griseus}; contains Pfam profile PF02163: Sterol-regulatory element binding protein (SREBP) site 2 protease 4 18 9 At4g20370 twin sister of FT protein (TSF) / TFL1 like protein identical to SP|Q9S7R5 TWIN SISTER of FT protein (TFL1 like protein) {Arabidopsis thaliana}; contains Pfam profile PF01161: Phosphatidylethanolamine-binding protein 4 18 10 At4g20530 "receptor-like protein kinase-related kinase like proteins, Arabidopsis contains Pfam profile: PF01657 Domain of unknown function that is usually associated with protein kinase domain Pfam:PF00069" 4 18 11 At4g20710 hypothetical protein 4 18 12 At4g20880 ethylene-responsive nuclear protein / ethylene-regulated nuclear protein (ERT2) identical to ethylene-regulated nuclear protein [Arabidopsis thaliana] gi|2765442|emb|CAA75349 4 18 13 At4g20940 "leucine-rich repeat family protein contains leucine rich-repeat (LRR) domains Pfam:PF00560, INTERPRO:IPR001611; contains similarity to leucine-rich repeat receptor-like protein kinase INRPK1 [Ipomoea nil] gi|14495542|gb|AAB36558" 4 18 14 At4g21110 G10 family protein contains Pfam profile: PF01125 G10 protein 4 18 15 At4g21160 zinc finger and C2 domain protein (ZAC) identical to zinc finger and C2 domain protein GI:9957238 from [Arabidopsis thaliana] 4 18 16 At4g23750 "AP2 domain-containing transcription factor, putative DNA-binding protein Pti6 - Lycopersicon esculentum,PID:g2213785" 4 18 17 At4g23800 high mobility group (HMG1/2) family protein similar to HMG2B [Homo sapiens] GI:32335; contains Pfam profile PF00505: HMG (high mobility group) box 4 18 18 At4g23940 "FtsH protease, putative contains similarity to zinc dependent protease GI:7650138 from [Arabidopsis thaliana]" 4 18 19 At4g24000 "cellulose synthase family protein similar to cellulose synthase from Gossypium hirsutum [gi:1706956], cellulose synthase-5 from Zea mays [gi:9622882]" 4 18 20 At4g24160 "hydrolase, alpha/beta fold family protein contains Pfam profile PF00561: hydrolase, alpha/beta fold family" 4 18 21 At4g24210 "F-box family protein / SLEEPY1 protein contains Pfam PF00646: F-box domain; similar to F-box protein Fbx8 (GI:6164735) [Homo sapiens]; identified as SLEEPY1 in McGinnis, et al, Plant Cell (2003) 15: 1120-1130." 4 18 22 At4g24330 "expressed protein hypothetical protein - Caenorhabditis elegans,PID:e1350884" 4 18 23 At4g24390 F-box family protein (FBX14) similar to transport inhibitor response 1 protein GI:8777429 from [Arabidopsis thaliana] 4 18 24 At4g26960 expressed protein 4 18 25 At4g27010 expressed protein ; expression supported by MPSS 4 19 1 At4g27170 2S seed storage protein 4 / 2S albumin storage protein / NWMU2-2S albumin 4 identical to SP|P15460 4 19 2 At4g27250 "dihydroflavonol 4-reductase family / dihydrokaempferol 4-reductase family similar to dihydrokaempferol 4-reductase, Ipomoea purpurea (GI:4239849), Medicago sativa, PIR2:S61416" 4 19 3 At4g27420 "ABC transporter family protein D.melanogaster P element CaSpeR-1 gene (white protein),PID:g870996" 4 19 4 At4g27470 "zinc finger (C3HC4-type RING finger) family protein contains Pfam profile: PF00097 zinc finger, C3HC4 type (RING finger)" 4 19 5 At4g27610 expressed protein 4 19 6 At4g27630 expressed protein 4 19 7 At4g30250 AAA-type ATPase family protein contains Pfam profile: ATPase family PF00004 4 19 8 At4g30310 "ribitol kinase, putative similar to ribitol kinase [Klebsiella pneumoniae] gi|2905643|gb|AAC26495" 4 19 9 At4g30470 "cinnamoyl-CoA reductase-related similar to cinnamoyl-CoA reductase from Pinus taeda [GI:17978649], Saccharum officinarum [GI:3341511]" 4 19 10 At4g30510 transport protein-related weak similarity to Gsa12p [Pichia pastoris] GI:18307769; contains 1 WD-40 repeat (PF00400); similar to several hypothetical proteins 4 19 11 At4g30670 expressed protein 4 19 12 At4g30720 "expressed protein hypothetical protein - Synechocystis sp. (strain PCC 6803),PIR2:S76076" 4 19 13 At4g30850 "expressed protein contains Pfam domain, PF03006: Uncharacterised protein family (Hly-III / UPF0073)" 4 19 14 At4g30900 expressed protein 4 19 15 At4g33430 brassinosteroid insensitive 1-associated receptor kinase 1 (BAK1) / somatic embryogenesis receptor-like kinase 3 (SERK3) identical to SP|Q94F62 BRASSINOSTEROID INSENSITIVE 1-associated receptor kinase 1 precursor (EC 2.7.1.37) (BRI1-associated receptor kinase 1) (Somatic embryogenesis receptor-like kinase 3) {Arabidopsis thaliana}; contains Pfam domains PF00560: Leucine Rich Repeat and PF00069: Protein kinase domain; identical to cDNA somatic embryogenesis receptor-like kinase 3 (SERK3) GI:14573458 4 19 16 At4g33490 "nucellin protein, putative similar to nucellin GI:2290202 from [Hordeum vulgare]" 4 19 17 At4g33630 expressed protein 4 19 18 At4g33670 "L-galactose dehydrogenase (L-GalDH) identical to L-galactose dehydrogenase [Arabidopsis thaliana] GI:16555790; similar to L-fucose dehydrogenase [Pseudomonas sp.] GI:829054; contains Pfam profile PF00248: oxidoreductase, aldo/keto reductase family" 4 19 19 At4g33850 glycosyl hydrolase family 10 protein similar to tapetum specific protein GI:3885492 from [Zea mays] 4 19 20 At4g33890 expressed protein 4 19 21 At4g34030 "methylcrotonyl-CoA carboxylase beta chain, mitochondrial / 3-methylcrotonyl-CoA carboxylase 2 (MCCB) identical to SP|Q9LDD8 Methylcrotonyl-CoA carboxylase beta chain, mitochondrial precursor (EC 6.4.1.4) (3-Methylcrotonyl-CoA carboxylase 2) (MCCase beta subunit) (3-methylcrotonyl-CoA:carbon dioxide ligase beta subunit) {Arabidopsis thaliana}; contains Pfam profile: PF01039 carboxyl transferase domain" 4 19 22 At4g34070 expressed protein 4 19 23 AT5G57480 PC-1 4 19 24 3XSSC PC-1 4 19 25 AT1G29930 PC-1 4 20 1 3XSSC PC-1 4 20 2 AT3G44150 PC-1 4 20 3 3XSSC PC-1 4 20 4 AT4G00810 PC-1 4 20 5 3XSSC PC-1 4 20 6 At4g36630 expressed protein 4 20 7 At4g36680 pentatricopeptide (PPR) repeat-containing protein low similarity to fertility restorer [Petunia x hybrida] GI:22128587; contains Pfam profile PF01535: PPR repeat; identical to cDNA membrane-associated salt-inducible protein like GI:2632060 4 20 8 At4g36820 "hypothetical protein contains Pfam domain, PF04678: Protein of unknown function, DUF607" 4 20 9 At4g36870 BEL1-like homeobox 2 protein (BLH2) 4 20 10 At4g37050 "patatin, putative similar to patatin-like latex allergen [Hevea brasiliensis][PMID:10589016]; contains patatin domain PF01734" 4 20 11 At4g37110 expressed protein 4 20 12 At4g37270 "cadmium/zinc-transporting ATPase, putative (HMA1) contains InterPro accession IPR001757: ATPase, E1-E2 type; identical to Potential cadmium/zinc-transporting ATPase HMA1 (EC 3.6.3.3) (EC 3.6.3.5) (Swiss-Prot:Q9M3H5) [Arabidopsis thaliana]; identical to cDNA putative transcription factor (MYB73) mRNA, partial cds GI:3941503" 4 20 13 At4g37320 cytochrome P450 family protein 4 20 14 At4g39920 tubulin folding cofactor C / Porcino (POR) identical to tubulin-folding cofactor C (Porcino; POR) GI:20514261 from [Arabidopsis thaliana]; identical to cDNA tubulin folding cofactor C GI:20514260 4 20 15 At4g39960 "DNAJ heat shock family protein similar to SP|Q9S5A3 Chaperone protein dnaJ {Listeria monocytogenes}; contains Pfam profiles PF00226 DnaJ domain, PF01556 DnaJ C terminal region, PF00684 DnaJ central domain (4 repeats)" 4 20 16 At4g32730 myb family transcription factor identical to PC-MYB1 GI:5678826 from [Arabidopsis thaliana]; 4 20 17 At5g01050 "laccase family protein / diphenol oxidase family protein similar to laccase [Pinus taeda][GI:13661201], lac110 laccase, Populus trichocarpa, EMBL:PTY13773" 4 20 18 At5g01220 UDP-sulfoquinovose:DAG sulfoquinovosyltransferase / sulfolipid synthase (SQD2) identical to GI:20302857 4 20 19 At5g01240 "amino acid permease, putative strong similarity to AUX1 GI:1531758 from [Arabidopsis thaliana]; contains Pfam profile PF01490: Transmembrane amino acid transporter protein" 4 20 20 At5g01410 "stress-responsive protein, putative similar to ethylene-inducible protein HEVER [Hevea brasiliensis] SWISS-PROT:Q39963" 4 20 21 At5g01470 expressed protein 4 20 22 At5g04170 calcium-binding EF hand family protein low similarity to peflin [Homo sapiens] GI:6015440; contains INTERPRO:IPR002048 calcium-binding EF-hand domain 4 20 23 At5g04220 C2 domain-containing protein (sytC) GC donor splice site at exon 3; similar to Ca2+-dependent lipid-binding protein (CLB1) GI:2789434 from [Lycopersicon esculentum] 4 20 24 At5g04410 no apical meristem (NAM) family protein contains Pfam PF02365: No apical meristem (NAM) protein; supporting cDNA gi|6456750|gb|AF201456.1|AF201456 4 20 25 At5g04460 expressed protein 4 21 1 At5g04650 "hypothetical protein predicted protein, Arabidopsi thaliana" 4 21 2 At5g04710 "aspartyl aminopeptidase, putative similar to SP|Q9ULA0 Aspartyl aminopeptidase (EC 3.4.11.21) {Homo sapiens}; contains Pfam profile PF02127: Aminopeptidase I zinc metalloprotease (M18)" 4 21 3 At5g04850 "SNF7 family protein contains Pfam domain, PF03357: SNF7 family" 4 21 4 At5g04900 short-chain dehydrogenase/reductase (SDR) family protein contains INTERPRO family IPR002198 Short-chain dehydrogenase/reductase (SDR) superfamily 4 21 5 At5g07460 "peptide methionine sulfoxide reductase, putative similar to peptide methionine sulfoxide reductase (msr) [Arabidopsis thaliana] GI:4884033; contains Pfam profile PF01625: Peptide methionine sulfoxide reductase" 4 21 6 At5g07510 glycine-rich protein (GRP14) oleosin; glycine-rich protein 14 (GRP14) PMID:11431566; PIR:JQ1063 4 21 7 At5g07680 no apical meristem (NAM) family protein contains Pfam PF02365 : No apical meristem (NAM) protein; similar to cup-shaped cotyledon CUC2 (GI:1944132) [Arabidopsis thaliana] 4 21 8 At5g07760 "formin homology 2 domain-containing protein / FH2 domain-containing protein contains formin homology 2 domain, Pfam:PF02181" 4 21 9 At5g07940 expressed protein 4 21 10 At5g08000 "glycosyl hydrolase family protein 17 similar to beta-1,3-glucanase GI:15150341 from [Camellia sinensis]; C-terminal homology only" 4 21 11 At5g08160 "serine/threonine protein kinase, putative identical to serine/threonine protein kinase [Arabidopsis thaliana] gi|2109293|gb|AAB69123" 4 21 12 At5g08190 "TATA-binding protein-associated phosphoprotein Dr1 protein, putative similar to Dr1 protein homolog (SP:P49592) [Arabidopsis thaliana]; similar to TATA-binding protein-associated phosphoprotein (Down-regulator of transcription 1) (DR1 protein) (SP:Q01658) [Homo sapiens]; contains Pfam PF00808 : Histone-like transcription factor (CBF/NF-Y) and archaeal histone" 4 21 13 At5g11240 transducin family protein / WD-40 repeat family protein contains 3 WD-40 repeats (PF00400); similar to uncharacterized protein KIAA0007 (GI:1663708) {Homo sapiens} 1.2e-11 4 21 14 At5g11300 "cyclin, putative (CYC3b) similar to cyclin 3a [Arabidopsis thaliana] GI:509425; contains Pfam profiles PF00134: Cyclin, N-terminal domain, PF02984: Cyclin, C-terminal domain; identical to cDNA cyc3b mRNA for cyclin 3b protein GI:728520" 4 21 15 At5g11470 bromo-adjacent homology (BAH) domain-containing protein contains Pfam profile PF01426: BAH domain 4 21 16 At5g11530 embryonic flower 1 (EMF1) identical to embryonic flower 1 [Arabidopsis thaliana] GI:15430697 4 21 17 At5g11690 "mitochondrial import inner membrane translocase subunit Tim17, putative similar to SP|Q9SP35 Mitochondrial import inner membrane translocase subunit TIM17 {Arabidopsis thaliana}; contains Pfam profile PF02466: Mitochondrial import inner membrane translocase subunit Tim17" 4 21 18 At5g11750 ribosomal protein L19 family protein similar to plastid ribosomal protein L19 precursor [Spinacia oleracea] gi|7582403|gb|AAF64312 4 21 19 At5g11930 "glutaredoxin family protein contains INTERPRO Domain IPR002109, Glutaredoxin (thioltransferase)" 4 21 20 At5g11990 "proline-rich family protein contains proline-rich extensin domains, INTERPRO:IPR002965" 4 21 21 At5g15130 "WRKY family transcription factor contains Pfam profile: PF03106 WRKY DNA -binding domain; TMV response-related gene product, Nicotiana tabacum, EMBL:AB024510" 4 21 22 At5g15190 expressed protein 4 21 23 At5g15340 pentatricopeptide (PPR) repeat-containing protein contains INTERPRO:IPR002885 PPR repeats 4 21 24 At5g15410 cyclic nucleotide-regulated ion channel / cyclic nucleotide-gated channel (CNGC2) identical to cyclic nucleotide-gated cation channel GI:3894399 from [Arabidopsis thaliana] 4 21 25 At5g15550 "transducin family protein / WD-40 repeat family protein similar to YTM1 - Homo sapiens, EMBL:AF242546; contains Pfam PF00400: WD domain, G-beta repeat (7 copies,1 weak);" 4 22 1 At5g15610 "proteasome family protein contains Pfam domain, PF01399: PCI domain" 4 22 2 At5g15770 "GCN5-related N-acetyltransferase (GNAT) family protein similar to SP|O93806 Glucosamine-phosphate N-acetyltransferase (EC 2.3.1.4) (Phosphoglucosamine transacetylase) (Phosphoglucosamine acetylase) {Candida albicans}; contains Pfam profile PF00583: acetyltransferase, GNAT family" 4 22 3 At5g15802 expressed protein 4 22 4 At5g18450 "AP2 domain-containing transcription factor, putative DREB2A, Arabidopsis thaliana, EMBL:AB007790" 4 22 5 At5g18500 "protein kinase family protein contains protein kinase domain, Pfam:PF00069" 4 22 6 At5g18630 lipase class 3 family protein low similarity to Triacylglycerol Acylhydrolase (E.C.3.1.1.3) [Rhizomucor miehei] GI:230348; contains Pfam profile PF01764: Lipase 4 22 7 At5g18680 "F-box family protein / tubby family protein similar to phosphodiesterase (GI:467578) [Mus musculus]; similar to Chain A, C-Terminal Domain Of Mouse Brain Tubby Protein (GI:6730158) [Mus musculus]; contains Pfam PF00646: F-box domain and Pfam PF01167: Tub family" 4 22 8 At5g18830 squamosa promoter-binding protein-like 7 (SPL7) identical to squamosa promoter binding protein-like 7 [Arabidopsis thaliana] GI:5931635; contains Pfam profile PF03110: SBP domain 4 22 9 At5g18890 inosine-uridine preferring nucleoside hydrolase family protein contains Pfam profile PF01156: Inosine-uridine preferring nucleoside hydrolase 4 22 10 At5g19030 "RNA recognition motif (RRM)-containing protein low similarity to Cold-inducible RNA-binding protein (Glycine-rich RNA-binding protein CIRP) from {Homo sapiens} SP|Q14011, {Rattus norvegicus} SP|Q61413,{Xenopus laevis} SP|O93235; contains InterPro entry IPR000504: RNA-binding region RNP-1 (RNA recognition motif) (RRM)" 4 22 11 At5g19080 "zinc finger (C3HC4-type RING finger) family protein contains Pfam domain, PF00097: Zinc finger, C3HC4 type (RING finger)" 4 22 12 At5g22430 expressed protein 4 22 13 At5g22490 condensation domain-containing protein contains Pfam profile PF00668: Condensation domain 4 22 14 At5g22640 MORN (Membrane Occupation and Recognition Nexus) repeat-containing protein contains Pfam profile PF02493: MORN repeat 4 22 15 At5g22680 hypothetical protein 4 22 16 At5g22850 aspartyl protease family protein contains Pfam profile: PF00026 eukaryotic aspartyl protease 4 22 17 At5g22890 "zinc finger (C2H2 type) family protein contains Pfam domain PF00096: Zinc finger, C2H2 type" 4 22 18 At5g23070 "thymidine kinase, putative similar to thymidine kinase [Oryza sativa] SWISS-PROT:O81263" 4 22 19 At5g23100 "expressed protein contains Pfam profile PF04759: Protein of unknown function, DUF617" 4 22 20 At5g25770 expressed protein 4 22 21 At5g25830 "zinc finger (GATA type) family protein GATA transcription factor, Arabidopsis thaliana, PIR:T05288" 4 22 22 At5g26000 glycosyl hydrolase family 1 protein contains Pfam PF00232 : Glycosyl hydrolase family 1 domain; TIGRFAM TIGR01233: 6-phospho-beta-galactosidase; identical to Myrosinase precursor (Sinigrinase) (SP:P37702) [Arabidopsis thaliana] 4 22 23 At5g26040 histone deacetylase family protein (HDA2) identical to HDA2 [Arabidopsis thaliana] GI:21105771; similar to SP|Q96DB2 Histone deacetylase 11 (HD11) {Homo sapiens}; contains Pfam profile PF00850: Histone deacetylase family 4 22 24 At5g26200 mitochondrial substrate carrier family protein contains Pfam profile: PF00153 mitochondrial carrier protein 4 22 25 At5g26260 meprin and TRAF homology domain-containing protein / MATH domain-containing protein similar to ubiquitin-specific protease 12 [Arabidopsis thaliana] GI:11993471; contains Pfam profile PF00917: MATH domain 4 23 1 At5g26717 hypothetical protein 4 23 2 At5g26720 expressed protein 4 23 3 At5g33280 "chloride channel-like (CLC) protein, putative similar to CLC-c, At5g49890 [Arabidopsis thaliana] and chloride channel protein ClC-1 - Nicotiana tabacum, PIR:T02939" 4 23 4 At5g33340 "aspartyl protease family protein contains Pfam domain, PF00026: eukaryotic aspartyl protease" 4 23 5 At5g34780 "dehydrogenase E1 component family protein similar to SP|P50136 2-oxoisovalerate dehydrogenase alpha subunit, mitochondrial precursor (EC 1.2.4.4) (Branched-chain alpha-keto acid dehydrogenase component alpha chain) {Mus musculus}; contains Pfam profile PF00676: Dehydrogenase E1 component" 4 23 6 At5g34860 hypothetical protein 4 23 7 At5g35020 hypothetical protein 4 23 8 At5g35100 "peptidyl-prolyl cis-trans isomerase cyclophilin-type family protein contains Pfam domain, PF00160: peptidyl-prolyl cis-trans isomerase, cyclophilin-type" 4 23 9 At5g35300 hypothetical protein 4 23 10 At5g35360 "acetyl-CoA carboxylase, biotin carboxylase subunit (CAC2) identical to acetyl-CoA carboxylase, biotin carboxylase subunit (CAC2) [Arabidopsis thaliana] GI:1905876" 4 23 11 At5g38490 hypothetical protein contains Pfam profile PF03754: Domain of unknown function (DUF313) 4 23 12 At5g38550 jacalin lectin family protein similar to myrosinase-binding protein homolog [Arabidopsis thaliana] GI:2997767; contains Pfam profile PF01419 jacalin-like lectin domain 4 23 13 At5g38710 "proline oxidase, putative / osmotic stress-responsive proline dehydrogenase, putative similar to proline oxidase, mitochondrial precursor (Osmotic stress- induced proline dehydrogenase) [Arabidopsis thaliana] SWISS-PROT:P92983" 4 23 14 At5g38770 hypothetical protein 4 23 15 At5g38950 germin-like protein-related contains some similarity to germin-like protein GI:5869975 from [Triticum aestivum] 4 23 16 At5g38990 "protein kinase family protein contains protein kinase domain, Pfam:PF00069" 4 23 17 At5g39190 germin-like protein (GER2) identical to germin-like protein subfamily 1 member 20 [SP|P92996] 4 23 18 At5g39240 expressed protein ; expression supported by MPSS 4 23 19 At5g42080 "GTP-binding protein / phragmoplastin, putative strong similarity to GTP-binding protein [Arabidopsis thaliana] GI:807577, phragmoplastin SDL5A [Glycine max] GI:1218004; contains Pfam profiles PF01031: Dynamin central region, PF00350: Dynamin family" 4 23 20 At5g42110 expressed protein 4 23 21 At5g42280 DC1 domain-containing protein contains Pfam profile PF03107: DC1 domain 4 23 22 At5g42330 expressed protein 4 23 23 At5g42510 disease resistance-responsive family protein similar to disease resistance response protein 206-d [Pisum sativum] gi|508844|gb|AAB18669 4 23 24 At5g42580 cytochrome P450 family protein similar to Cytochrome P450 93A1 (SP:Q42798) {Glycine max}; similar to flavone synthase II (GI:5081817) [Gerbera hybrida]. 4 23 25 At5g42750 expressed protein 4 24 1 At5g42790 20S proteasome alpha subunit F1 (PAF1) (gb|AAC32062.1) 4 24 2 At5g45340 cytochrome P450 family protein similar to SP|Q42569|C901_ARATH Cytochrome P450 90A1 (SP:Q42569) [Arabidopsis thaliana]; contains Pfam profile: PF00067: Cytochrome P450 4 24 3 At5g45370 nodulin-related / integral membrane family protein contains Pfam profile:PF00892 integral membrane protein DUF6 4 24 4 At5g45540 "expressed protein contains Pfam domain, PF04578: Protein of unknown function, DUF594; expression supported by MPSS" 4 24 5 At5g45590 expressed protein 4 24 6 At5g45740 hypothetical protein 4 24 7 At5g45775 60S ribosomal protein L11 (RPL11D) 4 24 8 At5g45940 MutT/nudix family protein contains Pfam profile PF00293: NUDIX domain 4 24 9 At5g46000 jacalin lectin family protein similar to myrosinase-binding protein homolog [Arabidopsis thaliana] GI:2997767; contains Pfam profile PF01419 jacalin-like lectin domain 4 24 10 At5g48570 "peptidyl-prolyl cis-trans isomerase, putative / FK506-binding protein, putative similar to rof1 [Arabidopsis thaliana] GI:1373396" 4 24 11 At5g48620 "disease resistance protein (CC-NBS-LRR class), putative domain signature CC-NBS-LRR exists, suggestive of a disease resistance protein." 4 24 12 At5g48750 "auxin-responsive protein, putative similar to auxin-induced protein AIR12 GI:11357190 [Arabidopsis thaliana];" 4 24 13 At5g48810 cytochrome b5 identical to cytochrome b5 [Arabidopsis thaliana] GI:4240122; strong similarity to Cytochrome B5 SP:P49098 from [Nicotiana tabacum] 4 24 14 At5g48970 mitochondrial substrate carrier family protein contains Pfam profile: PF00153 mitochondrial carrier protein 4 24 15 At5g49020 protein arginine N-methyltransferase family protein similar to protein arginine methyltransferase [Mus musculus] GI:5257221 4 24 16 At5g49200 WD-40 repeat family protein / zfwd4 protein (ZFWD4) contains 6 WD-40 repeats (PF00400); contains Zinc finger C-x8-C-x5-C-x3-H type domain (PF00642); identical to zfwd4 protein (GI:12057170) [Arabidopsis thaliana] 4 24 17 At5g49240 two-component responsive regulator family protein / response regulator family protein contains Pfam profile: PF00072 response regulator receiver domain; contains similarity to two-component response regulator proteins 4 24 18 At5g51960 expressed protein 4 24 19 At5g52020 AP2 domain-containing protein low similarity to DREB1B GI:3738226 from [Arabidopsis thaliana]; contains Pfam profile PF00847: AP2 domain 4 24 20 At5g52180 expressed protein 4 24 21 At5g52230 expressed protein 4 24 22 At5g52410 expressed protein 4 24 23 At5g52470 fibrillarin 1 (FBR1) (FIB1) (SKIP7) identical to fibrillarin 1 GI:9965653 from [Arabidopsis thaliana]; C-terminus identical to SKP1 interacting partner 7 GI:10716959 from [Arabidopsis thaliana]; contains Pfam domain PF01269: Fibrillarin 4 24 24 At5g52630 pentatricopeptide (PPR) repeat-containing protein contains Pfam profile PF01535: PPR repeat 4 24 25 At5g52670 heavy-metal-associated domain-containing protein contains Pfam profile PF00403: Heavy-metal-associated domain 4 25 1 At5g55350 "membrane bound O-acyl transferase (MBOAT) family protein / wax synthase-related contains similarity to wax synthase wax synthase - Simmondsia chinensis, PID:g5020219 similar to wax synthase [gi:5020219] from Simmondsia chinensis" 4 25 2 At5g55410 protease inhibitor/seed storage/lipid transfer protein (LTP) family protein contains Pfam profile: PF00234 protease inhibitor/seed storage/LTP family 4 25 3 At5g55570 expressed protein 4 25 4 At5g55610 expressed protein 4 25 5 At5g55780 DC1 domain-containing protein contains Pfam profile PF03107: DC1 domain 4 25 6 At5g55840 pentatricopeptide (PPR) repeat-containing protein low similarity to fertility restorer [Petunia x hybrida] GI:22128587; contains Pfam profile PF01535: PPR repeat 4 25 7 At5g56000 "heat shock protein 81-4 (HSP81-4) nearly identical to heat shock protein hsp81.4 [Arabidopsis thaliana] GI:1906828; contains Pfam profiles PF02518: ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain protein, PF00183: Hsp90 protein" 4 25 8 At5g56060 hypothetical protein 4 25 9 At5g58640 selenoprotein-related contains weak similarity to Selenoprotein W (Swiss-Prot:P49904) [Rattus norvegicus] 4 25 10 At5g58700 phosphoinositide-specific phospholipase C family protein contains Pfam profile: PF00388 phosphatidylinositol-specific phospholipase C 4 25 11 At5g58860 cytochrome P450 86A1 (CYP86) (CYP86A1) / CYPLXVI / P450-dependent fatty acid omega-hydroxylase identical to Cytochrome P450 86A1 (CYPLXVI) (P450-dependent fatty acid omega-hydroxylase) (SP:P48422) [Arabidopsis thaliana] 4 25 12 At5g58920 expressed protein 4 25 13 At5g59060 expressed protein ; expression supported by MPSS 4 25 14 At5g59110 "subtilisin-like serine protease-related similar to prepro-cucumisin GI:807698 from [Cucumis melo], subtilisin-like protease C1 [Glycine max] GI:13325079" 4 25 15 At5g59270 lectin protein kinase family protein contains Pfam domains PF00139: Legume lectins beta domain and PF00069: Protein kinase domain 4 25 16 At5g59320 lipid transfer protein 3 (LTP3) identical to lipid transfer protein 3 from Arabidopsis thaliana [gi:8571921]; contains Pfam protease inhibitor/seed storage/LTP family domain PF00234 4 25 17 At5g61950 "ubiquitin carboxyl-terminal hydrolase-related contains Pfam profiles PF00443: Ubiquitin carboxyl-terminal hydrolase, PF04780: Protein of unknown function (DUF629), PF04781: Protein of unknown function (DUF627)" 4 25 18 At5g62000 "transcriptional factor B3 family protein / auxin-responsive factor, putative (ARF1) contains Pfam profile: PF02362 B3 DNA binding domain; identical to cDNA ARF1 (auxin response factor) binding protein GI:2245393" 4 25 19 At5g62165 MADS-box protein (AGL42) 4 25 20 At5g62220 exostosin family protein contains Pfam profile: PF03016 Exostosin family 4 25 21 At5g62400 hypothetical protein 4 25 22 At5g62470 myb family transcription factor (MYB96) contains Pfam profile: PF00249 myb-like DNA-binding domain 4 25 23 At5g62600 transportin-SR-related contains weak similarity to transportin-SR (GI:5052414) [Homo sapiens] 4 25 24 At5g62660 F-box family protein contains Pfam profile: PF00646 F-box domain 4 25 25 At5g65207 expressed protein 4 26 1 At5g65240 leucine-rich repeat family protein / protein kinase family protein contains Pfam domains PF00560: Leucine Rich Repeat and PF00069: Protein kinase domain 4 26 2 At5g65420 "cyclin, putative similar to cyclin D2.1 protein [Nicotiana tabacum] GI:4160298; contains Pfam profiles PF00134: Cyclin, N-terminal domain, PF02984: Cyclin, C-terminal domain" 4 26 3 At5g65460 kinesin motor protein-related contains similarity to kinesin heavy chain 4 26 4 At5g65630 DNA-binding bromodomain-containing protein similar to 5.9 kb fsh membrane protein [Drosophila melanogaster] GI:157455; contains Pfam profile PF00439: Bromodomain 4 26 5 At5g65683 "zinc finger (C3HC4-type RING finger) family protein contains Pfam profiles PF00097: Zinc finger, C3HC4 type (RING finger), PF00092: von Willebrand factor type A domain" 4 26 6 At5g65840 expressed protein 4 26 7 At5g65900 "DEAD/DEAH box helicase, putative contains Pfam profiles PF00270:DEAD/DEAH box helicase and PF00271: Helicase conserved C-terminal domain; identical to cDNA RH27 helicase, partial GI:4033334" 4 26 8 ath-MIR159a miRNA gene Arabidopsis thaliana miR159a stem-loop 4 26 9 ath-MIR169d miRNA gene Arabidopsis thaliana miR169d stem-loop 4 26 10 3xSSC 3xSSC 4 26 11 3xSSC 3xSSC 4 26 12 3xSSC 3xSSC 4 26 13 3xSSC 3xSSC 4 26 14 3xSSC 3xSSC 4 26 15 3xSSC 3xSSC 4 26 16 At1g34770 MAGE-8 antigen-related contains weak similarity to Swiss-Prot:P43361 melanoma-associated antigen 8 (MAGE-8 antigen) [Homo sapiens] 4 26 17 At1g35030 hypothetical protein 4 26 18 At1g35260 "Bet v I allergen family protein similar to Csf-2 [Cucumis sativus][GI:5762258][J Am Soc Hortic Sci 124, 136-139 (1999)] contains Pfam profile PF00407: Pathogenesis-related protein Bet v I family" 4 26 19 At1g35340 ATP-dependent protease La (LON) domain-containing protein contains Pfam profile PF02190: ATP-dependent protease La (LON) domain 4 26 20 At1g35540 "transcriptional factor B3 family protein / auxin-responsive factor AUX/IAA-related contains Pfam profiles: PF02362 B3 DNA binding domain, PF02309: AUX/IAA family" 4 26 21 At1g35614 hypothetical protein 4 26 22 At1g35830 VQ motif-containing protein contains PF05678: VQ motif 4 26 23 At1g35910 "trehalose-6-phosphate phosphatase, putative similar to trehalose-6-phosphate phosphatase (AtTPPB) [Arabidopsis thaliana] GI:2944180; contains Pfam profile PF02358: Trehalose-phosphatase" 4 26 24 Blank Blank 4 26 25 Blank Blank 5 1 1 At5g49910 heat shock protein 70 / HSP70 (HSC70-7) identical to heat shock protein 70 [Arabidopsis thaliana] GI:6746592 5 1 2 At3g18780 actin 2 (ACT2) identical to SP|Q96292 Actin 2 {Arabidopsis thaliana}; nearly identical to SP|Q96293 Actin 8 [Arabidopsis thaliana] GI:1669387 and to At1g49240 5 1 3 Alien5 Control: Stratagene Spotreport Alien Oligo 5 1 4 At1g64740 tubulin alpha-1 chain (TUA1) nearly identical to SP|P11139 Tubulin alpha-1 chain {Arabidopsis thaliana} 5 1 5 atc07 Randomly generated negative control 5 1 6 Alien1 Control: Stratagene Spotreport Alien Oligo 5 1 7 At3g18780 actin 2 (ACT2) identical to SP|Q96292 Actin 2 {Arabidopsis thaliana}; nearly identical to SP|Q96293 Actin 8 [Arabidopsis thaliana] GI:1669387 and to At1g49240 5 1 8 atc03 Randomly generated negative control 5 1 9 At1g01050 "inorganic pyrophosphatase, putative [soluble] / pyrophosphate phospho-hydrolase, putative / PPase, putative strong similarity to SP|Q43187 Soluble inorganic pyrophosphatase (EC 3.6.1.1) (Pyrophosphate phospho- hydrolase) (PPase) {Solanum tuberosum}; contains Pfam profile PF00719: inorganic pyrophosphatase" 5 1 10 At1g01100 60S acidic ribosomal protein P1 (RPP1A) similar to 60S ACIDIC RIBOSOMAL PROTEIN P1 GB:O23095 from [Arabidopsis thaliana] 5 1 11 At1g01230 ORMDL family protein contains Pfam domain PF04061: ORMDL family 5 1 12 At1g01300 "aspartyl protease family protein contains Pfam domain, PF00026: eukaryotic aspartyl protease" 5 1 13 At1g01480 1-aminocyclopropane-1-carboxylate synthase 2 / ACC synthase 2 (ACS2) (ACC1) identical to 1-aminocyclopropane-1-carboxylate synthase SP|Q06402 [GI:166578] from [Arabidopsis thaliana] 5 1 14 At1g01540 "protein kinase family protein contains protein kinase domain, Pfam:PF00069; contains serine/threonine protein kinase domain, INTERPRO:IPR002290" 5 1 15 At1g01710 "acyl-CoA thioesterase family protein contains Pfam profiles: PF02551 acyl-CoA thioesterase, PF00027 cyclic nucleotide-binding domain" 5 1 16 At1g01760 adenosine-deaminase family / editase family similar to double-stranded RNA-specific editase GB:AAF69673 GI:7770275 from [Danio rerio] 5 1 17 At1g04350 "2-oxoglutarate-dependent dioxygenase, putative Similar to Arabidopsis 2A6 (gb|X83096) and to tomato ethylene synthesis regulatory protein E8 (SP|P10967); EST gb|T76913 comes from this gene" 5 1 18 At1g04410 "malate dehydrogenase, cytosolic, putative strong similarity to malate dehydrogenase from Mesembryanthemum crystallinum [SP|O24047], Medicago sativa [SP|O48905], Prunus persica [GI:15982948]; contains InterPro entry IPR001236: Lactate/malate dehydrogenase" 5 1 19 At1g04570 integral membrane transporter family protein contains 8 transmembrane domains; contains Pfam PF03092: BT1 family; contains TIGRFAMS TIGR00788: folate/biopterin transporter; similar to hypothetical protein GB:AAD38263 5 1 20 At1g04610 flavin-containing monooxygenase / FMO (YUCCA3) identical to gi:16555356 5 1 21 At1g04790 "zinc finger (C3HC4-type RING finger) family protein contains Pfam profile: PF00097 zinc finger, C3HC4 type (RING finger)" 5 1 22 At1g04850 ubiquitin-associated (UBA)/TS-N domain-containing protein weak similarity to SP|P45974 Ubiquitin carboxyl-terminal hydrolase 5 (EC 3.1.2.15) {Homo sapiens}; contains Pfam profile PF00627: UBA/TS-N domain 5 1 23 At1g04985 expressed protein 5 1 24 At1g05040 hypothetical protein 5 1 25 At1g07650 "leucine-rich repeat transmembrane protein kinase, putative similar to GB:AAC50043 from [Arabidopsis thaliana] (Plant Mol. Biol. 37 (4), 587-596 (1998))" 5 2 1 At1g07700 thioredoxin family protein low similarity to thioredoxin [Gallus gallus] GI:212766; contains Pfam profile: PF00085 Thioredoxin 5 2 2 At1g07795 expressed protein 5 2 3 At1g07840 leucine zipper factor-related similar to charged amino acid rich leucine zipper factor-1 (GI:12061569) {Mus musculus} 5 2 4 At1g07960 thioredoxin family protein low similarity to protein disulfide isomerase 4 [Giardia intestinalis] GI:13489047; contains Pfam profile PF00085: Thioredoxin 5 2 5 At1g08000 zinc finger (GATA type) family protein similar to PIR:T05288 from [Arabidopsis thaliana] 5 2 6 At1g08130 "DNA ligase / polydeoxyribonucleotide synthase [ATP] identical to SP|Q42572 DNA ligase (EC 6.5.1.1) (Polydeoxyribonucleotide synthase [ATP]) {Arabidopsis thaliana}; contains Pfam profiles: PF01068 ATP dependent DNA ligase domain, PF04679 ATP dependent DNA ligase C terminal region, PF04675 DNA ligase N terminus" 5 2 7 At1g08180 expressed protein 5 2 8 At1g10760 starch excess protein (SEX1) identical to SEX1 [Arabidopsis thaliana] GI:12044358; supporting cDNA gi|12044357|gb|AF312027.1|AF312027 5 2 9 At1g10820 expressed protein similar to hypothetical protein GB:AAB71979 5 2 10 At1g10980 expressed protein ; expression supported by MPSS 5 2 11 At1g11040 DNAJ chaperone C-terminal domain-containing protein contains Pfam profile PF01556: DnaJ C terminal region 5 2 12 At1g11210 expressed protein contains similarity to cotton fiber expressed protein 1 [Gossypium hirsutum] gi|3264828|gb|AAC33276 5 2 13 At1g11270 F-box family protein contains F-box domain Pfam:PF00646 5 2 14 At1g11400 expressed protein 5 2 15 At1g11460 nodulin MtN21 family protein similar to MtN21 [Medicago truncatula] GI:2598575; contains Pfam profile PF00892: Integral membrane protein 5 2 16 At1g14240 nucleoside phosphatase family protein / GDA1/CD39 family protein low similarity to nod factor binding lectin-nucleotide phosphohydrolase [Dolichos biflorus] GI:4868375; contains Pfam profile PF01150: GDA1/CD39 (nucleoside phosphatase) family 5 2 17 At1g14280 "phytochrome kinase, putative contains similarity to Swiss-Prot:Q9SWI1 phytochrome kinase substrate 1 [Arabidopsis thaliana]" 5 2 18 At1g14430 glyoxal oxidase-related low similarity to glyoxal oxidase precursor (glx1) [Phanerochaete chrysosporium] GI:1050302 5 2 19 At1g14490 DNA-binding protein-related contains similarity to DNA-binding proteins 5 2 20 At1g14660 "sodium proton exchanger, putative (NHX8) similar to Na+ H+ antiporter GB:CAA69925 GI:1655702 from (Xenopus laevis); similar to putative Na+/H+ antiporter SOS1 [Arabidopsis thaliana] gi|8515714|gb|AAF76139; Member of The Monovalent Cation:Proton Antiporter (CPA1) Family, PMID:11500563" 5 2 21 At1g14687 zinc finger homeobox family protein / ZF-HD homeobox family protein 5 2 22 At1g14820 SEC14 cytosolic factor family protein / phosphoglyceride transfer family protein contains Pfam PF00650 : CRAL/TRIO domain; similar to phosphatidylinositol/phosphatidylcholine transfer protein SP:P24280 [Saccharomyces cerevisiae (Baker's yeast)] 5 2 23 At1g14870 "expressed protein similar to PGPS/D12 [Petunia x hybrida] GI:4105794; contains Pfam profile PF04749: Protein of unknown function, DUF614" 5 2 24 At1g17550 protein phosphatase 2C-related / PP2C-related similar to protein phosphatase 2C GI:3242077 from (Arabidopsis thaliana) 5 2 25 At1g17615 "disease resistance protein (TIR-NBS class), putative domain signature TIR exists, suggestive of a disease resistance protein." 5 3 1 At1g17770 "SET domain-containing protein (SUVH7) contains Pfam profiles: PF05033: Pre-SET motif, PF00856 SET domain; identical to cDNA SUVH7 (SUVH7) GI:13517754" 5 3 2 At1g17810 major intrinsic family protein / MIP family protein contains Pfam profile: MIP PF00230 5 3 3 At1g17970 "zinc finger (C3HC4-type RING finger) family protein similar to Pfam domain, PF00097: Zinc finger, C3HC4 type (RING finger)" 5 3 4 At1g18030 "protein phosphatase 2C, putative / PP2C, putative contains similarity to protein phosphatase 2C GI:3777604 from [Rattus norvegicus]" 5 3 5 At1g18220 hypothetical protein 5 3 6 At1g18290 hypothetical protein 5 3 7 At1g21150 mitochondrial transcription termination factor family protein / mTERF family protein weak similarity to mtDBP protein [Paracentrotus lividus] GI:4584695; contains Pfam profile PF02536: mTERF 5 3 8 At1g21230 "wall-associated kinase, putative similar to wall-associated kinase 1 [Arabidopsis thaliana] GI:3549626; expressed in leaves and stems & induced by salicylic acid or INA (PMID:10380805)" 5 3 9 At1g21390 expressed protein 5 3 10 At1g21450 scarecrow-like transcription factor 1 (SCL1) identical to scarecrow-like 1 GB:AAF21043 GI:6644390 from [Arabidopsis thaliana] 5 3 11 At1g21640 "ATP-NAD kinase family protein contains similarity to NAD kinase [Homo sapiens] gi|20070086|gb|AAM01195; contains Pfam domain, PF01513: ATP-NAD kinase" 5 3 12 At1g21690 "replication factor C 37 kDa, putative Similar to SWISS-PROT:P35249 activator 1 37 kDa subunit (Replication factor C 37 kDa subunit, A1 37 kDa subunit, RF-C 37 kDa subunit, RFC37) [Homo sapiens]; contains Pfam domain, PF00004: ATPase, AAA family" 5 3 13 At1g21860 multi-copper oxidase type I family protein similar to pollen-specific BP10 protein [SP|Q00624][Brassica napus]; contains Pfam profile: PF00394 Multicopper oxidase 5 3 14 At1g21910 AP2 domain-containing transcription factor family protein similar to TINY GB:CAA64359 GI:1246403 from [Arabidopsis thaliana] 5 3 15 At1g24480 hypothetical protein 5 3 16 At1g24530 transducin family protein / WD-40 repeat family protein similar to Vegetatible incompatibility protein HET-E-1 (SP:Q00808) {Podospora anserina}; contains 7 WD-40 repeats (PF00400) 5 3 17 At1g24851 hypothetical protein 5 3 18 At1g25210 UDP-3-O-acyl N-acetylglycosamine deacetylase family protein contains Pfam domain PF03331: UDP-3-O-acyl N-acetylglycosamine deacetylase 5 3 19 At1g25360 pentatricopeptide (PPR) repeat-containing protein contains INTERPRO:IPR002885 PPR repeats 5 3 20 At1g25410 adenylate isopentenyltransferase 6 / adenylate dimethylallyltransferase / cytokinin synthase (IPT6) identical to adenylate isopentenyltransferase (IPT6) [Arabidopsis thaliana] GI:14279064 5 3 21 At1g25570 "leucine-rich repeat protein-related contains leucine rich-repeat (LRR) domains Pfam:PF00560, INTERPRO:IPR001611; contains some similarity to light repressible receptor protein kinase [Arabidopsis thaliana] gi|1321686|emb|CAA66376" 5 3 22 At1g26100 "cytochrome B561 family protein contains Pfam domain, PF03188: Cytochrome b561" 5 3 23 At1g29000 heavy-metal-associated domain-containing protein similar to farnesylated protein ATFP3 [GI:4097547]; contains Pfam profile PF00403: Heavy-metal-associated domain 5 3 24 At1g29040 expressed protein 5 3 25 At1g29240 expressed protein contains Pfam profile: PF05097 protein of unknown function (DUF688) 5 4 1 At1g29300 expressed protein contains Pfam profile PF04859: Plant protein of unknown function (DUF641 5 4 2 At1g29440 auxin-responsive family protein similar to auxin-induced protein 6B (SP:P33083) [Glycine max] 5 4 3 At1g29500 "auxin-responsive protein, putative similar to auxin-induced protein 6B (SP:P33083) [Glycine max]" 5 4 4 At1g29690 expressed protein 5 4 5 At1g29750 "leucine-rich repeat transmembrane protein kinase, putative / serine/threonine kinase, putative (RKF1) similar to receptor-like serine/threonine kinase GI:2465923 from [Arabidopsis thaliana]; identical to cDNA receptor-like serine/threonine kinase (RKF1) GI:2465922" 5 4 6 At1g32585 VQ motif-containing protein-related contains weak similarity to Pfma:PF05678 VQ motif 5 4 7 At1g32660 F-box family protein contains Pfam profile: PF00646 F-box domain 5 4 8 At1g32830 "hypothetical protein similar to At2g04970, At2g15200, At2g14140, At3g30450, At4g03990, At5g34895, At3g47270, At2g02200" 5 4 9 At1g32900 "starch synthase, putative similar to starch synthase SP:Q42857 from [Ipomoea batatas]" 5 4 10 At1g33055 expressed protein 5 4 11 At1g33100 MATE efflux family protein similar to ripening regulated protein DDTFR18 [Lycopersicon esculentum] GI:12231296; contains Pfam profile PF01554: Uncharacterized membrane protein family 5 4 12 At1g33320 "cystathionine gamma-synthase, chloroplast, putative / O-succinylhomoserine (Thiol)-lyase, putative strong similarity to SP|P55217 Cystathionine gamma-synthase, chloroplast precursor (EC 4.2.99.9) (CGS) (O-succinylhomoserine (Thiol)-lyase) {Arabidopsis thaliana}; contains Pfam profile PF01053: Cys/Met metabolism PLP-dependent enzyme" 5 4 13 At1g33400 tetratricopeptide repeat (TPR)-containing protein contains Pfam profile PF00515 TPR Domain 5 4 14 At1g42550 expressed protein 5 4 15 At1g42710 hypothetical protein 5 4 16 At1g43230 hypothetical protein 5 4 17 At1g43415 hypothetical protein 5 4 18 At1g43700 VirE2-interacting protein (VIP1) identical to VirE2-interacting protein VIP1 GB:AAF37279 GI:7258340 from [Arabidopsis thaliana] 5 4 19 At1g43770 "PHD finger family protein contains Pfam domain, PF00628: PHD-finger" 5 4 20 At1g43995 hypothetical protein similar to putative non-LTR retroelement reverse transcriptase GI:4544460 from [Arabidopsis thaliana] 5 4 21 At1g44080 "F-box protein-related / C-type lectin-related contains F-box domain Pfam:PF00646, PF00059: Lectin C-type domain" 5 4 22 At1g49150 hypothetical protein 5 4 23 At1g49210 "zinc finger (C3HC4-type RING finger) family protein contains Pfam domain, PF00097: Zinc finger, C3HC4 type (RING finger)" 5 4 24 At1g49400 ribosomal protein S17 family protein similar to 40S ribosomal protein S17 GI:1620985 from [Nicotiana plumbaginifolia] 5 4 25 At1g49470 expressed protein contains Pfam profile PF04819: Family of unknown function (DUF716) (Plant viral-response family) 5 5 1 At1g49630 "peptidase M16 family protein / insulinase family protein contains Pfam domain, PF05193: Peptidase M16 inactive domain" 5 5 2 At1g49700 expressed protein ; expression supported by MPSS 5 5 3 At1g49880 Erv1/Alr family protein similar to SP|Q63042 Augmenter of liver regeneration {Rattus norvegicus}; contains Pfam profile PF04777: Erv1 / Alr family 5 5 4 At1g49940 expressed protein contains similarity to putative beta-9 tubulin protein GB:AAF40459 GI:7211988 from [Arabidopsis thaliana] 5 5 5 At1g52790 "oxidoreductase, 2OG-Fe(II) oxygenase family protein similar to GS-AOP loci [GI:16118889, GI:16118887, GI:16118891, GI:16118893]; contains PF03171 2OG-Fe(II) oxygenase superfamily domain" 5 5 6 At1g52830 auxin-responsive protein / indoleacetic acid-induced protein 6 (IAA6) nearly identical to SP|Q38824 Auxin-responsive protein IAA6 (Indoleacetic acid-induced protein 6) {Arabidopsis thaliana} 5 5 7 At1g52990 "thioredoxin family protein similar to SP|P48384 Thioredoxin M-type, chloroplast precursor (TRX-M) {Pisum sativum}; contains Pfam profile PF00085: Thioredoxin" 5 5 8 At1g53040 expressed protein contains Pfam profile: PF04765 protein of unknown function (DUF616) 5 5 9 At1g53200 expressed protein 5 5 10 At1g53265 hypothetical protein 5 5 11 At1g53420 serine/threonine protein kinase-related contains 1 predicted transmembrane domain; low similarity to receptor-like serine/threonine kinase [Arabidopsis thaliana] GI:2465923 5 5 12 At1g53460 expressed protein 5 5 13 At1g56070 "elongation factor 2, putative / EF-2, putative similar to ELONGATION FACTOR 2 GB:O14460 from [Schizosaccharomyces pombe]" 5 5 14 At1g56120 leucine-rich repeat family protein / protein kinase family protein contains Pfam domains PF00560: Leucine Rich Repeat and PF00069: Protein kinase domain 5 5 15 At1g56280 "drought-responsive family protein contains an AT-AC intron 3, potentially contains a frameshift. An alternate model provides a translation more consistent with homologous proteins but lacks the AT-AC intron; similar to drought-induced mRNA, Di19 [Arabidopsis thaliana] gi|469110|emb|CAA55321" 5 5 16 At1g56320 expressed protein 5 5 17 At1g56530 "hydroxyproline-rich glycoprotein family protein contains proline-rich extensin domains, INTERPRO:IPR002965;" 5 5 18 At1g56580 "expressed protein contains Pfam profile PF04398: Protein of unknown function, DUF538" 5 5 19 At1g57560 myb family transcription factor (MYB50) similar to DNA-binding protein GI:19058 from [Hordeum vulgare] 5 5 20 At1g57610 "expressed protein contains Pfam domain, PF04678: Protein of unknown function, DUF607" 5 5 21 At1g61480 "S-locus protein kinase, putative similar to receptor protein kinase (IRK1) GI:836953 from [Ipomoea trifida]; contains S-locus glycoprotein family domain, Pfam:PF00954" 5 5 22 At1g61560 "seven transmembrane MLO family protein / MLO-like protein 6 (MLO6) idenctical to membrane protein Mlo6 [Arabidopsis thaliana] gi|14091582|gb|AAK53799; similar to MLO protein SWISS-PROT:P93766, NCBI_gi:1877221 [Hordeum vulgare][Barley]; contains Pfam profile PF03094: Mlo family" 5 5 23 At1g61710 DC1 domain-containing protein contains Pfam profile PF03107: DC1 domain 5 5 24 At1g61770 DNAJ heat shock N-terminal domain-containing protein similar to SP|Q9UBS4 DnaJ homolog subfamily B member 11 precursor Homo sapiens; contains Pfam profile PF00226 DnaJ domain 5 5 25 At1g61940 F-box family protein / tubby family protein similar to putative Tub family protein GI:4309738 from [Arabidopsis thaliana] 5 6 1 At1g62000 expressed protein 5 6 2 At1g62200 proton-dependent oligopeptide transport (POT) family protein contains Pfam profile: PF00854 POT family ; contains non-consensus GA donor site at intron 4 5 6 3 At1g62250 expressed protein 5 6 4 At1g64960 expressed protein 5 6 5 At1g65020 expressed protein 5 6 6 At1g65150 meprin and TRAF homology domain-containing protein / MATH domain-containing protein similar to ubiquitin-specific protease 12 [Arabidopsis thaliana] GI:11993471; contains Pfam profile PF00917: MATH domain 5 6 7 At1g65200 "ubiquitin carboxyl-terminal hydrolase-related contains Pfam profiles PF00443: Ubiquitin carboxyl-terminal hydrolase, PF04780: Protein of unknown function (DUF629), PF04781: Protein of unknown function (DUF627)" 5 6 8 At1g65342 hypothetical protein 5 6 9 At1g65390 "disease resistance protein (TIR class), putative domain signature TIR exists, suggestive of a disease resistance protein." 5 6 10 At1g65580 "endonuclease/exonuclease/phosphatase family protein similar to inositol polyphosphate 5-phosphatase II isoform (GI:15418718) [Mus musculus]; contains 6 (5 weak) Pfam: Pf00400 WD domain, G-beta repeats and Pfam PF03372: Endonuclease/Exonuclease/phosphatase family" 5 6 11 At1g65650 "ubiquitin carboxyl-terminal hydrolase family 1 protein similar to 26S proteasome regulatory complex subunit p37A [Drosophila melanogaster] GI:6434962; contains Pfam profile PF01088: Ubiquitin carboxyl-terminal hydrolase, family 1" 5 6 12 At1g68390 "expressed protein contains Pfam profile PF03267: Arabidopsis protein of unknown function, DUF266; expression supported by MPSS" 5 6 13 At1g68450 VQ motif-containing protein contains PF05678: VQ motif 5 6 14 At1g68585 expressed protein 5 6 15 At1g68640 bZIP family transcription factor (PERIANTHIA) identical to transcription factor PERIANTHIA GB:AAD19660 GI:4378757 from [Arabidopsis thaliana] 5 6 16 At1g68810 basic helix-loop-helix (bHLH) family protein contains Pfam profile: PF00010 helix-loop-helix DNA-binding domain 5 6 17 At1g68870 hypothetical protein 5 6 18 At1g69030 BSD domain-containing protein contains Pfam profile PF03909: BSD domain 5 6 19 At1g69080 universal stress protein (USP) family protein contains Pfam profile PF00582: universal stress protein family 5 6 20 At1g71840 "transducin family protein / WD-40 repeat family protein contains Pfam profile:PF00560 Leucine Rich Repeat (4 copies); Pfam profile:PF00069 Eukaryotic protein kinase domain; Pfam profile:PF00400 WD domain, G-beta repeat (7 copies)" 5 6 21 At1g71870 MATE efflux family protein contains Pfam profile PF01554: Uncharacterized membrane protein family 5 6 22 At1g72050 "zinc finger (C2H2 type) family protein contains multiple zinc finger domains: PF00096: Zinc finger, C2H2 type" 5 6 23 At1g72090 "radical SAM domain-containing protein / TRAM domain-containing protein contains Pfam profiles PF00919: UPF0004 family protein, PF04055: radical SAM domain protein, PF01938: TRAM domain" 5 6 24 At1g72250 kinesin motor protein-related 5 6 25 At1g72310 zinc finger (C3HC4-type RING finger) family protein (ATL3) identical to RING-H2 zinc finger protein (ATL3) GB:AF132013 (Arabidopsis thaliana) 5 7 1 At1g72500 inter-alpha-trypsin inhibitor heavy chain-related low similarity to Inter-alpha-inhibitor H4 heavy chain [Rattus norvegicus] GI:2292988; contains Pfam profile PF00092: von Willebrand factor type A domain 5 7 2 At1g72550 "tRNA synthetase beta subunit family protein contains Pfam profiles: PF03484 phenylalanine-tRNA synthetase, B5 domain, PF03483 B3/4 domain; an isoform contains a non-consensus TG acceptor splice site at a terminal exon." 5 7 3 AT5G57480 PC-1 5 7 4 3XSSC PC-1 5 7 5 AT1G29930 PC-1 5 7 6 3XSSC PC-1 5 7 7 AT3G44150 PC-1 5 7 8 3XSSC PC-1 5 7 9 AT4G00810 PC-1 5 7 10 3XSSC PC-1 5 7 11 At1g75330 "ornithine carbamoyltransferase, chloroplast / ornithine transcarbamylase / OTCase (OTC) identical to SP|O50039 Ornithine carbamoyltransferase, chloroplast precursor (EC 2.1.3.3) (OTCase) (Ornithine transcarbamylase) {Arabidopsis thaliana}" 5 7 12 At1g75380 wound-responsive protein-related similar to wound inducive gene GI:8096273 from [Nicotiana tabacum] 5 7 13 At1g75560 "zinc knuckle (CCHC-type) family protein contains Pfam domain, PF00098: Zinc knuckle" 5 7 14 At1g75640 "leucine-rich repeat family protein / protein kinase family protein contains protein kinase domain, Pfam:PF00069; contains leucine-rich repeats, Pfam:PF00560" 5 7 15 At1g75830 "plant defensin-fusion protein, putative (PDF1.1) identical to SP|P30224 Cysteine-rich antifungal protein 1 precursor (AFP1) (Anther-specific protein S18 homolog) {Arabidopsis thaliana}" 5 7 16 At1g75880 family II extracellular lipase 1 (EXL1) EXL1 (PMID:11431566); similar to anter-specific proline-rich protein (APG) SP:P40602 [Arabidopsis thaliana] 5 7 17 At1g76050 "pseudouridine synthase family protein contains Pfam profiles: PF00849 RNA pseudouridylate synthase, PF01479: S4 domain" 5 7 18 At1g76100 plastocyanin identical to plastocyanin GI:1865683 from [Arabidopsis thaliana] 5 7 19 At1g78760 F-box family protein contains F-box domain Pfam:PF00646 5 7 20 At1g78800 "glycosyl transferase family 1 protein contains similarity to glycosyltransferase GI:871530 from [Saccharomyces cerevisiae], Alg2 mannosyltransferase [gi:3868942] from Rhizomucor pusillus; contains Pfam profile: PF00534 Glycosyl transferases group 1" 5 7 21 At1g78920 vacuolar-type H+-translocating inorganic pyrophosphatase (AVPL1) identical to vacuolar-type H+-translocating inorganic pyrophosphatase GI:6901676 from [Arabidopsis thaliana] 5 7 22 At1g78970 "lupeol synthase (LUP1) / 2,3-oxidosqualene-triterpenoid cyclase identical to lupeol synthase GI:1762150 from [Arabidopsis thaliana], 2,3-oxidosqualene-triterpenoid cyclase [Arabidopsis thaliana] GI:2738027; contains Pfam profile PF00432: Prenyltransferase and squalene oxidase repeat; contains TIGRfam profile TIGR01787: squalene/oxidosqualene cyclases; identical to cDNA 2,3-oxidosqualene-triterpenoid cyclase GI:2738026" 5 7 23 At1g79130 auxin-responsive family protein similar to auxin-induced protein X10A (SP:P33080) [Glycine max] 5 7 24 At1g79190 expressed protein 5 7 25 At1g79400 "cation/proton exchanger, putative (CHX2) monovalent cation:proton antiporter family 2 (CPA2) member, PMID:11500563" 5 8 1 At1g79440 "succinate-semialdehyde dehydrogenase (SSADH1) similar to succinate-semialdehyde dehydrogenase [NADP+] (SSDH) [Escherichia coli] SWISS-PROT:P25526; identical to succinic semialdehyde dehydrogenase mRNA, nuclear gene encoding mitochondrial protein GI:6684441; contains TIGRfam profile TIGR01780:succinic semialdehyde dehydrogenase; contains Pfam profile PF00171: aldehyde dehydrogenase (NAD) family protein" 5 8 2 At2g02000 "glutamate decarboxylase, putative strong similarity to glutamate decarboxylase [Nicotiana tabacum] GI:21327029" 5 8 3 At2g02060 "calcium-dependent protein kinase-related / CDPK-related contains TIGRFAM TIGR01557: myb-like DNA-binding domain, SHAQKYF class; contains Pfam PF00249: Myb-like DNA-binding domain; similar to CDPK substrate protein 1; CSP1 (GI:6942190) [Mesembryanthemum crystallinum]." 5 8 4 At2g02300 F-box family protein / SKP1 interacting partner 3-related contains similarity to SKP1 interacting partner 3 GI:10716951 from [Arabidopsis thaliana] 5 8 5 At2g02370 expressed protein 5 8 6 At2g02550 exonuclease family protein contains similarity to exonuclease I [Homo sapiens] gi|4249655|gb|AAD13754 5 8 7 At2g02610 DC1 domain-containing protein contains Pfam profile PF03107: DC1 domain 5 8 8 At2g02780 "leucine-rich repeat transmembrane protein kinase, putative " 5 8 9 At2g02835 hypothetical protein 5 8 10 At2g06095 expressed protein 5 8 11 At2g06255 expressed protein 5 8 12 At2g06820 expressed protein low similarity to zinc finger protein [Arabidopsis thaliana] GI:976277 5 8 13 At2g06908 hypothetical protein 5 8 14 At2g07240 "Ulp1 protease family protein contains Pfam profile PF02902: Ulp1 protease family, C-terminal catalytic domain" 5 8 15 At2g07320 SWIM zinc finger family protein contains Pfam profile PF04434: SWIM zinc finger 5 8 16 At2g07779 expressed protein 5 8 17 At2g07676 expressed protein 5 8 18 At2g15220 "secretory protein, putative similar to NtPRp27 [Nicotiana tabacum] GI:5360263; contains Pfam profile PF04450: Plant Basic Secretory Protein" 5 8 19 At2g15280 "reticulon family protein (RTNLB10) low similarity to neuroendocrine-specific protein C [Homo sapiens] GI:307311, SP|Q64548 Reticulon 1 (Neuroendocrine-specific protein) {Rattus norvegicus}; contains Pfam profile PF02453: Reticulon" 5 8 20 At2g15430 DNA-directed RNA polymerase II 36 kDa polypeptide A / RNA polymerase II subunit 3 (RPB36A) identical to SP|Q39211 DNA-directed RNA polymerase II 36 kDa polypeptide A (EC 2.7.7.6) (RNA polymerase II subunit 3) {Arabidopsis thaliana} 5 8 21 At2g15490 UDP-glucoronosyl/UDP-glucosyl transferase family protein contains Pfam profile: PF00201 UDP-glucoronosyl and UDP-glucosyl transferase 5 8 22 At2g15660 hypothetical protein 5 8 23 At2g15730 expressed protein 5 8 24 At2g15970 "cold-acclimation protein, putative (FL3-5A3) similar to cold acclimation WCOR413-like protein gamma form [Hordeum vulgare] gi|18449100|gb|AAL69988; similar to stress-regulated protein SAP1 [Xerophyta viscosa] gi|21360378|gb|AAM47505; identical to cDNA cold acclimation protein WCOR413-like protein alpha form GI:10121840, cold acclimation protein homolog [Arabidopsis thaliana] GI:11127595" 5 8 25 At2g16030 expressed protein 5 9 1 At2g18876 expressed protein 5 9 2 At2g18915 F-box family protein / LOV kelch protein 2 (LKP2) / adagio 2 (ADO2) E3 ubiquitin ligase SCF complex F-box subunit; identical to Adagio 2 GI:13487070 from [Arabidopsis thaliana]; contains Pfam profiles PF01344: Kelch motif and PF00646: F-box domain; identical to cDNA LOV kelch protein 2 GI:18146957; identical to cDNA Adagio 2 (ADO2) GI:13487069 5 9 3 At2g19090 "expressed protein contains Pfam profiles: PF04782 protein of unknown function (DUF632), PF04783 protein of unknown function (DUF630); expression supported by MPSS" 5 9 4 At2g19170 subtilase family protein contains similarity to meiotic serine proteinase TMP GI:6468325 from [Lycopersicon esculentum] 5 9 5 At2g19380 "RNA recognition motif (RRM)-containing protein similar to UBP1 interacting protein 1a [Arabidopsis thaliana] GI:19574236; contains InterPro entry IPR000504: RNA-binding region RNP-1 (RNA recognition motif) (RRM); contains Pfam profile PF00096: Zinc finger, C2H2 type" 5 9 6 At2g19430 transducin family protein / WD-40 repeat family protein similar to WD-repeat protein 5 (SP:Q9UGP9) [Homo sapiens]; contains 7 Trp-Asp WD-40 repeats 5 9 7 At2g19610 "zinc finger (C3HC4-type RING finger) family protein contains a zinc finger, C3HC4 type (RING finger), signature, PROSITE:PS00518" 5 9 8 At2g19640 SET domain-containing protein contains Pfam profile PF00856: SET domain 5 9 9 At2g22310 ubiquitin-specific protease 4 (UBP4) identical to GI:2347100 5 9 10 At2g22370 expressed protein 5 9 11 At2g22560 "kinase interacting protein-related similar to kinase interacting protein 1 (GI:13936326) [Petunia integrifolia]; weak similarity to Myosin II heavy chain, non muscle (Swiss-Prot:P08799) [Dictyostelium discoideum" 5 9 12 At2g22630 MADS-box protein (AGL17) nearly identical to MADS-box protein AGL17 [Arabidopsis thaliana] GI:862648 5 9 13 At2g22800 homeobox-leucine zipper protein 9 (HAT9) / HD-ZIP protein 9 identical to GB:U09341 5 9 14 At2g22860 phytosulfokines 2 (PSK2) identical to phytosulfokines 2 (PSK2) from [Arabidopsis thaliana] 5 9 15 At2g22990 sinapoylglucose:malate sinapoyltransferase (SNG1) similar to serine carboxypeptidase I precursor (SP:P37890) [Oryza sativa]; contains Pfam profile PF00450: Serine carboxypeptidase; identical to cDNA sinapoylglucose:malate sinapoyltransferase (SNG1) GI:8699618 5 9 16 At2g23050 "phototropic-responsive NPH3 family protein contains NPH3 family domain, Pfam:PF03000" 5 9 17 At2g25890 glycine-rich protein / oleosin 5 9 18 At2g25950 expressed protein 5 9 19 At2g26130 "zinc finger (C3HC4-type RING finger) family protein contains a zinc finger, C3HC4 type (RING finger), signature, PROSITE:PS00518" 5 9 20 At2g26180 calmodulin-binding family protein low similarity to SF16 protein [Helianthus annuus] GI:560150; contains Pfam profile PF00612: IQ calmodulin-binding motif 5 9 21 At2g26370 MD-2-related lipid recognition domain-containing protein / ML domain-containing protein contains Pfam profile PF02221: ML domain 5 9 22 At2g26430 ania-6a type cyclin (RCY1) nearly identical to ania-6a type cyclin [Arabidopsis thaliana] GI:13924511 5 9 23 At2g26580 plant-specific transcription factor YABBY family protein contains Pfam profile: PF04690 YABBY protein 5 9 24 At2g26620 "glycoside hydrolase family 28 protein / polygalacturonase (pectinase) family protein similar to SP|P35339 Exopolygalacturonase precursor (EC 3.2.1.67) (Pectinase) (Galacturan 1,4-alpha-galacturonidase) {Zea mays}; contains Pfam profile PF00295: Glycosyl hydrolases family 28 (polygalacturonases)" 5 9 25 At2g29310 "tropinone reductase, putative / tropine dehydrogenase, putative similar to tropinone reductase SP:P50165 from [Datura stramonium]" 5 10 1 At2g29360 "tropinone reductase, putative / tropine dehydrogenase, putative similar to tropinone reductase SP:P50165 from [Datura stramonium]" 5 10 2 At2g29525 expressed protein 5 10 3 At2g29560 "enolase, putative similar to enolase [Spinacia oleracea] gi|8919731|emb|CAB96173" 5 10 4 At2g29700 pleckstrin homology (PH) domain-containing protein (PH1) identical to AtPH1 [Arabidopsis thaliana] GI:5926716; contains Pfam profile PF00169: PH domain 5 10 5 At2g29760 pentatricopeptide (PPR) repeat-containing protein contains Pfam profile PF01535: PPR repeat 5 10 6 At2g29930 F-box family protein contains F-box domain Pfam:PF00646 5 10 7 At2g29970 heat shock protein-related contains similarity to 101 kDa heat shock protein; HSP101 [Triticum aestivum] gi|11561808|gb|AAC83689 5 10 8 At2g32620 "cellulose synthase family protein similar to Zea mays cellulose synthase-5 [gi:9622882], -4 [gi:9622880], -9 [gi:9622890]" 5 10 9 At2g32650 expressed protein contains Pfam PF05899: Protein of unknown function (DUF861) 5 10 10 At2g32790 "ubiquitin-conjugating enzyme, putative similar to ubiquitin conjugating enzyme from [Oryza sativa] GI:1373001, {Arabidopsis thaliana} SP|P35134, SP|P35131; contains Pfam profile PF00179: Ubiquitin-conjugating enzyme" 5 10 11 At2g32850 "protein kinase family protein contains protein kinase domain, Pfam:PF00069" 5 10 12 At2g33000 ubiquitin-associated (UBA)/TS-N domain-containing protein-related contains weak hit to Pfam F00627: UBA/TS-N domain; supported by tandem duplication of ubiquitin-associated (UBA)/TS-N domain protein (GI:2924790) (TIGR_Ath1:At2g33010) [Arabidopsis thaliana] 5 10 13 At2g33060 "leucine-rich repeat family protein contains leucine rich-repeat domains Pfam:PF00560, INTERPRO:IPR001611; contains similarity to Hcr2-0B [Lycopersicon esculentum] gi|3894387|gb|AAC78593" 5 10 14 At2g33240 "myosin, putative similar to myosin (GI:433663) [Arabidopsis thaliana]; myosin my5A (SP:Q02440) {Gallus gallus}" 5 10 15 At2g33290 "SET domain-containing protein (SUVH2) identical to SUVH2 [Arabidopsis thaliana] GI:13517745; contains Pfam profiles PF00856: SET domain, PF05033: Pre-SET motif, PF02182: YDG/SRA domain; identical to cDNA SUVH2 (SUVH2) GI:13517744" 5 10 16 At2g35840 sucrose-phosphatase 1 (SPP1) identical to sucrose-phosphatase (SPP1) [Arabidopsis thaliana] GI:11127757 5 10 17 At2g35900 expressed protein 5 10 18 At2g36050 ovate protein-related contains TIGRFAM TIGR01568 : uncharacterized plant-specific domain TIGR01568 5 10 19 At2g36080 "DNA-binding protein, putative strong similarity to DNA-binding proteins from [Arabidopsis thaliana] RAV1 GI:3868857, RAV2 GI:3868859; contains Pfam profile PF02362: B3 DNA binding domain" 5 10 20 At2g36260 "iron-sulfur cluster assembly complex protein, putative similar to IscA (putative iron-sulfur cluster assembly protein) [Azotobacter vinelandii] GI:2271523; contains Pfam profile PF01521: HesB-like domain" 5 10 21 At2g36310 "inosine-uridine preferring nucleoside hydrolase family protein similar to Chain A, Crystal Structure Of Nucleoside Hydrolase From Leishmania MajorGI:8569431; contains Pfam profile PF01156: Inosine-uridine preferring nucleoside hydrolase" 5 10 22 At2g36460 "fructose-bisphosphate aldolase, putative similar to PIR|S65073 fructose-bisphosphate aldolase (EC 4.1.2.13) isoenzyme C-1, cytosolic [Oryza sativa]; contains Pfam profile PF00274 Fructose-bisphosphate aldolase class-I" 5 10 23 At2g36530 enolase identical to SWISS-PROT:P25696 enolase (EC 4.2.1.11) (2-phosphoglycerate dehydratase)(2-phospho-D- glycerate hydro-lyase) [Arabidopsis thaliana] 5 10 24 At2g39110 "protein kinase, putative similar to protein kinase [Lophopyrum elongatum] gi|13022177|gb|AAK11674" 5 10 25 At2g39180 "protein kinase family protein contains protein kinase domain, Pfam:PF00069" 5 11 1 At2g39340 SAC3/GANP family protein contains Pfam profile: PF03399 SAC3/GANP family 5 11 2 At2g39400 "hydrolase, alpha/beta fold family protein similar to monoglyceride lipase from [Homo sapiens] GI:14594904, [Mus musculus] GI:2632162; contains Pfam profile PF00561: hydrolase, alpha/beta fold family" 5 11 3 At2g39550 geranylgeranyl transferase type I beta subunit (GGT-IB) nearly identical to GI:11878247 5 11 4 At2g39630 glycosyl transferase family 2 protein similar to dolichyl-phosphate beta-glucosyltransferase from Saccharomyces cerevisiae [SP|P40350]; contains Pfam glycosyltransferase group 2 domain PF00535 5 11 5 At2g39730 "ribulose bisphosphate carboxylase/oxygenase activase / RuBisCO activase identical to SWISS-PROT:P10896 ribulose bisphosphate carboxylase/oxygenase activase, chloroplast precursor (RuBisCO activase, RA)[Arabidopsis thaliana]" 5 11 6 At2g39790 mitochondrial glycoprotein family protein / MAM33 family protein low similarity to SUAPRGA1 [Emericella nidulans] GI:6562379; contains Pfam profile PF02330: Mitochondrial glycoprotein 5 11 7 At2g42260 expressed protein and genefinder 5 11 8 At2g42300 basic helix-loop-helix (bHLH) family protein contains Pfam profile: PF00010 helix-loop-helix DNA-binding domain 5 11 9 At2g42470 meprin and TRAF homology domain-containing protein / MATH domain-containing protein contains Pfam profile PF00917: MATH domain 5 11 10 At2g42510 "spliceosome protein-related contains Pfam domain, PF04938: Survival motor neuron (SMN) interacting protein 1 (SIP1)" 5 11 11 At2g42650 60S ribosomal protein-related similar to PBK1 protein (GI:3668141) [Homo sapiens]; weak similarity to 60S ribosomal protein L10a. (Swiss-Prot:Q9SW75) [Chlamydomonas reinhardtii] 5 11 12 At2g42710 ribosomal protein L1 family protein 5 11 13 At2g42880 "mitogen-activated protein kinase, putative / MAPK, putative (MPK20) mitogen-activated protein kinase (MAPK)(AtMPK20), PMID:12119167" 5 11 14 At2g42930 glycosyl hydrolase family protein 17 similar to elicitor inducible chitinase Nt-SubE76 GI:11071974 from [Nicotiana tabacum] 5 11 15 At2g45610 expressed protein low similarity to PrMC3 [Pinus radiata] GI:5487873 5 11 16 At2g45650 MADS-box protein (AGL6) 5 11 17 At2g45810 "DEAD/DEAH box helicase, putative " 5 11 18 At2g45870 expressed protein contains Pfam profile PF05249: Uncharacterised protein family (UPF0187) 5 11 19 At2g46050 pentatricopeptide (PPR) repeat-containing protein contains INTERPRO:IPR002885 PPR repeats 5 11 20 At2g46090 "diacylglycerol kinase family protein contains INTERPRO domain, IPR001206, DAG-kinase catalytic domain" 5 11 21 At2g46240 "IQ domain-containing protein / BAG domain-containing protein contains Pfam profiles PF00612: IQ calmodulin-binding motif, PF02179: BAG (Apoptosis regulator Bcl-2 protein) domain" 5 11 22 At2g46280 "eukaryotic translation initiation factor 3 subunit 2 / TGF-beta receptor interacting protein 1 / eIF-3 beta / eIF3i / TRIP-1 (TIF3I1) identical to eukaryotic translation initiation factor 3 subunit 2 (SP:Q38884) {Arabidopsis thaliana}; contains Pfam PF00400: WD domain, G-beta repeat (5 copies)" 5 11 23 At3g01610 "AAA-type ATPase family protein contains Pfam domain, PF00004: ATPase, AAA family ('A'TPases 'A'ssociated with diverse cellular 'A'ctivities)" 5 11 24 At3g01670 expressed protein 5 11 25 At3g01830 "calmodulin-related protein, putative similar to regulator of gene silencing calmodulin-related protein GI:12963415 from [Nicotiana tabacum]; Pfam HMM hit: EF hand" 5 12 1 At3g01860 expressed protein 5 12 2 At3g02010 pentatricopeptide (PPR) repeat-containing protein contains Pfam profile PF01535: PPR repeat 5 12 3 At3g02065 DEAD/DEAH box helicase family protein contains Pfam profile: PF00270 DEAD/DEAH box helicase 5 12 4 At3g02200 "proteasome family protein contains Pfam domain, PF01399: PCI domain" 5 12 5 At3g02240 expressed protein 5 12 6 At3g04860 expressed protein 5 12 7 At3g04920 40S ribosomal protein S24 (RPS24A) similar to ribosomal protein S19 GB:445612 [Solanum tuberosum] and similar to ribosomal protein S24 GB:4506703 [Homo sapiens] 5 12 8 At3g05090 transducin family protein / WD-40 repeat family protein contains seven G-protein beta WD-40 repeats; similar to uncharacterized KIAA1449 protein (gi:7959157) [Homo sapiens] 5 12 9 At3g05140 "protein kinase family protein contains protein kinase domain, Pfam:PF00069" 5 12 10 At3g05300 cytidine/deoxycytidylate deaminase family protein similar to SP|O34598 Guanine deaminase (EC 3.5.4.3) (Guanase) (Guanine aminase) (Guanine aminohydrolase) (GAH) (GDEase) {Bacillus subtilis}; contains Pfam profile PF00383: Cytidine and deoxycytidylate deaminase zinc-binding region 5 12 11 At3g05360 "disease resistance family protein / LRR family protein contains leucine rich-repeat domains Pfam:PF00560, INTERPRO:IPR001611; similar to elicitor-inducible LRR receptor-like protein EILP [Nicotiana tabacum] gi|6635236|dbj|BAA88636; similar to Cf-2.2 [Lycopersicon pimpinellifolium] gi|1184077|gb|AAC15780" 5 12 12 At3g05520 F-actin capping protein alpha subunit family protein contains Pfam profile: PF01267 F-actin capping protein alpha subunit 5 12 13 At3g05560 60S ribosomal protein L22-2 (RPL22B) identical to 60S ribosomal protein L22-2 SP:Q9M9W1 from [Arabidopsis thaliana] 5 12 14 At3g08010 expressed protein 5 12 15 At3g08490 hypothetical protein 5 12 16 At3g08650 "metal transporter family protein contains ZIP Zinc transporter domain, Pfam:PF02535" 5 12 17 At3g08710 "thioredoxin family protein similar to thioredoxin H-type GB:P29448 SP|P29448 [Arabidopsis thaliana], Thioredoxin H-type 2 (TRX-H2) SP|Q07090 {Nicotiana tabacum}; contains Pfam profile: PF00085 Thioredoxin" 5 12 18 At3g08890 "expressed protein contains Pfam profile PF04398: Protein of unknown function, DUF538" 5 12 19 At3g08930 LMBR1 integral membrane family protein contains 5 transmembrane domains; contains Pfam PF04791: LMBR1-like conserved region; similar to unknown protein GB:BAA83351 [Oryza sativa] 5 12 20 At3g09050 expressed protein 5 12 21 At3g09100 "mRNA capping enzyme family protein similar to mRNA capping enzyme [Xenopus laevis] GI:7239232; contains Pfam profiles PF01331: mRNA capping enzyme catalytic domain, PF00782: Dual specificity phosphatase catalytic domain" 5 12 22 At3g11580 "DNA-binding protein, putative similar to DNA-binding proteins from [Arabidopsis thaliana] RAV1 GI:3868857 and RAV2 GI:3868859, AP2 domain containing protein RAP2.8 [Arabidopsis thaliana] GI:2281641; contains Pfam profile PF02362: B3 DNA binding domain" 5 12 23 At3g11630 "2-cys peroxiredoxin, chloroplast (BAS1) identical to SP|Q96291 2-cys peroxiredoxin BAS1, chloroplast precursor {Arabidopsis thaliana}; contains Pfam profile: PF00578 AhpC/TSA (alkyl hydroperoxide reductase and thiol-specific antioxidant) family" 5 12 24 At3g11800 expressed protein 5 12 25 At3g11840 U-box domain-containing protein low similarity to immediate-early fungal elicitor protein CMPG1 [Petroselinum crispum] GI:14582200; contains Pfam profile PF04564: U-box domain 5 13 1 At3g11950 UbiA prenyltransferase family protein contains Pfam profile PF01040: UbiA prenyltransferase family 5 13 2 At3g12000 "S-locus related protein SLR1, putative (S1) identical to S-locus related protein SLR1 homolog (AtS1) GI:246209 Arabidopsis thaliana]; contains Pfam profiles PF01453: Lectin (probable mannose binding), PF00954: S-locus glycoprotein family" 5 13 3 At3g12145 "polygalacturonase inhibitor, putative / leucine-rich repeat protein (FLR1) similar to Swiss-Prot:Q05091 polygalacturonase inhibitor precursor (Polygalacturonase-inhibiting protein) [Pyrus communis]; identical to leucine-rich repeat protein FLR1 (FLR1) cDNA NCBI_gi:7637422; contains Pfam domain PF00560 Leucine Rich Repeat" 5 13 4 At3g12200 "protein kinase family protein contains protein kinase domain, Pfam:PF00069; contains serine/threonine protein kinase domain, INTERPRO:IPR002290" 5 13 5 At3g14610 "cytochrome P450, putative similar to GB:Q05047 from [Catharanthus roseus]" 5 13 6 At3g14670 hypothetical protein 5 13 7 At3g14840 leucine-rich repeat family protein / protein kinase family protein contains Pfam domains PF00560: Leucine Rich Repeat and PF00069: Protein kinase domain; contains 2 predicted transmembrane domains 5 13 8 At3g14860 NHL repeat-containing protein contains Pfam profile PF01436: NHL repeat 5 13 9 At3g15010 "RNA recognition motif (RRM)-containing protein similar to UBP1 interacting protein 1a [Arabidopsis thaliana] GI:19574236; contains Pfam profile: PF00076 RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)" 5 13 10 At3g15030 "TCP family transcription factor, putative similar to TCP3 GB:AAC24010 [Arabidopsis thaliana]" 5 13 11 At3g15200 pentatricopeptide (PPR) repeat-containing protein contains Pfam profile PF01535: PPR repeat 5 13 12 At3g15260 "protein phosphatase 2C, putative / PP2C, putative similar to protein phosphatase type 2C GB:AAD17805 from [Lotus japonicus]" 5 13 13 At3g17830 "DNAJ heat shock family protein similar to SP|P35514 Chaperone protein dnaJ {Lactococcus lactis}; contains Pfam profiles PF00226: DnaJ domain, PF01556: DnaJ C terminal region, PF00684: DnaJ central domain (4 repeats)" 5 13 14 At3g17890 expressed protein 5 13 15 At3g18080 glycosyl hydrolase family 1 protein contains Pfam PF00232 : Glycosyl hydrolase family 1 domain; TIGRFAM TIGR01233: 6-phospho-beta-galactosidase; similar to beta-glucosidase BGQ60 precursor GB:A57512 [Hordeum vulgare]; similar to beta-mannosidase enzyme (GI:17226270) [Lycopersicon esculentum] 5 13 16 At3g18140 transducin family protein / WD-40 repeat family protein contains 6 WD-40 repeats (PF00400); similar to Pop3 (GP:3434986) [Schizosaccharomyces pombe] 5 13 17 At3g18280 protease inhibitor/seed storage/lipid transfer protein (LTP) family protein similar to TED4 [Zinnia elegans] GI:493721; contains Pfam protease inhibitor/seed storage/LTP family domain PF00234 5 13 18 At3g18330 F-box family protein contains Pfam PF00646: F-box domain; contains TIGRFAM TIGR01640: F-box protein interaction domain 5 13 19 At3g18485 hypothetical protein 5 13 20 At3g18530 expressed protein similar to unknown protein GB:AAF24615 from [Arabidopsis thaliana] 5 13 21 At3g21220 "mitogen-activated protein kinase kinase (MAPKK), putative (MKK5) identical to GB:BAA28831 from [Arabidopsis thaliana]; mitogen-activated protein kinase kinase (MAPKK) family, PMID:12119167" 5 13 22 At3g21270 "Dof-type zinc finger domain-containing protein (ADOF2) identical to Dof zinc finger protein ADOF2 GI:3608263 from [Arabidopsis thaliana]; identical to cDNA adof2 mRNA for Dof zinc finger protein GI:3608262; contains Pfam profile PF02701: Dof domain, zinc finger" 5 13 23 At3g21450 "protein kinase family protein contains eukaryotic protein kinase domain, INTERPRO:IPR000719" 5 13 24 At3g21510 two-component phosphorelay mediator 3 (HP3) identical to ATHP3 [Arabidopsis thaliana] GI:4156245 5 13 25 At3g21650 "serine/threonine protein phosphatase 2A (PP2A) regulatory subunit B', putative similar to SWISS-PROT:Q28653 serine/threonine protein phosphatase 2A, 56 kDa regulatory subunit, delta isoform (PP2A, B subunit, B' delta isoform, PP2A, B subunit, B56 delta isoform, PP2A, B subunit, PR61 delta isoform, PP2A, B subunit, R5 delta isoform, PP2A, B subunit, B'-gamma) [Oryctolagus cuniculus]; contains Pfam domain, PF01603: Protein phosphatase 2A regulatory B subunit (B56 family)" 5 14 1 At3g21700 expressed protein 5 14 2 At3g21840 "E3 ubiquitin ligase SCF complex subunit SKP1/ASK1 (At7), putative E3 ubiquitin ligase; similar to Skp1 homolog GI:3068809, UIP2 GI:3719211 from [Arabidopsis thaliana]" 5 14 3 At3g21890 zinc finger (B-box type) family protein contains Pfam profile: PF01760 CONSTANS family zinc finger 5 14 4 At3g24600 hypothetical protein 5 14 5 At3g24660 "leucine-rich repeat transmembrane protein kinase, putative identical to putative kinase-like protein TMKL1 precursor GB:P33543 from [Arabidopsis thaliana], (Plant Mol. Biol. 23 (2), 415-421 (1993))" 5 14 6 At3g24830 60S ribosomal protein L13A (RPL13aB) similar to 60S RIBOSOMAL PROTEIN L13A GB:P35427 from [Rattus norvegicus] 5 14 7 At3g24890 "synaptobrevin-related similar to SYNAPTOBREVIN-RELATED PROTEIN GB:P47192 from [Arabidopsis thaliana] (Proc. Natl. Acad. Sci. U.S.A. (1992) 89(9), 3894-3898); contains Pfam profile PF00957: synaptobrevin" 5 14 8 At3g25150 "nuclear transport factor 2 (NTF2) family protein / RNA recognition motif (RRM)-containing protein contains Pfam profile: PF00076 RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain); similar to ras-GTPase-activating protein (GAP<120>) SH3-domain-binding protein 2 GB:NP_035946 [Mus musculus]" 5 14 9 At3g25180 cytochrome P450 family protein similar to cytochrome P450 monooxygenase GB:AAC49188 [Pisum sativum]; contains Pfam profile: PF00067 cytochrome P450 5 14 10 At3g25470 "bacterial hemolysin-related similar to hemolysine GB:AAD36643 from [Thermotoga maritima], contains Pfam profile: PF01479 S4 domain" 5 14 11 At3g25530 6-phosphogluconate dehydrogenase NAD-binding domain-containing protein low similarity to SP|P23523 2-hydroxy-3-oxopropionate reductase (EC 1.1.1.60) (Tartronate semialdehyde reductase) {Escherichia coli}; contains Pfam profile PF03446: NAD binding domain of 6-phosphogluconate dehydrogenase; supporting cDNA gi|15375067|gb|AY044183.1| 5 14 12 At3g28140 calmodulin-binding protein 5 14 13 At3g28180 "glycosyl transferase family 2 protein similar to beta-(1-3)-glucosyl transferase GB:AAC62210 GI:3687658 from [Bradyrhizobium japonicum], cellulose synthase from Agrobacterium tumeficiens [gi:710492] and Agrobacterium radiobacter [gi:710493]; contains Pfam glycosyl transferase, group 2 family protein domain PF00535" 5 14 14 At3g28360 ABC transporter family protein similar to P-glycoprotein homologue GI:2292907 from [Hordeum vulgare subsp. vulgare] 5 14 15 At3g28420 expressed protein 5 14 16 At3g28600 AAA-type ATPase family protein contains Pfam profile: ATPase family PF00004 5 14 17 At3g28660 pentatricopeptide (PPR) repeat-containing protein contains Pfam profile PF01535: PPR repeat 5 14 18 At3g28840 expressed protein 5 14 19 At3g28890 "leucine-rich repeat family protein contains leucine rich-repeat (LRR) domains Pfam:PF00560, INTERPRO:IPR001611; contains similarity to Hcr2-0B [Lycopersicon esculentum] gi|3894387|gb|AAC78593" 5 14 20 At3g42670 "SNF2 domain-containing protein / helicase domain-containing protein low similarity to SP|P41410 DNA repair protein rhp54 (RAD54 homolog) {Schizosaccharomyces pombe}; contains PFam profiles PF00271: Helicase conserved C-terminal domain, PF00176: SNF2 family N-terminal domain" 5 14 21 At3g42725 expressed protein 5 14 22 At3g42920 "hypothetical protein predicted proteins, Arabidopsis thaliana" 5 14 23 At3g42990 hypothetical protein 5 14 24 At3g43280 "hypothetical protein predicted protein, Arabidopsis thaliana" 5 14 25 At3g43350 "helicase-related low similarity to SP|Q9UUA2 DNA repair and recombination protein pif1, mitochondrial precursor {Schizosaccharomyces pombe}" 5 15 1 At3g43540 "expressed protein hypothetical protein slr1699 - Synechocystis sp. (strain PCC 6803), PIR:S75306" 5 15 2 At3g43583 hypothetical protein 5 15 3 At3g46550 fasciclin-like arabinogalactan family protein similar to fasciclin-like arabinogalactan protein FLA8 [Arabidopsis thaliana] gi|10880493|gb|AAG24276 5 15 4 At3g46610 pentatricopeptide (PPR) repeat-containing protein contains Pfam profile PF01535: PPR repeat 5 15 5 At3g46790 pentatricopeptide (PPR) repeat-containing protein contains INTERPRO:IPR002885 PPR repeats 5 15 6 At3g46850 subtilase family protein contains similarity to prepro-cucumisin GI:807698 from [Cucumis melo]; 5 15 7 At3g47030 F-box family protein contains F-box domain Pfam:PF00646 5 15 8 At3g47090 "leucine-rich repeat transmembrane protein kinase, putative receptor kinase-like protein (Xa21), Oryza longistaminata, U72725" 5 15 9 At3g47250 expressed protein contains Pfam profile PF03140: Plant protein of unknown function 5 15 10 At3g47320 hypothetical protein several hypothetical proteins - Arabidopsis thaliana 5 15 11 At3g50100 "exonuclease family protein contains exonuclease domain, Pfam:PF00929" 5 15 12 At3g50160 hypothetical protein contains Pfam profile PF03140: Plant protein of unknown function 5 15 13 At3g50330 basic helix-loop-helix (bHLH) family protein contains Pfam profile: PF00010 helix-loop-helix DNA-binding domain 5 15 14 At3g50376 hypothetical protein 5 15 15 At3g50550 expressed protein isoform contains a non-consensus AT donor site at intron 1 5 15 16 At3g50610 hypothetical protein 5 15 17 At3g50780 expressed protein 5 15 18 At3g50840 "phototropic-responsive NPH3 family protein contains NPH3 family domain, Pfam:PF03000" 5 15 19 At3g53440 expressed protein 5 15 20 At3g53470 "expressed protein ribosomal protein S25, cytosolic, Arabidopsis thaliana, PIR:T08568" 5 15 21 At3g53610 "Ras-related GTP-binding protein, putative similar to Ras-related protein ARA-3 SP:P28186 from [Arabidopsis thaliana]" 5 15 22 At3g53670 expressed protein 5 15 23 At3g53810 "lectin protein kinase, putative similar to receptor lectin kinase 3 [Arabidopsis thaliana] gi|4100060|gb|AAD00733; contains protein kinase domain, Pfam:PF00069; contains legume lectins alpha and beta domains, Pfam:PF00138 and Pfam:PF00139" 5 15 24 At3g53870 "40S ribosomal protein S3 (RPS3B) ribosomal protein S3a - Xenopus laevis, PIR:R3XL3A" 5 15 25 At3g53990 universal stress protein (USP) family protein contains Pfam PF00582: universal stress protein family 5 16 1 At3g54030 "protein kinase family protein contains protein kinase domain, Pfam:PF00069" 5 16 2 At3g56810 expressed protein 5 16 3 At3g56860 UBP1 interacting protein 2a (UBA2a) identical to UBP1 interacting protein 2a [Arabidopsis thaliana] GI:19682816; contains InterPro entry IPR000504: RNA-binding region RNP-1 (RNA recognition motif) (RRM) 5 16 4 At3g57040 two-component responsive regulator / response reactor 4 (RR4) identical to responce reactor4 GI:3273202 from [Arabidopsis thaliana]; contains Pfam profile: PF00072 response regulator receiver domain 5 16 5 At3g57100 hypothetical protein similar to At14a (GI:11994571 and GI:11994573) [Arabidopsis thaliana]; contains Pfam PF05055 : Protein of unknown function (DUF677); contains Prosite PS00453: FKBP-type peptidyl-prolyl cis-trans isomerase signature 1; contains one transmembrane domain 5 16 6 At3g57280 expressed protein contains Pfam profile PF03647: Uncharacterised protein family (UPF0136) 5 16 7 At3g57340 DNAJ heat shock N-terminal domain-containing protein similar to SP|Q9QYI4 DnaJ homolog subfamily B member 12 Mus musculus; contains Pfam profile PF00226 DnaJ domain 5 16 8 At3g57480 "zinc finger (C2H2 type, AN1-like) family protein contains Pfam domain, PF00096: Zinc finger, C2H2 type; contains Pfam domain, PF01428: AN1-like Zinc finger" 5 16 9 At3g57530 "calcium-dependent protein kinase, putative / CDPK, putative similar to calmodulin-domain protein kinase CDPK isoform 7 [Arabidopsis thaliana] gi|1399277|gb|AAB03247" 5 16 10 At3g60300 RWD domain-containing protein contains weak similarity to RING finger protein 25 (RING finger protein AO7) (Swiss-Prot:Q9QZR0) [Mus musculus] 5 16 11 At3g60350 "armadillo/beta-catenin repeat family protein / F-box family protein contains Pfam profiles PF00514: Armadillo/beta-catenin-like repeat, PF00646: F-box domain; similar to F-box protein FBL2 (GI:6010699) [Rattus norvegicus]" 5 16 12 At3g60520 expressed protein 5 16 13 At3g60560 hypothetical protein 04.05.01.01 5 16 14 At3g60740 tubulin folding cofactor D identical to tubulin folding cofactor D GI:20514263 from [Arabidopsis thaliana] 5 16 15 At3g60800 zinc finger (DHHC type) family protein contains DHHC zinc finger domain PF01529 5 16 16 At3g60960 pentatricopeptide (PPR) repeat-containing protein contains Pfam profile PF01535: PPR repeat 5 16 17 At3g61040 "cytochrome P450 family protein similar to cytochrome P450 monooxygenase - Arabidopsis thaliana, EMBL:D78600" 5 16 18 At4g00165 protease inhibitor/seed storage/lipid transfer protein (LTP) family protein contains Pfam protease inhibitor/seed storage/LTP family domain PF00234 5 16 19 At4g00220 LOB domain protein 30 / lateral organ boundaries domain protein 30 (LBD30) identical to LOB DOMAIN 30 [Arabidopsis thaliana] GI:16660632; supported by full-length cDNA gi:16660631 5 16 20 At4g00335 "zinc finger (C3HC4-type RING finger) family protein contains Pfam profile: PF00097 zinc finger, C3HC4 type (RING finger)" 5 16 21 At4g00355 expressed protein 5 16 22 At4g00490 "beta-amylase, putative / 1,4-alpha-D-glucan maltohydrolase, putative similar to beta-amylase from SP:O64407 [Vigna unguiculata]; contains Pfam profile PF01373: Glycosyl hydrolase family 14" 5 16 23 At4g00540 myb family transcription factor 5 16 24 At4g00660 "DEAD/DEAH box helicase, putative similar to ATP-dependent RNA helicases" 5 16 25 At4g00695 hypothetical protein 5 17 1 At4g03175 protein kinase family protein contains similarity to Swiss-Prot:P51566 protein kinase AFC1 [Arabidopsis thaliana] 5 17 2 At4g03210 "xyloglucan:xyloglucosyl transferase, putative / xyloglucan endotransglycosylase, putative / endo-xyloglucan transferase, putative contains similarity to xyloglucan endo-transglycosylase-like protein (XET-1) GI:5070246 from [Medicago truncatula]" 5 17 3 At4g03360 ubiquitin family protein contains INTERPRO:IPR000626 ubiquitin domain 5 17 4 At4g03410 peroxisomal membrane protein-related contains weak similarity to Swiss-Prot:P42925 22 kDa peroxisomal membrane protein [Mus musculus] 5 17 5 At4g03560 two-pore calcium channel (TPC1) identical to two-pore calcium channel (TPC1) [Arabidopsis thaliana] gi|14041819|dbj|BAB55460 5 17 6 At4g03610 phosphonate metabolism protein-related weak similarity to PhnP protein. (Swiss-Prot:P16692) [Escherichia coli] 5 17 7 At4g03965 hypothetical protein 5 17 8 At4g04010 "Ulp1 protease family protein contains Pfam profile PF02902: Ulp1 protease family, C-terminal catalytic domain; similar to At1g32840, At2g06430, At2g15140, At2g04980, At2g14130, At3g44500, At2g15190, At3g47260, At5g34900, At3g29210, At2g02210, At3g32900" 5 17 9 At4g08770 "peroxidase, putative identical to class III peroxidase ATP38 [Arabidopsis thaliana] gi|17530568|gb|AAL40851; similar to peroxidase C2 precursor [Armoracia rusticana] SWISS-PROT: P17179; identical to cDNA class III peroxidase ATP38 GI:17530567" 5 17 10 At4g08840 pumilio/Puf RNA-binding domain-containing protein contains similarity to RNA binding protein PufA [Dictyostelium discoideum] gi|5106561|gb|AAD39751 5 17 11 At4g08980 F-box family protein (FBW2) contains similarity to N7 protein GI:3273101 from [Medicago truncatula] 5 17 12 At4g09040 "RNA recognition motif (RRM)-containing protein low similarity to enhancer binding protein-1; EBP1 [Entamoeba histolytica] GI:8163877, SP|P19682 28 kDa ribonucleoprotein, chloroplast precursor (28RNP) {Nicotiana sylvestris}; contains InterPro entry IPR000504: RNA-binding region RNP-1 (RNA recognition motif) (RRM)" 5 17 13 At4g09250 SPla/RYanodine receptor (SPRY) domain-containing protein low similarity to RanBPM [Homo sapiens] GI:15080674; contains Pfam profile PF00622: SPRY domain 5 17 14 At4g09320 nucleoside diphosphate kinase 1 (NDK1) identical to identical to Nucleoside diphosphate kinase I (NDK I) (NDP kinase I) (NDPK I) (SP:P39207) [Arabidopsis thaliana]; contains Pfam PF00334 : Nucleoside diphosphate kinase domain; 5 17 15 At4g09510 "beta-fructofuranosidase, putative / invertase, putative / saccharase, putative / beta-fructosidase, putative similar to neutral invertase [Daucus carota] GI:4200165; contains Pfam profile PF04853: Plant neutral invertase" 5 17 16 At4g09570 "calcium-dependent protein kinase, putative / CDPK, putative similar to calcium-dependent protein kinase [Arabidopsis thaliana] gi|604881|dbj|BAA04830; contains protein kinase domain, Pfam:PF00069; contains EF hand domain (calcium-binding EF-hand), Pfam:PF00036, INTERPRO:IPR002048" 5 17 17 At4g12330 cytochrome P450 family protein contains Pfam profile:PF00067 cytochrome p450 5 17 18 At4g12390 "invertase/pectin methylesterase inhibitor family protein low similarity to pectinesterase from Arabidopsis thaliana SP|Q42534, Lycopersicon esculentum SP|Q43143; contains Pfam profile PF04043: Plant invertase/pectin methylesterase inhibitor" 5 17 19 At4g12545 "protease inhibitor/seed storage/lipid transfer protein (LTP) family protein contains protease inhibitor/seed storage/LTP family domain, Pfam:PF00234" 5 17 20 At4g12600 "ribosomal protein L7Ae/L30e/S12e/Gadd45 family protein Similar to NHP2/L7Ae family proteins, see SWISSPROT:P32495 and PMID:2063628." 5 17 21 At4g12780 auxilin-related low similarity to SP|Q27974 Auxilin {Bos taurus} 5 17 22 At4g12830 "hydrolase, alpha/beta fold family protein low similarity to haloalkane dehalogenase from [Mycobacterium avium subsp. avium] GI:14422311, [Pseudomonas pavonaceae] GI:6689030; contains Pfam profile PF00561: hydrolase, alpha/beta fold family" 5 17 23 At4g13010 "oxidoreductase, zinc-binding dehydrogenase family protein low similarity to probable NADP-dependent oxidoreductase (zeta-crystallin homolog) P1 [SP|Q39172][gi:886428] and P2 [SP|Q39173][gi:886430]; contains Pfam profile PF00107: oxidoreductase, zinc-binding dehydrogenase family" 5 17 24 At4g13070 group II intron splicing factor CRS1-related contains weak similarity to CRS1 [Zea mays] gi|9837550|gb|AAG00595 5 17 25 At4g15430 early-responsive to dehydration protein-related / ERD protein-related similar to ERD4 protein (early-responsive to dehydration stress) [Arabidopsis thaliana] GI:15375406; contains Pfam profile PF02714: Domain of unknown function DUF221 5 18 1 At4g15480 UDP-glucoronosyl/UDP-glucosyl transferase family protein contains Pfam profile: PF00201 UDP-glucoronosyl and UDP-glucosyl transferase 5 18 2 At4g15650 protein kinase-related contains weak similarity to protein kinase [Dictyostelium discoideum] gi|551446|emb|CAA86053 5 18 3 At4g15710 hypothetical protein 5 18 4 At4g15840 expressed protein 5 18 5 At4g15900 "PP1/PP2A phosphatases pleiotropic regulator 1 (PRL1) identical to PP1/PP2A phosphatases pleiotropic regulator PRL1 (SP:Q42384) [Arabidopsis thaliana], PRL1 [Arabidopsis thaliana] GI:577733; contains Pfam PF00400: WD domain, G-beta repeat (7 copies)" 5 18 6 At4g16060 expressed protein 5 18 7 At4g16110 two-component responsive regulator family protein / response regulator family protein similar to ARR2 protein GI:4210451 from [Arabidopsis thaliana]; contains Pfam profile: PF00072 response regulator receiver domain 5 18 8 At4g18580 expressed protein 5 18 9 At4g18600 expressed protein 5 18 10 At4g18760 "leucine-rich repeat family protein contains leucine rich-repeat domains Pfam:PF00560, INTERPRO:IPR001611" 5 18 11 At4g18820 expressed protein 5 18 12 At4g18980 "expressed protein contains Pfam profile PF04520: Protein of unknown function, DUF584" 5 18 13 At4g19006 "26S proteasome regulatory subunit, putative (RPN9) similar to 26S proteasome subunit p40.5 [Homo sapiens] gi|3618343|dbj|BAA33214" 5 18 14 At4g19150 "ankyrin repeat family protein contains ankyrin repeats, Pfam:PF00023" 5 18 15 At4g19190 "zinc knuckle (CCHC-type) family protein contains Pfam domain, PF00098: Zinc knuckle" 5 18 16 At4g22050 aspartyl protease family protein contains Pfam profile: PF00026 eukaryotic aspartyl protease 5 18 17 At4g22110 "alcohol dehydrogenase, putative similar to alcohol dehydrogenase ADH GI:7705214 from [Lycopersicon esculentum]; contains Pfam zinc-binding dehydrogenase domain PF00107" 5 18 18 At4g22230 expressed protein 5 18 19 At4g22260 "alternative oxidase, putative / immutans protein (IM) identical to IMMUTANS from Arabidopsis thaliana [gi:4138855]; contains Pfam profile PF01786 alternative oxidase" 5 18 20 At4g22400 expressed protein 5 18 21 At4g22460 protease inhibitor/seed storage/lipid transfer protein (LTP) family protein contains Pfam profile: PF00234 protease inhibitor/seed storage/LTP family 5 18 22 At4g22650 "hypothetical protein various predicted proteins, Arabidopsis thaliana" 5 18 23 At4g22710 cytochrome P450 family protein contains Pfam profile: PF00067 cytochrome p450 5 18 24 At4g25270 pentatricopeptide (PPR) repeat-containing protein contains INTERPRO:IPR002885 PPR repeats 5 18 25 At4g25315 Expressed protein 5 19 1 At4g25450 ABC transporter family protein similar to multidrug resistance protein 2 SP:P21440 from [Mus musculus] 5 19 2 At4g25510 hypothetical protein 5 19 3 At4g25680 expressed protein 5 19 4 At4g25720 glutamine cyclotransferase family protein contains Pfam profile: PF05096 glutamine cyclotransferase 5 19 5 At4g25890 "60S acidic ribosomal protein P3 (RPP3A) acidic ribosomal protein P3a - maize, PIR2:T02037" 5 19 6 At4g25950 "vacuolar ATP synthase, putative / V-ATPase, putative / vacuolar proton pump, putative similar to Swiss-Prot:O82629 vacuolar ATP synthase subunit G 2 (V-ATPase G subunit 2, Vacuolar proton pump G subunit 2) [Arabidopsis thaliana]" 5 19 7 At4g28460 hypothetical protein 5 19 8 At4g28510 "prohibitin, putative similar to SP|P24142 Prohibitin (B-cell receptor associated protein 32) (BAP 32) {Rattus norvegicus}; contains Pfam profile PF01145: SPFH domain / Band 7 family" 5 19 9 At4g28670 "protein kinase family protein contains Pfam domain, PF00069: Protein kinase domain" 5 19 10 At4g28706 pfkB-type carbohydrate kinase family protein contains Pfam profile: PF00294 pfkB family carbohydrate kinase 5 19 11 At4g28870 hypothetical protein 5 19 12 At4g28940 nucleosidase-related contains weak similarity to MTA/SAH nucleosidase (P46). (Swiss-Prot:P24247) [Shigella flexneri] 5 19 13 At4g29110 hypothetical protein 5 19 14 At4g29160 "SNF7 family protein contains Pfam domain, PF03357: SNF7 family" 5 19 15 At4g31720 transcription initiation factor IID (TFIID) 23-30kDa subunit (TAF2H) family protein contains Pfam profile: PF03540 transcription initiation factor TFIID 23-30kDa 5 19 16 At4g31780 "1,2-diacylglycerol 3-beta-galactosyltransferase, putative / monogalactosyldiacylglycerol synthase, putative / MGDG synthase, putative similar to MGD synthase type A from Arabidopsis thaliana [gi:9927297], similar to monogalactosyldiacylglycerol synthase, Cucumis sativus, PID:g1805254" 5 19 17 At4g31890 armadillo/beta-catenin repeat family protein contains Pfam profile: PF00514 armadillo/beta-catenin-like repeat 5 19 18 At4g31950 "cytochrome P450 family protein cytochrome P450 monooxygenase, Pisum sativum, PATCHX:G894153" 5 19 19 At4g32090 hypothetical protein 5 19 20 At4g32140 expressed protein 5 19 21 At4g32320 peroxidase family protein similar to L-ascorbate peroxidase [Arabidopsis thaliana] gi|1523789|emb|CAA66925; contains Pfam profile PF00141: Peroxidase 5 19 22 At4g32375 glycoside hydrolase family 28 protein / polygalacturonase (pectinase) family protein similar to polygalacturonase [Lycopersicon esculentum] GI:4325090; contains Pfam profile PF00295: Polygalacturonase (pectinase) 5 19 23 AT5G57480 PC-1 5 19 24 3XSSC PC-1 5 19 25 AT1G29930 PC-1 5 20 1 3XSSC PC-1 5 20 2 AT3G44150 PC-1 5 20 3 3XSSC PC-1 5 20 4 AT4G00810 PC-1 5 20 5 3XSSC PC-1 5 20 6 At4g34920 1-phosphatidylinositol phosphodiesterase-related contains weak similarity to 1-phosphatidylinositol phosphodiesterase precursor (EC 3.1.4.10) (Phosphatidylinositol-specific phospholipase C) (PI-PLC). (Swiss-Prot:P34024) [Listeria monocytogenes] 5 20 7 At4g34980 "subtilase family protein similar to SBT1, a subtilase from tomato plants GI:1771160 from [Lycopersicon esculentum]" 5 20 8 At4g35130 pentatricopeptide (PPR) repeat-containing protein contains Pfam profile PF01535: PPR repeat 5 20 9 At4g35180 amino acid transporter family protein similar to amino acid permease 1 GI:976402 from [Nicotiana sylvestris]; contains Pfam profile PF01490: Transmembrane amino acid transporter protein 5 20 10 At4g35335 "nucleotide-sugar transporter family protein similar to SP|O77592 UDP N-acetylglucosamine transporter (Golgi UDP-GlcNAc transporter) {Canis familiaris}, SP|P78382 CMP-sialic acid transporter {Homo sapiens}; contains Pfam profile PF04142: Nucleotide-sugar transporter" 5 20 11 At4g35380 guanine nucleotide exchange family protein similar to guanine nucleotide exchange factor [Homo sapiens] GI:5456754; contains Pfam profile PF01369: Sec7 domain 5 20 12 At4g35520 "DNA mismatch repair family protein similar to SP|Q9UHC1 DNA mismatch repair protein Mlh3 (MutL protein homolog 3) {Homo sapiens}; contains Pfam profiles PF02518: ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain protein, PF01119: DNA mismatch repair protein, C-terminal domain" 5 20 13 At4g35580 no apical meristem (NAM) family protein similar to TIP [Arabidopsis thaliana] GI:9408601; contains Pfam profile PF02365: No apical meristem (NAM) protein 5 20 14 At4g38225 expressed protein 5 20 15 At4g38250 amino acid transporter family protein low similarity to lysosomal amino acid transporter 1 [Rattus norvegicus] GI:14571904; contains Pfam profile PF01490: Transmembrane amino acid transporter protein 5 20 16 At4g38430 expressed protein contains Pfam profile PF03759: Domain of unknown function (DUF315) 5 20 17 At4g38495 expressed protein 5 20 18 At4g38660 "thaumatin, putative similar to thaumatin-like protein [Arabidopsis thaliana] GI:2435406, thaumatin-like protein precursor [Pyrus pyrifolia] GI:3241854; contains Pfam profile PF00314: Thaumatin family" 5 20 19 At4g38730 expressed protein 5 20 20 At4g38900 "bZIP protein vsf-1 protein, Lycopersicon esculentum, PIR2:S52203" 5 20 21 At4g38930 ubiquitin fusion degradation UFD1 family protein similar to SP|P70362 Ubiquitin fusion degradation protein 1 homolog (UB fusion protein 1) {Mus musculus}; contains Pfam profile PF03152: Ubiquitin fusion degradation protein UFD1 5 20 22 At5g02350 DC1 domain-containing protein contains Pfam profile PF03107: DC1 domain 5 20 23 At5g02410 DIE2/ALG10 family contains Pfam PF04922: DIE2/ALG10 family 5 20 24 At5g02560 "histone H2A, putative similar to histone H2A from Pisum sativum SP|P25470, Zea mays SP|P40280, Petroselinum crispum SP|P19177; contains Pfam profile PF00125 Core histone H2A/H2B/H3/H4" 5 20 25 At5g02600 "heavy-metal-associated domain-containing protein low similarity to gi:3168840 copper homeostasis factor; contains Pfam heavy-metal-associated domain PF00403; predicted proteins, Arabidopsis thaliana" 5 21 1 At5g02740 expressed protein 5 21 2 At5g02800 "protein kinase family protein contains protein kinase domain, Pfam:PF00069" 5 21 3 At5g02960 "40S ribosomal protein S23 (RPS23B) ribosomal protein S23, Fragaria x ananassa, PIR:S56673" 5 21 4 At5g03020 "kelch repeat-containing F-box family protein similar to SKP1 interacting partner 6 [Arabidopsis thaliana] GI:10716957; contains Pfam profiles PF01344: Kelch motif, PF00646: F-box domain" 5 21 5 At5g05700 arginine-tRNA-protein transferase 1 / arginyltransferase 1 / arginyl-tRNA-protein transferase 1 (ATE1) identical to SP|Q9ZT48 Arginine-tRNA-protein transferase 1 (EC 2.3.2.8) (R-transferase 1) (Arginyltransferase 1) (Arginyl-tRNA--protein transferase 1) {Arabidopsis thaliana} 5 21 6 At5g05740 peptidase M50 family protein / sterol-regulatory element binding protein (SREBP) site 2 protease family protein contains Pfam PF02163: Sterol-regulatory element binding protein (SREBP) site 2 protease 5 21 7 At5g05920 deoxyhypusine synthase almost identical to deoxyhypusine synthase GI:15431345 from [Arabidopsis thaliana] 5 21 8 At5g05960 protease inhibitor/seed storage/lipid transfer protein (LTP) family protein contains Pfam protease inhibitor/seed storage/LTP family domain PF00234 5 21 9 At5g06110 "DNAJ heat shock N-terminal domain-containing protein / cell division protein-related similar to GlsA [Volvox carteri f. nagariensis] GI:4633129; contains Pfam profiles PF00226 DnaJ domain, PF00249 Myb-like DNA-binding domain" 5 21 10 At5g06150 cyclin 1b (CYC1b) identical to cyclin [Arabidopsis thaliana] GI:1360646 5 21 11 At5g06280 expressed protein similar to unknown protein (pir||T08447) 5 21 12 At5g06340 "diadenosine 5',5'''-P1,P4-tetraphosphate hydrolase, putative similar to diadenosine 5',5'''-P1,P4-tetraphosphate hydrolase from [Lupinus angustifolius] GI:1888557, [Hordeum vulgare subsp. vulgare] GI:2564253; contains Pfam profile PF00293: NUDIX domain" 5 21 13 At5g09420 "chloroplast outer membrane translocon subunit, putative similar to component of chloroplast outer membrane translocon Toc64 [Pisum sativum] GI:7453538; contains Pfam profiles PF01425: Amidase, PF00515: TPR Domain" 5 21 14 At5g09480 "hydroxyproline-rich glycoprotein family protein contains proline-rich extensin domains, INTERPRO:IPR002965; Common family members At5g09530, At5g09520, At1g44222 [Arabidopsis thaliana]" 5 21 15 At5g09660 "malate dehydrogenase, glyoxysomal identical to SP|Q9ZP05; identical to cDNA microbody NAD-dependent malate dehydrogenase GI:3929650" 5 21 16 At5g09710 magnesium transporter CorA-like family protein contains Pfam profile PF01544: CorA-like Mg2+ transporter protein 5 21 17 At5g09890 "protein kinase, putative contains protein kinase domain, Pfam:PF00069" 5 21 18 At5g09930 ABC transporter family protein 5 21 19 At5g10070 "RNase L inhibitor protein-related contains Pfam profiles PF04034: Domain of unknown function (DUF367), PF04068: Possible metal-binding domain in RNase L inhibitor, RLI" 5 21 20 At5g10120 ethylene insensitive 3 family protein contains Pfam profile: PF04873 ethylene insensitive 3 5 21 21 At5g13260 expressed protein 5 21 22 At5g13300 ARF GTPase-activating domain-containing protein similar to GCN4-complementing protein (GCP1) GI:6465806 from [Arabidopsis thaliana] 5 21 23 At5g13480 "WD-40 repeat family protein similar to WD-repeat protein WDC146 (SP:Q9C0J8|) {Homo sapiens}; contains 3 weak Pfam PF00400: WD domain, G-beta repeats;" 5 21 24 At5g13520 peptidase M1 family protein similar to SP|P09960 Leukotriene A-4 hydrolase (EC 3.3.2.6) (LTA-4 hydrolase) {Homo sapiens}; contains Pfam profile PF01433: Peptidase family M1 5 21 25 At5g13670 nodulin MtN21 family protein similar to MtN21 GI:2598575 (root nodule development) from [Medicago truncatula] 5 22 1 At5g13730 "RNA polymerase sigma subunit SigD (sigD) / sigma-like factor (SIG4) identical to RNA polymerase sigma subunit SigD [Arabidopsis thaliana] GI:4972296, sigma-like factor [Arabidopsis thaliana] GI:3983260; contains Pfam profiles PF04545: Sigma-70, region 4, PF04539: Sigma-70 region 3, PF04542: Sigma-70 region 2" 5 22 2 At5g13890 expressed protein contains Pfam profile PF04819: Family of unknown function (DUF716) (Plant viral-response family) 5 22 3 At5g13950 expressed protein 5 22 4 At5g16710 "dehydroascorbate reductase, putative Strong similarity to dehydroascorbate reductase [Spinacia oleracea] gi:10952512 gb:AAG24945" 5 22 5 At5g16760 "inositol 1,3,4-trisphosphate 5/6-kinase identical to inositol 1,3,4-trisphosphate 5/6-kinase GI:3396079 from [Arabidopsis thaliana]" 5 22 6 At5g16890 exostosin family protein contains Pfam profile: PF03016 Exostosin family 5 22 7 At5g16950 expressed protein 5 22 8 At5g17120 hypothetical protein 5 22 9 At5g17180 hypothetical protein 5 22 10 At5g17330 glutamate decarboxylase 1 (GAD 1) sp|Q42521 5 22 11 At5g17390 universal stress protein (USP) family protein contains Pfam profile: PF00582 universal stress protein family 5 22 12 At5g19950 expressed protein 5 22 13 At5g20010 Ras-related GTP-binding nuclear protein (RAN-1) identical to GTP-binding nuclear protein RAN-1 SP:P41916 from [Arabidopsis thaliana] 5 22 14 At5g20160 "ribosomal protein L7Ae/L30e/S12e/Gadd45 family protein Similar to NHP2/L7Ae family proteins, see SWISSPROT:P32495 and PMID:2063628." 5 22 15 At5g20190 expressed protein 5 22 16 At5g20380 transporter-related low similarity to vesicular glutamate transporter 3 [Rattus norvegicus] GI:21685382 5 22 17 At5g20440 mob1/phocein family protein contains Pfam profile: PF03637 mob1/phocein family 5 22 18 At5g20610 expressed protein 5 22 19 At5g20660 "24 kDa vacuolar protein, putative similar to 24 kDa vacuolar protein VP24 [Ipomoea batatas] gi|5821406|dbj|BAA83809" 5 22 20 At5g23960 terpene synthase/cyclase family protein non-consensus TA donor splice site at exon 4 5 22 21 At5g24020 septum site-determining protein (MIND) identical to MinD [Arabidopsis thaliana] GI:6759277; contains Pfam PF00991 : ParA family ATPase 5 22 22 At5g24170 expressed protein 5 22 23 At5g24230 expressed protein 5 22 24 At5g24340 3'-5' exonuclease domain-containing protein contains Pfam profile PF01612: 3'-5' exonuclease 5 22 25 At5g24390 RabGAP/TBC domain-containing protein similar to GTPase activating protein [Yarrowia lipolytica] GI:2370595; contains Pfam profile PF00566: TBC domain 5 23 1 At5g24570 expressed protein 5 23 2 At5g24610 expressed protein similar to unknown protein (emb|CAB62459.1) 5 23 3 At5g27550 "kinesin motor protein-related kinesin-like heavy chain - Arabidopsis thaliana, EMBL:AF080249" 5 23 4 At5g27606 hypothetical protein 5 23 5 At5g27780 auxin-responsive family protein similar to Auxin-induced protein 10A5 (SP:P33079) [Glycine max] 5 23 6 At5g27840 serine/threonine protein phosphatase PP1 isozyme 8 (TOPP8) identical to SP|O82734 Serine/threonine protein phosphatase PP1 isozyme 8 (EC 3.1.3.16) {Arabidopsis thaliana} 5 23 7 At5g27990 "expressed protein predicted proteins, Saccharomyces cerevisiae and Schizosaccharomyces pombe" 5 23 8 At5g28050 cytidine/deoxycytidylate deaminase family protein similar to SP|O34598 Guanine deaminase (EC 3.5.4.3) (Guanase) (Guanine aminase) (Guanine aminohydrolase) (GAH) (GDEase) {Bacillus subtilis}; contains Pfam profile PF00383: Cytidine and deoxycytidylate deaminase zinc-binding region 5 23 9 At5g28237 "tryptophan synthase, beta subunit, putative similar to SP|P14671 Tryptophan synthase beta chain 1, chloroplast precursor (EC 4.2.1.20) {Arabidopsis thaliana}; contains Pfam profile PF00291: Pyridoxal-phosphate dependent enzyme" 5 23 10 At5g28300 "trihelix DNA-binding protein, putative similar to GT-2 factor [Arabidopsis thaliana GI:416490" 5 23 11 At5g36230 eIF4-gamma/eIF5/eIF2-epsilon domain-containing protein low similarity to SP|Q13144 Translation initiation factor eIF-2B epsilon subunit (eIF-2B GDP-GTP exchange factor) {Homo sapiens}; contains Pfam profile PF02020: eIF4-gamma/eIF5/eIF2-epsilon 5 23 12 At5g36290 expressed protein contains Pfam profile PF01169: Uncharacterized protein family UPF0016 5 23 13 At5g36850 "hypothetical protein similar to At1g27780, At2g05560, At4g05280, At3g24385, At3g42590, At2g12110, At2g12100" 5 23 14 At5g36905 RNase H domain-containing protein low similarity to reverse transcriptase [Arabidopsis thaliana] GI:976278; contains Pfam profile PF00075: RNase H 5 23 15 At5g37070 "expressed protein contains Pfam profile PF04398: Protein of unknown function, DUF538" 5 23 16 At5g37130 tetratricopeptide repeat (TPR)-containing protein contains Pfam profile PF00515 TPR Domain 5 23 17 At5g37300 expressed protein 5 23 18 At5g37370 pre-mRNA splicing factor PRP38 family protein (SRL1) contains Pfam profile PF03371: PRP38 family 5 23 19 At5g40220 MADS-box family protein contains Pfam profile PF00319: SRF-type transcription factor (DNA-binding and dimerisation domain); MADS-box protein AGL43 5 23 20 At5g40280 protein farnesyltransferase beta subunit (ERA1) identical to GI:8347240 [SWISS-PROT:Q38920]; WIGGUM mutant 5 23 21 At5g40460 expressed protein 5 23 22 At5g40520 expressed protein 5 23 23 At5g40645 "nitrate-responsive NOI protein, putative similar to nitrate-induced NOI protein [Zea mays] GI:2642213" 5 23 24 At5g40700 "expressed protein predicted protein, Arabidopsis thaliana" 5 23 25 At5g40870 "uracil phosphoribosyltransferase, putative / UMP pyrophosphorylase, putative / UPRTase, putative similar to SP|O65583 Uracil phosphoribosyltransferase (EC 2.4.2.9) (UMP pyrophosphorylase) (UPRTase) {Arabidopsis thaliana}; contains Pfam profile PF00485: Phosphoribulokinase / Uridine kinase family" 5 24 1 At5g40940 hypothetical protein 5 24 2 At5g43610 "sucrose transporter-related / sucrose-proton symporter-related similar to sucrose-proton symporter SUC1 [Arabidopsis thaliana] GI:407094, sucrose transporter [Arabidopsis thaliana] GI:12057172; contains Pfam profile PF00083: major facilitator superfamily protein" 5 24 3 At5g43670 "transport protein, putative similar to Swiss-Prot:Q15436 protein transport protein Sec23A [Homo sapiens]" 5 24 4 At5g43850 "acireductone dioxygenase (ARD/ARD') family protein similar to iron-deficiency induced gene [Hordeum vulgare] GI:14522834, SIPL [Homo sapiens] GI:16551383; contains Pfam profile PF03079: ARD/ARD' family" 5 24 5 At5g43910 pfkB-type carbohydrate kinase family protein contains Pfam profile: PF00294 pfkB family carbohydrate kinase 5 24 6 At5g44040 expressed protein similar to unknown protein (gb|AAD10667.1) 5 24 7 At5g44100 "casein kinase, putative similar to dual specificity kinase 1 gi|1216484|gb|AAB47968" 5 24 8 At5g44270 hypothetical protein 5 24 9 At5g44310 late embryogenesis abundant domain-containing protein / LEA domain-containing protein low similarity to 51 kDa seed maturation protein [Glycine max] GI:414977; contains Pfam profile PF02987: Late embryogenesis abundant protein 5 24 10 At5g46830 basic helix-loop-helix (bHLH) family protein 5 24 11 At5g46880 homeobox-leucine zipper family protein / lipid-binding START domain-containing protein similar to HD-Zip homeo domain OCL4 protein GI:8920425 from [Zea mays]; contains Pfam PF00046: Homeobox domain and Pfam PF01852: START domain 5 24 12 At5g47050 expressed protein 5 24 13 At5g47090 expressed protein 5 24 14 At5g47250 "disease resistance protein (CC-NBS-LRR class), putative domain signature CC-NBS-LRR exists, suggestive of a disease resistance protein." 5 24 15 At5g47310 expressed protein 5 24 16 At5g47455 expressed protein 5 24 17 At5g47470 nodulin MtN21 family protein integral membrane protein domain (PF00892); similar to MtN21 GI:2598575 (root nodule development) from [Medicago truncatula] 5 24 18 At5g50120 transducin family protein / WD-40 repeat family protein Similar to En/Spm-like transposon protein (gi:2739374)[Arabidopsis thaliana]; similar to GTP-binding regulatory protein and WD-repeat protein; contains 7 WD-40 repeats 5 24 19 At5g50180 "protein kinase, putative similar to protein kinase ATN1 [Arabidopsis thaliana] gi|1054633|emb|CAA63387" 5 24 20 At5g50335 expressed protein 5 24 21 At5g50380 exocyst subunit EXO70 family protein contains Pfam domain PF03081: Exo70 exocyst complex subunit; 5 24 22 At5g50560 expressed protein 5 24 23 At5g50610 hypothetical protein 5 24 24 At5g50820 no apical meristem (NAM) family protein contains Pfam PF02365: No apical meristem (NAM) domain; similar to unknown protein (pir||T07182) 5 24 25 At5g50860 protein kinase family protein contains PF00069: Protein kinase domain 5 25 1 At5g53590 auxin-responsive family protein similar to indole-3-acetic acid induced protein ARG7 (SP:P32295) [Vigna radiata] 5 25 2 At5g53660 expressed protein 5 25 3 At5g53840 F-box family protein (FBL13) contains F-box domain PF:00646 5 25 4 At5g53870 plastocyanin-like domain-containing protein contains similarity to SP|Q02917 Early nodulin 55-2 precursor {Glycine max}; PF02298: Plastocyanin-like domain 5 25 5 At5g54030 DC1 domain-containing protein contains Pfam profile PF03107: DC1 domain 5 25 6 At5g54070 heat shock transcription factor family protein contains Pfam profile: PF00447 HSF-type DNA-binding domain 5 25 7 At5g54220 hypothetical protein 5 25 8 At5g54280 "myosin heavy chain, putative similar to myosin [Arabidopsis thaliana] gi|499045|emb|CAA84065" 5 25 9 At5g57000 expressed protein similar to unknown protein (gb|AAF21159.1) 5 25 10 At5g57040 lactoylglutathione lyase family protein / glyoxalase I family protein contains Pfam PF00903: glyoxalase family protein 5 25 11 At5g57170 macrophage migration inhibitory factor family protein / MIF family protein contains Pfam profile: PF01187 Macrophage migration inhibitory factor(MIF) 5 25 12 At5g57210 microtubule-associated protein-related contains some similarity to microtubule-associated protein GI:5032258 from [Arabidopsis thaliana]; contains Pfam profile PF00566: TBC domain 5 25 13 At5g57370 expressed protein low similarity to nucleic acid binding protein [Homo sapiens] GI:431953 5 25 14 At5g57440 haloacid dehalogenase-like hydrolase family protein similar to SP|Q08623 GS1 protein {Homo sapiens}; contains InterPro accession IPR005834: Haloacid dehalogenase-like hydrolase 5 25 15 At5g57600 expressed protein 5 25 16 At5g57650 eukaryotic translation initiation factor-related contains weak similarity to Swiss-Prot:Q38884 eukaryotic translation initiation factor 3 subunit 2 (eIF-3 beta) (eIF3 p36) (eIF3i) (TGF-beta receptor interacting protein 1) (TRIP-1) [Arabidopsis thaliana] 5 25 17 At5g60190 "Ulp1 protease family protein low similarity to sentrin/SUMO-specific protease [Homo sapiens] GI:6906859; contains Pfam profile PF02902: Ulp1 protease family, C-terminal catalytic domain" 5 25 18 At5g60230 "tRNA-splicing endonuclease, putative contains similarity to Swiss-Prot:P16658 tRNA-splicing endonuclease subunit SEN2 (tRNA-intron endonuclease) [Saccharomyces cerevisiae]; contains Pfam domain PF01974: tRNA intron endonuclease, catalytic C-terminal domain" 5 25 19 At5g60400 expressed protein 5 25 20 At5g60430 expressed protein 5 25 21 At5g60590 yrdC protein-related 5 25 22 At5g60640 "thioredoxin family protein similar to protein disulfide isomerase GI:5902592 from [Volvox carteri f. nagariensis], GI:2708314 from Chlamydomonas reinhardtii; contains Pfam profile: PF00085 Thioredoxin" 5 25 23 At5g60800 heavy-metal-associated domain-containing protein similar to farnesylated protein ATFP3 [GI:4097547]; contains Pfam profile PF00403: Heavy-metal-associated domain 5 25 24 At5g60860 "Ras-related GTP-binding protein, putative similar to GTP-binding protein GI:303742 from [Pisum sativum]" 5 25 25 At5g63540 expressed protein ; expression supported by MPSS 5 26 1 At5g63595 "flavonol synthase, putative similar to SP|Q96330 Flavonol synthase 1 (EC 1.14.11.-) (FLS1) from Arabidopsis thaliana" 5 26 2 At5g63770 "diacylglycerol kinase, putative similar to diacylglycerol kinase, theta (diglyceride kinase, DGK- theta, DAG kinase theta). [Homo sapiens] SWISS-PROT:P52824" 5 26 3 At5g63830 zinc finger (HIT type) family protein contains Pfam profile: PF04438 HIT zinc finger 5 26 4 At5g63990 "3'(2'),5'-bisphosphate nucleotidase, putative / inositol polyphosphate 1-phosphatase, putative similar to SP|Q42546 3'(2'),5'-bisphosphate nucleotidase (EC 3.1.3.7) {Arabidopsis thaliana}; contains Pfam profile PF00459: Inositol monophosphatase family" 5 26 5 At5g64030 dehydration-responsive protein-related similar to early-responsive to dehydration stress ERD3 protein [Arabidopsis thaliana] GI:15320410; contains Pfam profile PF03141: Putative methyltransferase 5 26 6 At5g64200 "arginine/serine-rich splicing factor SC35 contains similarity to splicing factor; contains Pfam profile PF00076: RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)" 5 26 7 At5g64240 latex-abundant family protein (AMC3) / caspase family protein contains similarity to latex-abundant protein [Hevea brasiliensis] gb:AAD13216; contains Pfam profile PF00656: ICE-like protease (caspase) p20 domain 5 26 8 At5g66650 "expressed protein contains Pfam domain, PF04678: Protein of unknown function, DUF607" 5 26 9 At5g66700 homeobox-leucine zipper family protein similar to Homeobox-leucine zipper protein HAT5 (HD-ZIP protein 5) (SP:Q02283) [Arabidopsis thaliana]; contains Pfam PF00046: Homeobox domain 5 26 10 At5g66850 "protein kinase family protein contains Pfam domain, PF00069: Protein kinase domain; identical to cDNA MAP3K gamma protein kinase GI:2315152" 5 26 11 At5g66910 "disease resistance protein (CC-NBS-LRR class), putative domain signature CC-NBS-LRR exists, suggestive of a disease resistance protein." 5 26 12 At5g67050 lipase class 3 family protein similar to lipase precursor [Rhizopus arrhizus] GI:6942320; contains Pfam profile PF01764: Lipase 5 26 13 At5g67110 basic helix-loop-helix (bHLH) family protein contains Pfam profile: PF00010 helix-loop-helix DNA-binding domain 5 26 14 At5g67260 "cyclin family protein similar to cyclin D3.1 protein [Nicotiana tabacum] GI:4160300; contains Pfam profiles PF00134: Cyclin, N-terminal domain, PF02984: Cyclin, C-terminal domain" 5 26 15 At5g67320 WD-40 repeat family protein strong similarity to unknown protein (ref|NP_005638.1) 5 26 16 At1g32585 VQ motif-containing protein-related contains weak similarity to Pfma:PF05678 VQ motif 5 26 17 At1g32660 F-box family protein contains Pfam profile: PF00646 F-box domain 5 26 18 At1g32830 "hypothetical protein similar to At2g04970, At2g15200, At2g14140, At3g30450, At4g03990, At5g34895, At3g47270, At2g02200" 5 26 19 At1g32900 "starch synthase, putative similar to starch synthase SP:Q42857 from [Ipomoea batatas]" 5 26 20 At1g33055 expressed protein 5 26 21 At1g33100 MATE efflux family protein similar to ripening regulated protein DDTFR18 [Lycopersicon esculentum] GI:12231296; contains Pfam profile PF01554: Uncharacterized membrane protein family 5 26 22 At1g33320 "cystathionine gamma-synthase, chloroplast, putative / O-succinylhomoserine (Thiol)-lyase, putative strong similarity to SP|P55217 Cystathionine gamma-synthase, chloroplast precursor (EC 4.2.99.9) (CGS) (O-succinylhomoserine (Thiol)-lyase) {Arabidopsis thaliana}; contains Pfam profile PF01053: Cys/Met metabolism PLP-dependent enzyme" 5 26 23 At1g33400 tetratricopeptide repeat (TPR)-containing protein contains Pfam profile PF00515 TPR Domain 5 26 24 Blank Blank 5 26 25 Blank Blank 6 1 1 At5g49910 heat shock protein 70 / HSP70 (HSC70-7) identical to heat shock protein 70 [Arabidopsis thaliana] GI:6746592 6 1 2 At3g18780 actin 2 (ACT2) identical to SP|Q96292 Actin 2 {Arabidopsis thaliana}; nearly identical to SP|Q96293 Actin 8 [Arabidopsis thaliana] GI:1669387 and to At1g49240 6 1 3 Alien5 Control: Stratagene Spotreport Alien Oligo 6 1 4 At1g64740 tubulin alpha-1 chain (TUA1) nearly identical to SP|P11139 Tubulin alpha-1 chain {Arabidopsis thaliana} 6 1 5 atc07 Randomly generated negative control 6 1 6 Alien1 Control: Stratagene Spotreport Alien Oligo 6 1 7 At3g18780 actin 2 (ACT2) identical to SP|Q96292 Actin 2 {Arabidopsis thaliana}; nearly identical to SP|Q96293 Actin 8 [Arabidopsis thaliana] GI:1669387 and to At1g49240 6 1 8 atc03 Randomly generated negative control 6 1 9 At1g03470 kinase interacting family protein similar to kinase interacting protein 1 (GI:13936326) [Petunia integrifolia] 6 1 10 At1g03540 pentatricopeptide (PPR) repeat-containing protein contains Pfam profile PF01535: PPR repeat 6 1 11 At1g03730 expressed protein similar to ESTs gb|AA605440 and gb|H37232 6 1 12 At1g03780 targeting protein-related similar to microtubule-associated protein / targeting protein for Xklp2 ((TPX2) GI:8926138) {Homo sapiens}; similar to Restricted expression proliferation associated protein 100 (p100) (Differentially expressed in lung cells 2) (DIL-2) (Targeting protein for Xklp2) (C20orf1 protein) (C20orf2 protein) (Protein FLS353)(SP:Q9ULW0) {Homo sapiens} 6 1 13 At1g03910 expressed protein low similarity to cactin [Drosophila melanogaster] GI:7673675; expression supported by MPSS 6 1 14 At1g03960 calcium-binding EF hand family protein contains Pfam profile: PF00036 EF hand 6 1 15 At1g04130 "tetratricopeptide repeat (TPR)-containing protein contains non-consensus donor splice site AT at exon 4 and acceptor splice site at exon5; Contains similarity to serine/threonine protein phosphatase gb|X83099 from S. cerevisiae, SP|O95801 Tetratricopeptide repeat protein 4 Homo sapiens; contains Pfam profile PF00515: TPR Domain" 6 1 16 At1g04170 "eukaryotic translation initiation factor 2 subunit 3, putative / eIF2S3, putative / eIF-2-gamma, putative similar to gb|U37354 from S. pombe. ESTs gb|T41979, gb|N37284 and gb|N37529 come from this gene" 6 1 17 At1g06810 "hypothetical protein contains Pfam PF04396: Protein of unknown function, DUF537" 6 1 18 At1g06890 "transporter-related low similarity to SP|Q9NTN3 UDP-glucuronic acid/UDP-N-acetylgalactosamine transporter {Homo sapiens}, SP|Q95YI5 UDP-sugar transporter UST74c {Drosophila melanogaster}, SP|Q18779 UDP-sugar transporter sqv-7 {Caenorhabditis elegans}; contains 8 predicted transmembrane domains" 6 1 19 At1g07040 expressed protein 6 1 20 At1g07110 "fructose-6-phosphate 2-kinase / fructose-2,6-bisphosphatase (F2KP) identical to fructose-6-phosphate 2-kinase/fructose-2,6-bisphosphatase (F2KP) [Arabidopsis thaliana] GI:13096098" 6 1 21 At1g07280 expressed protein 6 1 22 At1g07320 "50S ribosomal protein L4, chloroplast (CL4) identical to SP:O50061 from [Arabidopsis thaliana]" 6 1 23 At1g07460 "legume lectin family protein contains Legume lectins beta-chain signature, PROSITE:PS00307" 6 1 24 At1g07480 transcription factor IIA large subunit / TFIIA large subunit (TFIIA-L) identical to transcription factor IIA large subunit GI:2826884 from [Arabidopsis thaliana] 6 1 25 At1g09970 "leucine-rich repeat transmembrane protein kinase, putative Similar to A. thaliana receptor-like protein kinase (gb|RLK5_ARATH). ESTs gb|ATTS0475,gb|ATTS4362 come from this gene isoform contains a TG acceptor site at intron." 6 2 1 At1g10020 expressed protein 6 2 2 At1g10180 expressed protein 6 2 3 At1g10240 "far-red impaired responsive protein, putative similar to far-red impaired response protein FAR1 [Arabidopsis thaliana] gi|5764395|gb|AAD51282; contains Pfam:PF03101 domain: FAR1 family" 6 2 4 At1g10400 UDP-glucoronosyl/UDP-glucosyl transferase family protein contains Pfam profile: PF00201 UDP-glucoronosyl and UDP-glucosyl transferase 6 2 5 At1g10460 germin-like protein (GLP7) identical to germin-like protein subfamily 1 member 1 [SP|P92998]; similar to ESTs gb|T88481 and gb|AI099566 6 2 6 At1g10590 DNA-binding protein-related contains weak similarity to G-quartet DNA binding protein 3 [Tetrahymena thermophila] gi|4583503|gb|AAD25098 6 2 7 At1g10650 expressed protein 6 2 8 At1g13310 expressed protein 6 2 9 At1g13370 "histone H3, putative strong similarity to Histone H3.2, minor Medicago sativa SP|P11105, histone H3 Rubus idaeus GI:10732809; contains Pfam profile PF00125 Core histone H2A/H2B/H3/H4" 6 2 10 At1g13540 expressed protein 6 2 11 At1g13590 phytosulfokines-related similar to SP|Q9AR88 Phytosulfokines 4 precursor [Contains: Phytosulfokine-alpha (PSK- alpha) (Phytosulfokine-a); Phytosulfokine-beta (PSK-beta) (Phytosulfokine-b)] {Oryza sativa} 6 2 12 At1g13780 F-box family protein contains F-box domain Pfam:PF00646 6 2 13 At1g13860 dehydration-responsive protein-related similar to early-responsive to dehydration stress ERD3 protein [Arabidopsis thaliana] GI:15320410; contains Pfam profile PF03141: Putative methyltransferase 6 2 14 At1g14020 "expressed protein contains Pfam PF03138: Plant protein family. The function of this family of plant proteins is unknown; previously annotated as 'growth regulator protein -related' based on similarity to axi 1 protein (GB:X80301) (GI:559920) from [Nicotiana tabacum], which, due to scienitific fraud was retracted. Retraction in: Schell J. EMBO J 1999 May 17;18(10):2908. PMID:10400497." 6 2 15 At1g14110 xyloglucan fucosyltransferase family protein contains Pfam profile: PF03254 xyloglucan fucosyltransferase 6 2 16 At1g16705 p300/CBP acetyltransferase-related protein-related similar to p300/CBP acetyltransferase-related protein 2 [Arabidopsis thaliana] GI:12597461 6 2 17 At1g16760 "protein kinase family protein contains protein kinase domain, Pfam:PF00069" 6 2 18 At1g16890 "ubiquitin-conjugating enzyme, putative nearly identical to ubiquitin-conjugating enzyme E2 [Catharanthus roseus] GI:5381319; contains Pfam profile PF00179: Ubiquitin-conjugating enzyme" 6 2 19 At1g16930 F-box family protein contains F-box domain Pfam:PF00646 6 2 20 At1g17120 amino acid permease family protein low similarity to SP|O43246 Cationic amino acid transporter-4 (CAT-4) {Homo sapiens}; contains Pfam profile PF00324: Amino acid permease 6 2 21 At1g17170 "glutathione S-transferase, putative One of three repeated putative glutathione transferases. 72% identical to glutathione transferase [Arabidopsis thaliana] (gi|4006934)" 6 2 22 At1g17345 auxin-responsive protein-related similar to GP:10185820 auxin-induced protein TGSAUR22 {Tulipa gesneriana} 6 2 23 At1g17400 hypothetical protein 6 2 24 At1g20290 hypothetical protein 6 2 25 At1g20350 "mitochondrial import inner membrane translocase subunit Tim17, putative similar to SP|Q9SP35 Mitochondrial import inner membrane translocase subunit TIM17 {Arabidopsis thaliana}; contains Pfam profile PF02466: Mitochondrial import inner membrane translocase subunit Tim17" 6 3 1 At1g20510 4-coumarate--CoA ligase family protein / 4-coumaroyl-CoA synthase family protein similar to SP|P14912 and SP|P14913 from Petroselinum crispum; contains Pfam AMP-binding enzyme domain PF00501 6 3 2 At1g20570 tubulin family protein 6 3 3 At1g20710 homeobox-leucine zipper family protein similar to homeodomain protein PALE-2 (GI:20152544) [Arabidopsis thaliana]; contains Pfam profile: PF00046 homeobox domain 6 3 4 At1g20770 expressed protein 6 3 5 At1g20925 "auxin efflux carrier family protein contains auxin efflux carrier domain, Pfam:PF03547" 6 3 6 At1g20980 SPL1-Related2 protein (SPL1R2) strong similarity to SPL1-Related2 protein [Arabidopsis thaliana] GI:6006427; contains Pfam profile PF03110: SBP domain 6 3 7 At1g23670 expressed protein contains Pfam profile PF02713: Domain of unknown function DUF220 6 3 8 At1g23710 expressed protein 6 3 9 At1g23860 "splicing factor RSZp21 (RSZP21) / 9G8-like SR protein (SRZ21) nearly identical to 9G8-like splicing factor SRZ21 [Arabidopsis thaliana] GI:3435096, RSZp21 protein [Arabidopsis thaliana] GI:2582643" 6 3 10 At1g23900 "gamma-adaptin, putative similar to SP|O43747 Adapter-related protein complex 1 gamma 1 subunit (Gamma-adaptin) (Clathrin assembly protein complex 1 gamma-1 large chain) {Homo sapiens}; contains Pfam profiles PF01602: Adaptin N terminal region, PF02883: Adaptin C-terminal domain" 6 3 11 At1g24050 expressed protein 6 3 12 At1g24120 "DNAJ heat shock protein, putative similar to Altered Response to Gravity [Arabidopsis thaliana] GI:4249662; contains Pfam profile PF00226 DnaJ domain" 6 3 13 At1g24265 expressed protein 6 3 14 At1g24300 GYF domain-containing protein contains Pfam profile: PF02213 GYF domain 6 3 15 At1g28030 "oxidoreductase, 2OG-Fe(II) oxygenase family protein similar to GS-AOP loci [GI:16118889, GI:16118887, GI:16118891, GI:16118893]; contains PF03171 2OG-Fe(II) oxygenase superfamily domain" 6 3 16 At1g28090 polynucleotide adenylyltransferase family protein low similarity to SP|P13685 Poly(A) polymerase (EC 2.7.7.19) {Escherichia coli O157:H7}; contains Pfam profile PF01743: polyA polymerase family protein 6 3 17 At1g28210 "DNAJ heat shock protein, putative strong similarity to mitochondrial DnaJ protein (AtJ1) GI:564030 from [Arabidopsis thaliana]; contains Pfam profiles PF00226: DnaJ domain, PF01556: DnaJ C terminal region, PF00684: DnaJ central domain (4 repeats); identical to cDNA DnaJ homolog AtJ1 (atj) GI:564029" 6 3 18 At1g28260 expressed protein 6 3 19 At1g28390 "protein kinase family protein contains protein kinase domain, Pfam:PF00069" 6 3 20 At1g28410 expressed protein 6 3 21 At1g28570 "GDSL-motif lipase, putative similar to lipase [Arabidopsis thaliana] GI:1145627; contains InterPro Entry IPR001087 Lipolytic enzyme, G-D-S-L family" 6 3 22 At1g28610 "GDSL-motif lipase, putative similar to lipase [Arabidopsis thaliana] GI:1145627; contains Pfam profile: PF00657 Lipase/Acylhydrolase with GDSL-like motif" 6 3 23 At1g31770 ABC transporter family protein contains Pfam profile: PF00005: ABC transporter 6 3 24 At1g31814 expressed protein 6 3 25 At1g31990 expressed protein 6 4 1 At1g32050 "secretory carrier membrane protein (SCAMP) family protein contains Pfam domain, PF04144: SCAMP family" 6 4 2 At1g32230 "WWE domain-containing protein / ceo protein, putative (CEO) contains Pfam domain, PF02825: WWE domain; identical to cDNA for ceo protein (ceo gene) GI:11044956" 6 4 3 At1g32280 protease inhibitor/seed storage/lipid transfer protein (LTP) family protein contains Pfam protease inhibitor/seed storage/LTP family domain PF00234 6 4 4 At1g32410 vacuolar protein sorting 55 family protein / VPS55 family protein contains Pfam domain PF04133: Vacuolar protein sorting 55 6 4 5 At1g32440 "pyruvate kinase, putative similar to pyruvate kinase isozyme G, chloroplast precursor [Nicotiana tabacum] SWISS-PROT:Q40546" 6 4 6 At1g36000 LOB domain family protein / lateral organ boundaries domain family protein (LBD5) identical to SP|Q9C8V8 Putative LOB domain protein 5 {Arabidopsis thaliana}; similar to lateral organ boundaries (LOB) domain-containing proteins from Arabidopsis thaliana 6 4 7 At1g36095 "hypothetical protein contains Pfam domain, PF04937: Protein of unknown function (DUF 659)" 6 4 8 At1g36550 hypothetical protein weak similarity to gag-pol polyprotein [Zea mays] GI:22296822 6 4 9 At1g36745 hypothetical protein 6 4 10 At1g37080 hypothetical protein contains similarity to hypothetical proteins of [Arabidopsis thaliana] 6 4 11 At1g38065 "expressed protein contains Pfam PF03138: Plant protein family. The function of this family of plant proteins is unknown; previously annotated as 'growth regulator-related protein' based on similarity to axi 1 protein (GB:X80301) (GI:559920) from [Nicotiana tabacum], which, due to scienitific fraud was retracted. Retraction in: Schell J. EMBO J 1999 May 17;18(10):2908. PMID:10400497." 6 4 12 At1g41770 hypothetical protein 6 4 13 At1g41870 hypothetical protein 6 4 14 At1g48230 "phosphate translocator-related low similarity to phosphoenolpyruvate/phosphate translocator precursor [Mesembryanthemum crystallinum] GI:9295275, SP|P52178 Triose phosphate/phosphate translocator, non-green plastid, chloroplast precursor (CTPT) {Brassica oleracea}" 6 4 15 At1g48290 expressed protein ; expression supported by MPSS 6 4 16 At1g48460 expressed protein 6 4 17 At1g48520 "glutamyl-tRNA(Gln) amidotransferase B family protein contains Pfam profiles: PF02934 PET112 family, N terminal region, PF02637 GatB/Yqey domain, PF01162 PET112 family, C terminal region" 6 4 18 At1g48650 "helicase domain-containing protein contains similarity to DEIH-box RNA/DNA helicase [Arabidopsis thaliana] GI:5881579; contains Pfam profiles PF04408: Helicase associated domain (HA2), PF00271: Helicase conserved C-terminal domain, PF00035: Double-stranded RNA binding motif" 6 4 19 At1g48730 expressed protein 6 4 20 At1g48910 flavin-containing monooxygenase family protein / FMO family protein similar to flavin monoxygenase-like protein floozy [Petunia x hybrida] GI:15010541 6 4 21 At1g48970 "eukaryotic translation initiation factor 2B family protein / eIF-2B family protein similar to guanine nucleotide exchange factor, eIF-2B, delta subunit [Mus musculus] GI:529428; contains Pfam profile PF01008: Initiation factor 2 subunit family" 6 4 22 At1g51950 auxin-responsive protein / indoleacetic acid-induced protein 18 (IAA18) identical to SP|O24408|AXII_ARATH Auxin-responsive protein IAA18 (Indoleacetic acid-induced protein 18) {Arabidopsis thaliana} 6 4 23 At1g51990 "O-methyltransferase family 2 protein similar to caffeic acid O-methyltransferase GI:5031492 from [Ocimum basilicum], [SP|Q00763] [Populus tremuloides]" 6 4 24 At1g52155 expressed protein 6 4 25 At1g52230 "photosystem I reaction center subunit VI, chloroplast, putative / PSI-H, putative (PSAH2) identical to SP|Q9SUI6; similar to PSI-H precursor [Nicotiana sylvestris] GI:407355; contains Pfam profile PF03244: Photosystem I reaction centre subunit VI" 6 5 1 At1g52390 hypothetical protein 6 5 2 At1g52420 glycosyl transferase family 1 protein contains Pfam profile: PF00534 Glycosyl transferases group 1 6 5 3 At1g52570 phospholipase D alpha 2 / PLD alpha 2 (PLDALPHA2) (PLD2) / choline phosphatase 2 identical to phospholipase D alpha 2 ( PLD alpha 2) SP:Q9SSQ9 from [Arabidopsis thaliana] 6 5 4 At1g52630 expressed protein contains Pfam PF03138: Plant protein family. The function of this family of plant proteins is unknown; 6 5 5 At1g55310 "SC35-like splicing factor, 33 kD (SCL33) nearly identical to SC35-like splicing factor SCL33, 33 kD [Arabidopsis thaliana] GI:9843659" 6 5 6 At1g55350 "calpain-type cysteine protease family identical to calpain-like protein GI:20268660 from [Arabidopsis thaliana]; contains Pfam profiles: PF00648 Calpain family cysteine protease, PF01067 Calpain large subunit,domain III; identical to cDNA calpain-like protein GI:20268659" 6 5 7 At1g55500 expressed protein contains Pfam profile PF04146: YT521-B-like family 6 5 8 At1g55535 expressed protein 6 5 9 At1g55680 WD-40 repeat family protein contains 2 (1 significant) WD-40 repeats (PF0400); similar to Trp-Asp repeat protein (PIR:T40094) [Schizosaccharomyces] 6 5 10 At1g55730 "cation exchanger, putative (CAX5) similar to low affinity calcium antiporter CAX2 [Arabidopsis thaliana] gi|1488267|gb|AAB05914; similar to H+/Ca2+ exchanger 2 [Ipomoea nil] gi|4512263|dbj|BAA75232; Ca2+:Cation Antiporter (CaCA) Family member PMID:11500563" 6 5 11 At1g55880 "pyridoxal-5'-phosphate-dependent enzyme, beta family protein similar to SP|P50867 Cysteine synthase (EC 4.2.99.8) (O-acetylserine sulfhydrylase) (O-acetylserine (Thiol)-lyase) [Aspergillus nidulans] {Emericella nidulans}; contains Pfam profile PF00291: Pyridoxal-phosphate dependent enzyme" 6 5 12 At1g55930 "CBS domain-containing protein / transporter associated domain-containing protein contains Pfam profiles PF00571: CBS domain, PF03471: Transporter associated domain, PF01595: Domain of unknown function" 6 5 13 At1g60600 UbiA prenyltransferase family protein contains Pfam profile PF01040: UbiA prenyltransferase family 6 5 14 At1g60660 cytochrome b5 domain-containing protein contains InterPro accession IPR001199: Cytochrome b5 6 5 15 At1g60850 "DNA-directed RNA polymerase, putative identical to RNA polymerase subunit [Arabidopsis thaliana] GI:514322; contains Pfam profile PF01000: RNA polymerase Rpb3/RpoA insert domain" 6 5 16 At1g60890 "phosphatidylinositol-4-phosphate 5-kinase family protein similar to phosphatidylinositol-4-phosphate 5-kinase AtPIP5K1 [Arabidopsis thaliana] GI:3702691; contains Pfam profiles PF01504: Phosphatidylinositol-4-phosphate 5-Kinase, PF02493: MORN repeat" 6 5 17 At1g61050 "alpha 1,4-glycosyltransferase family protein / glycosyltransferase sugar-binding DXD motif-containing protein low similarity to alpha-1,4-N-acetylglucosaminyltransferase, Homo sapiens [gi:5726306], Gb3 synthase, Rattus norvegicus [gi:9082162] ; contains Pfam profiles PF04572: Alpha 1,4-glycosyltransferase conserved region, PF04488: Glycosyltransferase sugar-binding region containing DXD motif" 6 5 18 At1g61095 expressed protein 6 5 19 At1g61255 expressed protein 6 5 20 At1g61310 "disease resistance protein (CC-NBS-LRR class), putative domain signature CC-NBS-LRR exists, suggestive of a disease resistance protein." 6 5 21 At1g64065 expressed protein 6 5 22 At1g64110 "AAA-type ATPase family protein contains Pfam domain, PF00004: ATPase, AAA family" 6 5 23 At1g64295 F-box family protein-related contains TIGRFAM TIGR01640 : F-box protein interaction domain 6 5 24 At1g64350 transducin family protein / WD-40 repeat family protein contains 5 WD-40 repeats (PF00400); similar to nuclear pore protein SEH1 (SP:P53011) [Saccharomyces cerevisiae] 6 5 25 At1g64510 ribosomal protein S6 family protein similar to plastid ribosomal protein S6 precursor GB:AAF64311 GI:7582401 from [Spinacia oleracea] 6 6 1 At1g64570 expressed protein 6 6 2 At1g64750 DSS1/SEM1 family protein contains Pfam profile PF05160: DSS1/SEM1 family 6 6 3 At1g64790 translational activator family protein similar to HsGCN1 [Homo sapiens] GI:2282576 6 6 4 At1g67600 "expressed protein contains Pfam domain, PF02681: Uncharacterized BCR, COG1963" 6 6 5 At1g67650 expressed protein 6 6 6 At1g67800 copine-related low similarity to SP|Q99829 Copine I {Homo sapiens} 6 6 7 At1g67840 "ATP-binding region, ATPase-like domain-containing protein contains Pfam profile PF02518: ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain protein; similar to ESTs gb|AI995396.1, dbj|AV557393.1, and dbj|AV557055.1" 6 6 8 At1g67970 "heat shock factor protein, putative (HSF5) / heat shock transcription factor, putative (HSTF5) identical to heat shock transcription factor 5 (HSF5) SP:Q9S7U5 from [Arabidopsis thaliana]; contains Pfam profile: PF00447 HSF-type DNA-binding domain" 6 6 9 At1g68010 glycerate dehydrogenase / NADH-dependent hydroxypyruvate reductase identical to hydroxypyruvate reductase (HPR) GB:D85339 [Arabidopsis thaliana] (Plant Cell Physiol 1997 Apr;38(4):449-55) 6 6 10 At1g68170 nodulin MtN21 family protein similar to MtN21 GI:2598575 (root nodule development) from [Medicago truncatula] 6 6 11 At1g68220 expressed protein 6 6 12 At1g70880 "Bet v I allergen family protein similar to Csf-2 [Cucumis sativus][GI:5762258][J Am Soc Hortic Sci 124, 136-139 (1999)] ; contains Pfam profile PF00407: Pathogenesis-related protein Bet v I family" 6 6 13 At1g70940 "auxin transport protein, putative (PIN3) similar to auxin transport protein [Arabidopsis thaliana] gi|5817301|gb|AAD52695" 6 6 14 At1g71100 ribose 5-phosphate isomerase-related similar to ribose-5-phosphate isomerase GI:18654317 from [Spinacia oleracea] 6 6 15 At1g71160 "beta-ketoacyl-CoA synthase family protein similar to fatty acid elongase 3-ketoacyl-CoA synthase 1 GB:AAC99312, very-long-chain fatty acid condensing enzyme CUT1 [GI:5001734]" 6 6 16 At1g71310 expressed protein 6 6 17 At1g71370 "DEAD/DEAH box helicase, putative similar to ATP-dependent RNA helicase GB:6321111 from (S. cerevisiae)" 6 6 18 At1g71690 expressed protein contains Pfam profile PF04669: Protein of unknown function (DUF579) 6 6 19 At1g71696 "carboxypeptidase D, putative similar to carboxypeptidase D [Anas platyrhynchos] gi|2789654|gb|AAB96915" 6 6 20 At1g74420 "xyloglucan fucosyltransferase, putative (FUT3) identical to SP|Q9CA71 Probable fucosyltransferase 3 (EC 2.4.1.-) (AtFUT3) {Arabidopsis thaliana}; similar to SP|Q9SWH5 Galactoside 2-alpha-L-fucosyltransferase (EC 2.4.1.69) (Xyloglucan alpha-(1,2)-fucosyltransferase) (AtFUT1) {Arabidopsis thaliana}" 6 6 21 At1g74470 "geranylgeranyl reductase identical to geranylgeranyl reductase GB:Y14044 [Arabidopsis thaliana] (involvement: chlorophyll, the tocopherol and the phylloquinone pathways Eur J Biochem 1998 Jan 15;251(1-2):413-7)" 6 6 22 At1g74650 myb family transcription factor (cY13) similar to myb protein cY13 GI:928930 from [Arabidopsis thaliana]; contains Pfam profile: PF00249 myb DNA-binding domain; identical to cDNA cY13 gene GI:928929 6 6 23 At1g74710 isochorismate synthase 1 (ICS1) / isochorismate mutase identical to GI:17223087 and GB:AF078080; contains Pfam profile PF00425: chorismate binding enzyme; contains TIGRfam profile TIGR00543: isochorismate synthases; identical to cDNA isochorismate synthase 1 precursor (ICS1) nuclear gene for plastid product GI:17223086 6 6 24 At1g74890 two-component responsive regulator / response regulator 15 (ARR15) identical to response regulator 15 GI:11870065 from [Arabidopsis thaliana]; contains Pfam profile: PF00072 response regulator receiver domain 6 6 25 At1g74940 senescence-associated protein-related similar to senescence-associated protein SAG102 (GI:22331931) [Arabidopsis thaliana] 6 7 1 At1g75110 expressed protein 6 7 2 At1g75170 SEC14 cytosolic factor family protein / phosphoglyceride transfer family protein similar to polyphosphoinositide binding protein Ssh1p (GI:2739044) {Glycine max}; similar to SEC14 cytosolic factor (Phosphatidylinositol/phosphatidylcholine transfer protein) (PI/PCTP) (SP:P24859) [Kluyveromyces lactis] and to SEC14 cytosolic factor (SP:P53989) [Candida glabrata] 6 7 3 AT5G57480 PC-1 6 7 4 3XSSC PC-1 6 7 5 AT1G29930 PC-1 6 7 6 3XSSC PC-1 6 7 7 AT3G44150 PC-1 6 7 8 3XSSC PC-1 6 7 9 AT4G00810 PC-1 6 7 10 3XSSC PC-1 6 7 11 At1g77885 expressed protein 6 7 12 At1g77940 60S ribosomal protein L30 (RPL30B) similar to ribosomal protein L30 GI:388034 from [Homo sapiens] 6 7 13 At1g78110 expressed protein 6 7 14 At1g78170 expressed protein 6 7 15 At1g78320 "glutathione S-transferase, putative similar to glutathione transferase GI:2853219 from [Carica papaya]" 6 7 16 At1g78390 "9-cis-epoxycarotenoid dioxygenase, putative / neoxanthin cleavage enzyme, putative / carotenoid cleavage dioxygenase, putative similar to 9-cis-epoxycarotenoid dioxygenase [Phaseolus vulgaris][GI:6715257]; similar to neoxanthin cleavage enzyme GI:9857290 from [Vigna unguiculata]" 6 7 17 At1g78570 "NAD-dependent epimerase/dehydratase family protein similar to dTDP-glucose 4,6-dehydratase from Aneurinibacillus thermoaerophilus GI:16357461, RmlB from Leptospira borgpetersenii GI:4234803; contains Pfam profile PF01370 NAD dependent epimerase/dehydratase family" 6 7 18 At1g78620 integral membrane family protein contains Pfam domain PF01940: Integral membrane protein 6 7 19 At2g01180 phosphatidic acid phosphatase family protein / PAP2 family protein similar to phosphatidic acid phosphatase 2a2 [Cavia porcellus] GI:3641336; contains Pfam profile PF01569 PAP2 superfamily 6 7 20 At2g01220 expressed protein 6 7 21 At2g01360 pentatricopeptide (PPR) repeat-containing protein contains Pfam profile PF01535: PPR repeat 6 7 22 At2g01420 "auxin transport protein, putative similar to auxin transport protein PIN7[Arabidopsis thaliana] gi|5817305|gb|AAD52697" 6 7 23 At2g01590 expressed protein 6 7 24 At2g01650 "zinc finger (C2H2 type) family protein contains Pfam domain, PF00096: Zinc finger, C2H2 type" 6 7 25 At2g01790 meprin and TRAF homology domain-containing protein / MATH domain-containing protein similar to ubiquitin-specific protease 12 [Arabidopsis thaliana] GI:11993471; contains Pfam profile PF00917: MATH domain 6 8 1 At2g01860 pentatricopeptide (PPR) repeat-containing protein contains Pfam profile PF01535: PPR repeat 6 8 2 At2g05030 hypothetical protein 6 8 3 At2g05087 hypothetical protein 6 8 4 At2g05320 "beta-1,2-N-acetylglucosaminyltransferase II identical to beta-1,2-N-acetylglucosaminyltransferase II GI:10183645 from [Arabidopsis thaliana]" 6 8 5 At2g05400 meprin and TRAF homology domain-containing protein / MATH domain-containing protein supported by tandem duplication of meprin and TRAF homology (MATH) domain protein (GI:4914358) (TIGR_Ath1:At2g05420) [Arabidopsis thaliana] 6 8 6 At2g05600 hypothetical protein 6 8 7 At2g05647 hypothetical protein similar to transposon-like proteins. 6 8 8 At2g05900 "SET domain-containing protein / YDG/SRA domain-containing protein contains Pfam profiles PF00856: SET domain, PF05033: Pre-SET motif, PF02182: YDG/SRA domain" 6 8 9 At2g05970 F-box family protein contains F-box domain Pfam:PF00646 6 8 10 At2g14080 "disease resistance protein (TIR-NBS-LRR class), putative domain signature TIR-NBS-LRR exists, suggestive of a disease resistance protein." 6 8 11 At2g14120 dynamin-like protein 2b (ADL2b) identical to dynamin like protein 2b (ADL2b) [Arabidopsis thaliana] GI:19032339 6 8 12 At2g14455 hypothetical protein 6 8 13 At2g14540 serpin family protein / serine protease inhibitor family protein similar to phloem serpin-1 [Cucurbita maxima] GI:9937311; contains Pfam profile PF00079: Serpin (serine protease inhibitor) 6 8 14 At2g14730 hypothetical protein 6 8 15 At2g14770 "Ulp1 protease family protein similar to At3g24380, At5g36840, At5g35010, At3g42740, At4g05290, At2g14770, At3g43390, At2g05560, At4g08880, At1g34730, At1g27790, At1g34740, At1g27780, At5g36850, At3g42730, At1g52020, At3g24390, At4g05280, At1g25886, At4g03300; contains Pfam profile PF02902: Ulp1 protease family, C-terminal catalytic domain" 6 8 16 At2g14900 gibberellin-regulated family protein similar to SP|P46690 Gibberellin-regulated protein 4 precursor {Arabidopsis thaliana} GASA4; contains Pfam profile PF02704: Gibberellin regulated protein 6 8 17 At2g15000 expressed protein 6 8 18 At2g18030 peptide methionine sulfoxide reductase family protein similar to SP|P08761 Ecdysone-induced protein 28/29 kDa {Drosophila melanogaster}; contains Pfam profile PF01625: Peptide methionine sulfoxide reductase 6 8 19 At2g18070 hypothetical protein 6 8 20 At2g18230 inorganic pyrophosphatase [soluble] (PPA) / pyrophosphate phospho-hydrolase / PPase nearly identical to SP|P21216 Soluble inorganic pyrophosphatase (EC 3.6.1.1) (Pyrophosphate phospho- hydrolase) (PPase) {Arabidopsis thaliana} 6 8 21 At2g18260 "syntaxin-related protein, putative (SYP112) similar to SP|Q42374 Syntaxin-related protein KNOLLE (Syntaxin 111) (AtSYP111) {Arabidopsis thaliana}" 6 8 22 At2g18440 expressed protein 6 8 23 At2g18470 protein kinase family protein contains Pfam PF00069: Protein kinase domain 6 8 24 At2g18660 expansin family protein (EXPR3) identical to Expansin-related protein 3 precursor (Ath-ExpGamma-1.2) (Swiss-Prot:Q9ZV52) [Arabidopsis thaliana]; contains Prosite PS00092: N-6 Adenine-specific DNA methylases signature; 6 8 25 At2g18720 "eukaryotic translation initiation factor 2 subunit 3, putative / eIF2S3, putative / eIF-2-gamma, putative " 6 9 1 At2g21380 kinesin motor protein-related 6 9 2 At2g21430 "cysteine proteinase A494, putative / thiol protease, putative identical to SP:P43295 Probable cysteine proteinase A494 precursor [Arabidopsis thaliana]; strong similarity to cysteine proteinase RD19A (thiol protease) GI:435618, SP:P43296 from [Arabidopsis thaliana]" 6 9 3 At2g21620 universal stress protein (USP) family protein / responsive to dessication protein (RD2) strong similarity to RD2 protein [Arabidopsis thaliana] GI:15320408; contains Pfam profile PF00582: universal stress protein family; identical to cDNA RD2 GI:15320407 6 9 4 At2g21655 expressed protein contains Pfam PF05617: Arabidopsis thaliana protein of unknown function (DUF784) 6 9 5 At2g21860 violaxanthin de-epoxidase-related contains weak similarity to violaxanthin de-epoxidase precursor gi|1438875|gb|AAC49373 6 9 6 At2g21900 WRKY family transcription factor contains Pfam profile: PF03106 WRKY DNA -binding domain 6 9 7 At2g22070 pentatricopeptide (PPR) repeat-containing protein contains INTERPRO:IPR002885 PPR repeats 6 9 8 At2g22122 expressed protein 6 9 9 At2g25000 WRKY family transcription factor contains Pfam profile: PF03106 WRKY DNA -binding domain 6 9 10 At2g25090 CBL-interacting protein kinase 16 (CIPK16) identical to CBL-interacting protein kinase 16 [Arabidopsis thaliana] gi|14009298|gb|AAK50348 6 9 11 At2g25270 expressed protein 6 9 12 At2g25320 meprin and TRAF homology domain-containing protein / MATH domain-containing protein weak similarity to ubiquitin-specific protease 12 [Arabidopsis thaliana] GI:11993471; contains Pfam profile PF00917: MATH domain 6 9 13 At2g25510 expressed protein 6 9 14 At2g25570 expressed protein 6 9 15 At2g25710 holocarboxylase synthetase 1 (HCS1) identical to holocarboxylase synthetase 1 (hcs1) [Arabidopsis thaliana] GI:19698365 6 9 16 At2g25760 "protein kinase family protein contains protein kinase domain, Pfam:PF00069" 6 9 17 At2g28360 SIT4 phosphatase-associated family protein contains Pfam profile: PF04499 SIT4 phosphatase-associated protein 6 9 18 At2g28420 "lactoylglutathione lyase family protein / glyoxalase I family protein contains glyoxalase family protein domain, Pfam:PF00903" 6 9 19 At2g28580 hypothetical protein contains Pfam profile PF03140: Plant protein of unknown function 6 9 20 At2g28625 expressed protein 6 9 21 At2g28800 chloroplast membrane protein (ALBINO3) Oxa1p homolog {PMID:11148275}; identical to chloroplast membrane protein ALBINO3 [Arabidopsis thaliana] GI:2209332 6 9 22 At2g28850 cytochrome P450 family protein similar to Cytochrome P450 61 (C-22 sterol desaturase) (SP:P54781) {Saccharomyces cerevisiae} 6 9 23 At2g29060 scarecrow transcription factor family protein 6 9 24 At2g29100 "glutamate receptor family protein (GLR2.9) plant glutamate receptor family, PMID:11379626" 6 9 25 At2g31790 UDP-glucoronosyl/UDP-glucosyl transferase family protein contains Pfam profile: PF00201 UDP-glucoronosyl and UDP-glucosyl transferase 6 10 1 At2g31830 endonuclease/exonuclease/phosphatase family protein belongs to Pfam:PF03372: Endonuclease/Exonuclease/phosphatase family; contains 4 WD-40 repeats (PF00400);similar to SP:Q01968 Inositol polyphosphate 5-phosphatase OCRL-1 (EC 3.1.3.-)(Lowe's oculocerebrorenal syndrome protein) (SP:Q01968) [Homo sapiens] 6 10 2 At2g31990 exostosin family protein contains Pfam profile: PF03016 Exostosin family 6 10 3 At2g32040 integral membrane transporter family protein contains 9 transmembrane domains; contains Pfam PF03092: BT1 family; contains TIGRFAMS TIGR00788: folate/biopterin transporter; similar to high affinity folic acid/methotrexate transporter 5 (GI:21898554) [Leishmania tarentolae] 6 10 4 At2g32210 expressed protein 6 10 5 At2g32250 "far-red impaired responsive protein, putative similar to far-red impaired response protein FAR1 [Arabidopsis thaliana] gi|5764395|gb|AAD51282; contains Pfam:PF03101 domain: FAR1 family" 6 10 6 At2g32400 "glutamate receptor family protein (GLR3.7) (GLR5) identical to Glr5 [Arabidopsis thaliana] gi|6644388|gb|AAF21042; plant glutamate receptor family, PMID:11379626" 6 10 7 At2g32460 myb family transcription factor (MYB101) identical to putative transcription factor MYB101 GI:18087348 from [Arabidopsis thaliana] 6 10 8 At2g35035 urease accessory family protein (URED) contains Pfam profile: PF01774 urease accessory protein UreD 6 10 9 At2g35080 expressed protein ; expression supported by MPSS 6 10 10 At2g35240 "plastid developmental protein DAG, putative similar to plastid protein [Arabidopsis thaliana] gi|2246378|emb|CAB06698" 6 10 11 At2g35300 "late embryogenesis abundant group 1 domain-containing protein / LEA group 1 domain-containing protein contains Pfam domain, PF03760: Late embryogenesis abundant (LEA) group 1" 6 10 12 At2g35490 "plastid-lipid associated protein PAP, putative similar to plastid-lipid associated protein PAP3 [Brassica rapa] GI:14248552; contains Pfam profile PF04755: PAP_fibrillin" 6 10 13 At2g35530 bZIP transcription factor family protein contains Pfam domain PF00170: bZIP transcription factor; similar to G-Box binding protein 2 (GI:5381313) [Catharanthus roseus]. 6 10 14 At2g35660 "monooxygenase family protein nearly identical to CTF2A [GI:4164576][Plant Physiol. 119, 364 (1999), PGR99-008]" 6 10 15 At2g35710 glycogenin glucosyltransferase (glycogenin)-related low similarity to glycogenin-2 from Homo sapiens [SP|O15488] 6 10 16 At2g38280 "AMP deaminase, putative / myoadenylate deaminase, putative similar to SP|P15274 AMP deaminase (EC 3.5.4.6) (Myoadenylate deaminase) {Saccharomyces cerevisiae}; contains Pfam profile PF00962: Adenosine/AMP deaminase" 6 10 17 At2g38340 "AP2 domain-containing transcription factor, putative (DRE2B) Similar to DREB2A (GP:3738230) and DREB2B (GP:3738232) [Arabidopsis thaliana]; DRE binding proteins may be involved in dehydration or low temp response" 6 10 18 At2g38500 expressed protein 6 10 19 At2g38570 expressed protein ; expression supported by MPSS 6 10 20 At2g38740 haloacid dehalogenase-like hydrolase family protein similar to SP|P71447 Beta-phosphoglucomutase (EC 5.4.2.6) {Lactococcus lactis}; contains InterPro accession IPR005834: Haloacid dehalogenase-like hydrolase 6 10 21 At2g38800 calmodulin-binding protein-related contains similarity to potato calmodulin-binding protein PCBP GI:17933110 from [Solanum tuberosum] 6 10 22 At2g38890 expressed protein and genefinder 6 10 23 At2g38950 "transcription factor jumonji (jmj) family protein / zinc finger (C5HC2 type) family protein contains Pfam domains, PF02375: jmjN domain, PF02373: jmjC domain and PF02928: C5HC2 zinc finger" 6 10 24 At2g41480 "peroxidase, putative similar to peroxidase [Spinacia oleracea] gi|1781334|emb|CAA71494" 6 10 25 At2g41520 "DNAJ heat shock N-terminal domain-containing protein contains Pfam profiles PF00226: DnaJ domain, PF00515: TPR Domain" 6 11 1 At2g41690 heat shock transcription factor family protein contains Pfam profile: PF00447 HSF-type DNA-binding domain 6 11 2 At2g41720 pentatricopeptide (PPR) repeat-containing protein contains Pfam profile PF01535: PPR repeat 6 11 3 At2g41860 "calcium-dependent protein kinase, putative / CDPK, putative similar to calmodulin-domain protein kinase CDPK isoform 7 [Arabidopsis thaliana] gi|1399277|gb|AAB03247" 6 11 4 At2g41910 "protein kinase family protein contains protein kinase domain, Pfam:PF00069" 6 11 5 At2g42080 DNAJ heat shock N-terminal domain-containing protein low similarity to SP|Q9QYI7 DnaJ homolog subfamily B member 8 (mDJ6) {Mus musculus}; contains Pfam profile PF00226: DnaJ domain 6 11 6 At2g42130 expressed protein contains weak hit to Pfam PF04755: PAP_fibrillin 6 11 7 At2g44735 expressed protein ; expression supported by MPSS 6 11 8 At2g44770 phagocytosis and cell motility protein ELMO1-related contains weak similarity to ELMO1 [Mus musculus] gi|16118551|gb|AAL14464 6 11 9 At2g44930 expressed protein contains Pfam profile PF03140: Plant protein of unknown function 6 11 10 At2g44980 "transcription regulatory protein SNF2, putative similar to SNF2P [Oryza sativa (japonica cultivar-group)] GI:23193483; contains Pfam profiles PF00271: Helicase conserved C-terminal domain, PF00176: SNF2 family N-terminal domain; CG donor site annotated in one isoform based on protein alignments." 6 11 11 At2g45150 phosphatidate cytidylyltransferase family protein contains Pfam profile: PF01148 phosphatidate cytidylyltransferase 6 11 12 At2g45200 Golgi SNARE 12 protein / Golgi SNAP receptor complex member 1 identical to Probable 28 kDa Golgi SNARE protein (Golgi SNAP receptor complex member 1) (SP:O22151) {Arabidopsis thaliana} 6 11 13 At2g45403 hypothetical protein 6 11 14 At2g45460 forkhead-associated domain-containing protein / FHA domain-containing protein 6 11 15 At2g48060 hypothetical protein 6 11 16 At2g48110 expressed protein 6 11 17 At3g01060 expressed protein 6 11 18 At3g01090 "Snf1-related protein kinase (KIN10) (SKIN10) identical to Snf1-related protein kinase, KIN10 SP:Q38997 from [Arabidopsis thaliana]" 6 11 19 At3g01250 expressed protein 6 11 20 At3g01310 "expressed protein similar to unknown protein GB:BAA24863 [Homo sapiens], unknown protein GB:BAA20831 [Homo sapiens], unknown protein GB:AAB42264 [Caenorhabditis elegans]" 6 11 21 At3g01435 Expressed protein 6 11 22 At3g01490 "protein kinase, putative similar to ATMRK1 [Arabidopsis thaliana] gi|2351097|dbj|BAA22079" 6 11 23 At3g04050 "pyruvate kinase, putative similar to pyruvate kinase, cytosolic isozyme [Nicotiana tabacum] SWISS-PROT:Q42954" 6 11 24 At3g04110 "glutamate receptor family protein (GLR1.1) (GLR1) identical to putative glutamate receptor (GLR1) GB:AF079998 [Arabidopsis thaliana]; plant glutamate receptor family, PMID:11379626" 6 11 25 At3g04280 two-component responsive regulator family protein / response regulator family protein contains Pfam profile: PF00072 response regulator receiver domain 6 12 1 At3g04340 "FtsH protease family protein similar to chloroplast FtsH protease [Arabidopsis thaliana] GI:1483215; contains Pfam profiles PF01434: Peptidase family M41, PF00004: ATPase AAA family" 6 12 2 At3g04500 RNA recognition motif (RRM)-containing protein similar to ssRNA-binding protein [Dictyostelium discoideum] GI:1546894; contains InterPro entry IPR000504: RNA-binding region RNP-1 (RNA recognition motif) (RRM) 6 12 3 At3g04560 expressed protein 6 12 4 At3g04690 "protein kinase family protein contains protein kinase domain, Pfam:PF00069" 6 12 5 At3g04750 pentatricopeptide (PPR) repeat-containing protein contains Pfam profile PF01535: PPR repeat 6 12 6 At3g07220 "transcriptional activator, putative similar to transcriptional activator FHA1 [Nicotiana tabacum] gi|15705932|gb|AAL05884" 6 12 7 At3g07290 pentatricopeptide (PPR) repeat-containing protein contains Pfam profile: PF01535: PPR repeat 6 12 8 At3g07450 "protease inhibitor/seed storage/lipid transfer protein (LTP) family protein similar to cysteine-rich 5B protein - Lycopersicon esculentum, PIR2:S39552 [GI:415833]; contains Pfam protease inhibitor/seed storage/LTP family domain PF00234" 6 12 9 At3g07490 "calcium-binding protein, putative similar to calcium-binding protein GI:6580549 from [Lotus japonicus]" 6 12 10 At3g07620 exostosin family protein contains Pfam profile: PF03016 Exostosin family 6 12 11 At3g07680 emp24/gp25L/p24 family protein similar to SP|Q15363 Cop-coated vesicle membrane protein p24 precursor (p24A) {Homo sapiens}; contains Pfam profile PF01105: emp24/gp25L/p24 family 6 12 12 At3g07810 "heterogeneous nuclear ribonucleoprotein, putative / hnRNP, putative contains Pfam profile: PF00076 RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)" 6 12 13 At3g07870 F-box family protein contains F-box domain Pfam:PF00646 6 12 14 At3g10840 "hydrolase, alpha/beta fold family protein low similarity to hydrolase [Terrabacter sp. DBF63] GI:14196240; contains Pfam profile: PF00561 alpha/beta hydrolase fold" 6 12 15 At3g10890 "(1-4)-beta-mannan endohydrolase, putative similar to (1-4)-beta-mannan endohydrolase [Coffea arabica] GI:10178872, (1-4)-beta-mannan endohydrolase GB:AAB87859 [Lycopersicon esculentum]; contains Pfam profile PF00150: Cellulase (glycosyl hydrolase family 5)" 6 12 16 At3g10990 F-box family protein contains TIGRfam:TIGR01640 F-box protein interaction domain 6 12 17 At3g11050 "ferritin, putative similar to ferritin subunit cowpea2 precursor GI:2970654 (Vigna unguiculata); contains Pfam profile PF00210: Ferritin-like domain" 6 12 18 At3g11230 "yippee family protein similar to qdgl-1 [Coturnix coturnix] GI:10441650, Yippee protein [Homo sapiens] GI:5713281; contains Pfam profile PF03226: Yippee putative zinc-binding protein" 6 12 19 At3g11280 myb family transcription factor contains Pfam profile: PF00249 Myb-like DNA-binding domain 6 12 20 At3g11420 fringe-related protein similar to hypothetical protein GB:AAC23643 [Arabidopsis thaliana] + weak similarity to Fringe [Schistocerca gregaria](GI:6573138);Fringe encodes an extracellular protein that regulates Notch signalling. 6 12 21 At3g11470 4'-phosphopantetheinyl transferase family protein contains Pfam profile PF01648: 4'-phosphopantetheinyl transferase superfamily 6 12 22 At3g13845 expressed protein 6 12 23 At3g13890 myb family transcription factor (MYB26) similar to myb-related transcription factor GI:1167486 from [Lycopersicon esculentum]; contains myb DNA binding domain: PF0049 6 12 24 At3g14060 expressed protein 6 12 25 At3g14090 exocyst subunit EXO70 family protein contains Pfam domain PF03081: Exo70 exocyst complex subunit; 6 13 1 At3g14220 "GDSL-motif lipase/hydrolase family protein similar to myrosinase-associated proteins GI:1769968, GI:1769970 from [Brassica napus]; contains InterPro Entry IPR001087 Lipolytic enzyme, G-D-S-L family; contains 1 predicted transmembrane domain;" 6 13 2 At3g14240 subtilase family protein contains similarity to SBT1 GI:1771160 from [Lycopersicon esculentum] 6 13 3 At3g14400 ubiquitin-specific protease 25 (UBP25) similar to GI:11993490 6 13 4 At3g14450 "RNA-binding protein, putative contains Pfam profile: PF00076 RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) (2 copies)" 6 13 5 At3g17030 expressed protein 6 13 6 At3g17100 expressed protein 6 13 7 At3g17225 invertase/pectin methylesterase inhibitor family protein similar to SP|P83326 Pectinesterase inhibitor (Pectin methylesterase inhibitor) (PMEI) {Actinidia chinensis}; contains Pfam profile PF04043: Plant invertase/pectin methylesterase inhibitor 6 13 8 At3g17250 protein phosphatase 2C-related / PP2C-related similar to protein phosphatase-2C GB:AAC36698 from [Mesembryanthemum crystallinum] 6 13 9 At3g17430 "phosphate translocator-related low similarity to phosphoenolpyruvate/phosphate translocator precursor [Mesembryanthemum crystallinum] GI:9295275, SP|P52178 Triose phosphate/phosphate translocator, non-green plastid, chloroplast precursor (CTPT) {Brassica oleracea}" 6 13 10 At3g17480 F-box family protein contains F-box domain Pfam:PF00646 6 13 11 At3g17611 "rhomboid family protein / zinc finger protein-related contains Pfam profiles PF01694: Rhomboid family, PF00641: Zn-finger in Ran binding protein and others" 6 13 12 At3g17660 human Rev interacting-like family protein / hRIP family protein similar to ARF GAP-like zinc finger-containing protein ZIGA3 GI:10441352 from [Arabidopsis thaliana]; contains InterPro accession IPR001164: Human Rev interacting-like protein (hRIP) 6 13 13 At3g20320 mce-related family protein contains Pfam PF02470: mce related protein 6 13 14 At3g20362 hypothetical protein loosely supported by Brassica genome sequence alignments. 6 13 15 At3g20540 "DNA-directed DNA polymerase family protein similar to PolI-like DNA polymerase [Oryza sativa] GI:19912795; contains Pfam profiles PF01612: 3'-5' exonuclease, PF00476: DNA polymerase I family A" 6 13 16 At3g20590 "non-race specific disease resistance protein, putative similar to non-race specific disease resistance protein [Arabidopsis thaliana] NDR1 gi|2754816|gb|AAB95208" 6 13 17 At3g20770 ethylene-insensitive 3 (EIN3) identical to ethylene-insensitive3 GI:2224933 from [Arabidopsis thaliana] 6 13 18 At3g20810 transcription factor jumonji (jmjC) domain-containing protein contains Pfam domain PF02373: jmjC domain 6 13 19 At3g20980 hypothetical protein 6 13 20 At3g21090 "ABC transporter family protein similar to ATP-binding cassette, sub-family G (WHITE), member 2 GB:NP_036050 from [Mus musculus]" 6 13 21 At3g23780 "DNA-directed RNA polymerase family protein similar to SP|P38420 DNA-directed RNA polymerase II 135 kDa polypeptide (EC 2.7.7.6) (RNA polymerase II subunit 2) {Arabidopsis thaliana}; contains Pfam profiles PF04560: RNA polymerase Rpb2 domain 7, PF04561: RNA polymerase Rpb2 domain 2, PF04565: RNA polymerase Rpb2 domain 3, PF04566: RNA polymerase Rpb2 domain 4, PF04567: RNA polymerase Rpb2 domain 5" 6 13 22 At3g23830 "glycine-rich RNA-binding protein, putative similar to Glycine-rich RNA-binding protein 2, mitochondrial precursor (AtGRP2) (Swiss-Prot:Q9SVM8) [Arabidopsis thaliana]; contains Pfam profile: PF00076 RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)" 6 13 23 At3g24000 pentatricopeptide (PPR) repeat-containing protein contains Pfam profile PF01535: PPR repeat 6 13 24 At3g24060 self-incompatibility protein-related low similarity to S3 self-incompatibility protein [Papaver rhoeas] GI:1107841 6 13 25 At3g24210 "ankyrin repeat family protein contains ankyrin repeats, Pfam domain PF00023" 6 14 1 At3g24255 expressed protein 6 14 2 At3g24440 fibronectin type III domain-containing protein contains Pfam profile PF00041: Fibronectin type III domain 6 14 3 At3g24500 "ethylene-responsive transcriptional coactivator, putative similar to ethylene-responsive transcriptional coactivator [Lycopersicon esculentum] gi|5669634|gb|AAD46402" 6 14 4 At3g27230 expressed protein 6 14 5 At3g27280 "prohibitin, putative strong similarity to prohibitin [Arabidopsis thaliana] GI:1946331; contains Pfam profile PF01145: SPFH domain / Band 7 family" 6 14 6 At3g27430 "20S proteasome beta subunit B (PBB1) identical to 20S proteasome beta subunit PBB1 (PBB1) GB:AAC32066 [Arabidopsis thaliana] (Genetics 149 (2), 677-692 (1998)); contains Pfam profile: PF00227 proteasome A-type and B-type;" 6 14 7 At3g27480 DC1 domain-containing protein contains Pfam profile PF03107: DC1 domain 6 14 8 At3g27660 glycine-rich protein / oleosin identical to oleosin isoform GB:S71286 from [Arabidopsis thaliana]; identical to cDNA oleosin (isoform Atol2) GI:987013 6 14 9 At3g27720 zinc finger protein-related contains Pfam:PF01485 IBR domain 6 14 10 At3g27920 trichome differentiation protein / GLABROUS1 protein (GL1) identical to trichome differentiation protein GL1 SP:P27900 from [Arabidopsis thaliana]; contains Pfam profile: PF00249 Myb-like DNA-binding domain 6 14 11 At3g27970 "exonuclease family protein contains exonuclease domain, Pfam:PF00929" 6 14 12 At3g32100 hypothetical protein 6 14 13 At3g32180 hypothetical protein 6 14 14 At3g32940 expressed protein 6 14 15 At3g33131 hypothetical protein 6 14 16 At3g42140 hypothetical protein 6 14 17 At3g42180 exostosin family protein contains Pfam profile: PF03016 Exostosin family 6 14 18 At3g42440 hypothetical protein several hypothetical proteins - Arabidopsis thaliana 6 14 19 At3g42510 hypothetical protein 6 14 20 At3g45610 Dof-type zinc finger domain-containing protein identical to dof6 zinc finger protein GI:5689615 from [Arabidopsis thaliana] 6 14 21 At3g45670 "protein kinase-related contains eukaryotic protein kinase domain, INTERPRO:IPR000719" 6 14 22 At3g45830 expressed protein 6 14 23 At3g45890 "expressed protein contains Pfam domain, PF04884: Protein of unknown function, DUF647" 6 14 24 At3g46070 "zinc finger (C2H2 type) family protein contains zinc finger, C2H2 type, domain, PROSITE:PS00028" 6 14 25 At3g46130 myb family transcription factor (MYB48) contains Pfam profile: PF00249 myb-like DNA-binding domain 6 15 1 At3g46320 histone H4 nearly identical to histone H4 [Arabidopsis thaliana] GI:166740 6 15 2 At3g46380 hypothetical protein 6 15 3 At3g49170 pentatricopeptide (PPR) repeat-containing protein contains INTERPRO:IPR002885 PPR repeats 6 15 4 At3g49230 hypothetical protein 6 15 5 At3g49390 "RNA-binding protein, putative RNA-binding protein RBP37, Arabidopsis thaliana, PIR:T04196" 6 15 6 At3g49450 F-box family protein contains F-box domain Pfam:PF00646 6 15 7 At3g49630 "2-oxoacid-dependent oxidase, putative strong similarity to partial cds of 2-oxoacid-dependent oxidase (din11) from GI:10834554 [Arabidopsis thaliana]" 6 15 8 At3g49690 myb family transcription factor contains PFAM profile: myb DNA binding domain PF00249 6 15 9 At3g49870 "ADP-ribosylation factor, putative similar to ADP-ribosylation factor-like protein 1 (SP:P40616) [Homo sapiens]; ARF3 ADP-RIBOSYLATION FACTOR,GP:453191 Arabidopsis thaliana; contains domain PF00025: ADP-ribosylation factor family" 6 15 10 At3g49930 "zinc finger (C2H2 type) family protein contains Pfam profile: PF00096 zinc finger, C2H2 type" 6 15 11 At3g52640 nicastrin-related contains weak similarity to Nicastrin precursor (Swiss-Prot:Q92542) [Homo sapiens] 6 15 12 At3g52690 "hypothetical protein predicted proteins, Arabidopsis thaliana" 6 15 13 At3g52830 "hypothetical protein MobA, Pseudomonas alcaligenes, EMBL:PAU88088" 6 15 14 At3g52890 protein kinase (KIPK) identical to protein kinase KIPK (KCBP-interacting protein kinase) [Arabidopsis thaliana] gi|7716430|gb|AAF68383 6 15 15 At3g53030 "protein kinase family protein contains eukaryotic protein kinase domain, INTERPRO:IPR000719" 6 15 16 At3g53090 "HECT-domain-containing protein / ubiquitin-transferase family protein / IQ calmodulin-binding motif-containing protein contains Pfam profiles PF00632: HECT-domain (ubiquitin-transferase), PF00612: IQ calmodulin-binding motif" 6 15 17 At3g53250 auxin-responsive family protein similar to auxin-induced protein TGSAUR22 (GI:10185820) [Tulipa gesneriana and auxin-induced protein 6B (SP:P33083) (PIR:T10942) [Glycine max] 6 15 18 At3g53300 "cytochrome P450 family protein CYTOCHROME P450 71B5, Arabidopsis thaliana, SWISSPROT:C7B5_ARATH" 6 15 19 At3g55880 expressed protein 6 15 20 At3g55940 "phosphoinositide-specific phospholipase C, putative similar to phosphoinositide specific phospholipase C GI:857374 from [Arabidopsis thaliana]" 6 15 21 At3g56120 Met-10+ like family protein non-consensus TT donor splice site at exon 4 ; contains Pfam profile PF02475: Met-10+ like-protein 6 15 22 At3g56160 expressed protein 6 15 23 At3g56340 40S ribosomal protein S26 (RPS26C) several 40S ribosomal protein S26 6 15 24 At3g56400 "WRKY family transcription factor DNA-binding protein 4 WRKY4 - Nicotiana tabacum, EMBL:AF193771" 6 15 25 At3g56580 "zinc finger (C3HC4-type RING finger) family protein contains INTERPRO domain, IPR001841, RING finger" 6 16 1 At3g56640 exocyst complex subunit Sec15-like family protein contains Pfam profile PF04091: Exocyst complex subunit Sec15-like 6 16 2 At3g59450 calcium-binding EF hand family protein contains INTERPRO:IPR002048 calcium-binding EF-hand domain 6 16 3 At3g59510 "leucine-rich repeat family protein contains leucine rich-repeat domains Pfam:PF00560, INTERPRO:IPR001611; contains some similarity to Hcr2-5D [Lycopersicon esculentum] gi|3894393|gb|AAC78596" 6 16 4 At3g59680 expressed protein 6 16 5 At3g59750 "receptor lectin kinase, putative similar to receptor lectin kinase 3 [Arabidopsis thaliana] gi|4100060|gb|AAD00733" 6 16 6 At3g59890 "dihydrodipicolinate reductase family protein weak similarity to SP|Q52419 Dihydrodipicolinate reductase (EC 1.3.1.26) (DHPR) {Pseudomonas syringae}; contains Pfam profiles PF01113: Dihydrodipicolinate reductase N-terminus, PF05173: Dihydrodipicolinate reductase C-terminus" 6 16 7 At3g59950 autophagy 4b (APG4b) identical to autophagy 4b [Arabidopsis thaliana] gi|19912145|dbj|BAB88384 6 16 8 At3g60110 "DNA-binding bromodomain-containing protein contains bromodomain, INTERPRO:IPR001487" 6 16 9 At3g60180 "uridylate kinase, putative / uridine monophosphate kinase, putative / UMP kinase, putative similar to uridylate kinase (EC 2.7.4.-) (UK) (Uridine monophosphate kinase) (UMP kinase) (UMP/CMP kinase) (Swiss-Prot:O04905) [Arabidopsis thaliana]" 6 16 10 At3g62880 mitochondrial import inner membrane translocase subunit Tim17/Tim22/Tim23 family protein contains PFam PF02466: Mitochondrial import inner membrane translocase subunit Tim17 6 16 11 At3g62940 OTU-like cysteine protease family protein contains Pfam profile PF02338: OTU-like cysteine protease 6 16 12 At3g63120 "cyclin family protein similar to cyclin 2 [Trypanosoma brucei] GI:7339572, cyclin 6 [Trypanosoma cruzi] GI:12005317; contains Pfam profile PF00134: Cyclin, N-terminal domain" 6 16 13 At3g63180 expressed protein 6 16 14 At3g63290 expressed protein 6 16 15 At3g63350 heat shock transcription factor family protein contains Pfam profile: PF00447 HSF-type DNA-binding domain 6 16 16 At3g63490 "ribosomal protein L1 family protein ribosomal protein L1, S.oleracea, EMBL:SORPL1" 6 16 17 At3g63530 "zinc finger (C3HC4-type RING finger) family protein contains Pfam profile: PF00097 zinc finger, C3HC4 type (RING finger)" 6 16 18 At4g02380 "late embryogenesis abundant 3 family protein / LEA3 family protein similar to several small proteins (~100 aa) that are induced by heat, auxin, ethylene and wounding such as Phaseolus aureus indole-3-acetic acid induced protein ARG (SW:32292); contains Pfam profile PF03242: Late embryogenesis abundant protein" 6 16 19 At4g02425 expressed protein 6 16 20 At4g02570 cullin family protein similar to cullin 3 [Homo sapiens] GI:3639052; contains Pfam profile PF00888: Cullin family 6 16 21 At4g02630 "protein kinase family protein contains protein kinase domain, Pfam:PF00069; contains serine/threonine protein kinase domain, INTERPRO:IPR002290" 6 16 22 At4g02780 copalyl diphosphate synthase / CPS / ent-kaurene synthetase A (GA1) identical to GI:571330 [PMID: 7994182]; formerly called ent-kaurene synthetase A 6 16 23 At4g02840 "small nuclear ribonucleoprotein D1, putative / snRNP core protein D1, putative / Sm protein D1, putative similar to small nuclear ribonucleoprotein Sm D1 (snRNP core protein D1, Sm-D1, Sm-D autoantigen) [Mouse] SWISS-PROT:P13641" 6 16 24 At4g03010 "leucine-rich repeat family protein contains leucine rich-repeat domains Pfam:PF00560, INTERPRO:IPR001611; contains similarity to Hcr2-0A [Lycopersicon esculentum] gi|3894385|gb|AAC78592" 6 16 25 At4g03070 2-oxoglutarate-dependent dioxygenase (AOP1.2) identical to GI:16118887; contains PF03171: 2OG-Fe(II) oxygenase superfamily domain 6 17 1 At4g07526 hypothetical protein 6 17 2 At4g07740 hypothetical protein 6 17 3 At4g08098 hypothetical protein 6 17 4 At4g08160 "glycosyl hydrolase family 10 protein / carbohydrate-binding domain-containing protein ; contains Pfam profiles PF00331: Glycosyl hydrolase family 10, PF02018: Carbohydrate binding domain" 6 17 5 At4g08290 nodulin MtN21 family protein similar to MtN21 GI:2598575 (root nodule development) from [Medicago truncatula] 6 17 6 At4g08340 "Ulp1 protease family protein contains Pfam profile PF02902: Ulp1 protease family, C-terminal catalytic domain" 6 17 7 At4g08530 protease inhibitor/seed storage/lipid transfer protein (LTP) family protein contains Pfam protease inhibitor/seed storage/LTP family domain PF00234 6 17 8 At4g08580 microfibrillar-associated protein-related similar to Microfibrillar-associated protein 1 (Associated microfibril protein) (AMF) (Swiss-Prot:P55080) [Gallus gallus] 6 17 9 At4g11400 "ARID/BRIGHT DNA-binding domain-containing protein / ELM2 domain-containing protein / Myb-like DNA-binding domain-containing protein similar to BRG1-binding protein ELD/OSA1 [Homo sapiens] GI:18568414; contains Pfam profiles PF01388: ARID/BRIGHT DNA binding domain, PF01448: ELM2 domain, PF00249: Myb-like DNA-binding domain" 6 17 10 At4g11460 protein kinase family protein contains Pfam PF00069: Protein kinase domain 6 17 11 At4g11660 heat shock factor protein 7 (HSF7) / heat shock transcription factor 7 (HSTF7) identical to heat shock factor protein 7 (HSF7) SP:Q9T0D3 from [Arabidopsis thaliana] 6 17 12 At4g11720 hypothetical protein 6 17 13 At4g11880 MADS-box protein (AGL14) nearly identical to MADS-box protein AGL14 GI:862644 6 17 14 At4g11940 hypothetical protein predicted proteins Arabidopsis thaliana 6 17 15 At4g12080 "DNA-binding family protein contains a AT hook motif (DNA binding motifs with a preference for A/T rich regions), Pfam:PF02178" 6 17 16 At4g12140 "zinc finger (C3HC4-type RING finger) family protein low similarity to RING-H2 finger proteins RHG1a [Arabidopsis thaliana] GI:3822225, RHY1a [Arabidopsis thaliana] GI:3790593; contains Pfam profile PF00097: Zinc finger, C3HC4 type (RING finger)" 6 17 17 At4g14700 "replication control protein, putative similar to origin recognition complex subunit 1 (Replication control protein 1) [Homo sapiens] SWISS-PROT:Q13415" 6 17 18 At4g14730 transmembrane protein-related low similarity to transmembrane protein OTMP [Ovis aries] GI:9965379 6 17 19 At4g14880 cysteine synthase / O-acetylserine (thiol)-lyase / O-acetylserine sulfhydrylase (OAS1) nearly identical to SP|P47998 Cysteine synthase (EC 4.2.99.8) (O-acetylserine sulfhydrylase) (O-acetylserine (Thiol)-lyase) {Arabidopsis thaliana}; identical to cDNA O-acetylserine lyase (At.OAS.5-8) GI:6983573 6 17 20 At4g14920 "PHD finger transcription factor, putative " 6 17 21 At4g15056 hypothetical protein 6 17 22 At4g15093 catalytic LigB subunit of aromatic ring-opening dioxygenase family contains Pfam PF02900: Catalytic LigB subunit of aromatic ring-opening dioxygenase 6 17 23 At4g15240 fringe-related protein + weak similarity to Fringe [Schistocerca gregaria](GI:6573138);Fringe encodes an extracellular protein that regulates Notch signalling. 6 17 24 At4g15300 cytochrome P450 family protein similar to Cytochrome P450 90C1 (ROTUNDIFOLIA3) (SP:Q9M066) [Arabidopsis thaliana]; contains Pfam profile: PF00067: Cytochrome P450 6 17 25 At4g17760 expressed protein 6 18 1 At4g17810 "zinc finger (C2H2 type) family protein contains Pfam domain, PF00096: Zinc finger, C2H2 type" 6 18 2 At4g17990 hypothetical protein contains Pfam profile PF04776: Protein of unknown function (DUF626) 6 18 3 At4g18020 pseudo-response regulator 2 (APRR2) (TOC2) identical to pseudo-response regulator 2 GI:7576356 from [Arabidopsis thaliana] 6 18 4 At4g18190 "purine permease family protein similar to purine permease [Arabidopsis thaliana] GI:7620007; contains Pfam profile PF03151: Domain of unknown function, DUF250" 6 18 5 At4g18250 "receptor serine/threonine kinase, putative similar to to receptor serine/threonine kinase PR5K gi|1235680|gb|AAC49208" 6 18 6 At4g18375 KH domain-containing protein contains similarity to RNA-binding KH-domains PF:00013 6 18 7 At4g18420 hypothetical protein 6 18 8 At4g21210 expressed protein contains Pfam domain PF03618: Domain of unknown function (DUF299) 6 18 9 At4g21240 F-box family protein contains F-box domain Pfam:PF00646 6 18 10 At4g21410 protein kinase family protein contains Pfam PF00069: Protein kinase domain 6 18 11 At4g21450 vesicle-associated membrane family protein / VAMP family protein similar to VAP27 GI:6688926 [Nicotiana plumbaginifolia] 6 18 12 At4g21600 "bifunctional nuclease, putative similar to bifunctional nuclease [Zinnia elegans] gi|4099833|gb|AAD00694" 6 18 13 At4g21660 "proline-rich spliceosome-associated (PSP) family protein similar to SP|Q13435 Splicing factor 3B subunit 2 (Spliceosome associated protein 145) (SAP 145) (SF3b150) (Pre-mRNA splicing factor SF3b 145 kDa subunit) {Homo sapiens}; contains Pfam profiles PF04046: PSP, PF04037: Domain of unknown function (DUF382)" 6 18 14 At4g21840 "methionine sulfoxide reductase domain-containing protein / SelR domain-containing protein weak similarity to pilin-like transcription factor [Homo sapiens] GI:5059062, SP|P14930 Peptide methionine sulfoxide reductase msrA/msrB (EC 1.8.4.6) {Neisseria gonorrhoeae}; contains Pfam profile PF01641: SelR domain" 6 18 15 At4g21870 "26.5 kDa class P-related heat shock protein (HSP26.5-P) contains Pfam profile: PF00011 Hsp20/alpha crystallin family: identified in Scharf, K-D., et al,Cell Stress & Chaperones (2001) 6: 225-237." 6 18 16 At4g24440 transcription initiation factor IIA gamma chain / TFIIA-gamma (TFIIA-S) identical to transcription initiation factor IIA gamma chain SP:Q39236 from [Arabidopsis thaliana]; 6 18 17 At4g24470 "zinc finger (GATA type) protein ZIM (ZIM) identical to zinc-finger protein expressed in Inflorescence Meristem, ZIM gi:8918533 from [Arabidopsis thaliana]" 6 18 18 At4g24620 "glucose-6-phosphate isomerase, putative similar to glucose-6-phosphate isomerase [Spinacia oleracea] GI:3413511; contains Pfam profile PF00342: glucose-6-phosphate isomerase" 6 18 19 At4g24670 "alliinase family protein contains Pfam profiles: PF04864 allinase C-terminal domain, PF04863 alliinase EGF-like domain" 6 18 20 At4g24810 "ABC1 family protein contains Pfam domain, PF03109: ABC1 family" 6 18 21 At4g24890 calcineurin-like phosphoesterase family protein contains Pfam profile: PF00149 calcineurin-like phosphoesterase 6 18 22 At4g25040 integral membrane family protein contains TIGRFAM TIGR01569 : plant integral membrane protein TIGR01569; contains Pfam PF04535 : Domain of unknown function (DUF588) 6 18 23 At4g25100 "superoxide dismutase [Fe], chloroplast (SODB) / iron superoxide dismutase (FSD1) identical to Fe-superoxide dismutase [Arabidopsis thaliana] gi|166700|gb|AAA32791; supported by cDNA, Ceres:32935" 6 18 24 At4g27657 expressed protein 6 18 25 At4g27710 cytochrome P450 family protein contains Pfam profile: PF00067 cytochrome P450 6 19 1 At4g27870 integral membrane family protein contains Pfam PF01988: Integral membrane protein 6 19 2 At4g27920 expressed protein various predicted proteins 6 19 3 At4g28070 AFG1-like ATPase family protein contains Pfam profile: PF03969 AFG1-like ATPase 6 19 4 At4g28110 myb family transcription factor (MYB41) contains PFAM profile: myb DNA binding protein PF00249 6 19 5 At4g28280 expressed protein 6 19 6 At4g28320 "glycosyl hydrolase family 5 protein / cellulase family protein mannan endo-1,4-beta-mannosidase (EC 3.2.1.78) - tomato, PIR2:T04323" 6 19 7 At4g30940 potassium channel tetramerisation domain-containing protein contains Pfam profile PF02214: K+ channel tetramerisation domain 6 19 8 At4g30993 expressed protein 6 19 9 At4g31115 expressed protein supported by full length cDNA gi:21436034 from [Arabidopsis thaliana] 6 19 10 At4g31150 endonuclease V family protein contains Pfam PF04493: Endonuclease V 6 19 11 At4g31330 "expressed protein contains Pfam profile PF04654: Protein of unknown function, DUF599" 6 19 12 At4g31390 "ABC1 family protein contains Pfam domain, PF03109: ABC1 family" 6 19 13 At4g31550 WRKY family transcription factor contains Pfam profile: PF03106 WRKY DNA -binding domain 6 19 14 At4g31580 "splicing factor RSZp22 (RSZP22) / 9G8-like SR protein (SRZ22) identical to RSZp22 protein [Arabidopsis thaliana] gi|2582645|emb|CAA05352, 9G8-like SR protein [Arabidopsis thaliana] GI:3435094; contains Pfam profiles PF00076: RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) and PF00098: Zinc knuckle; identical to cDNA 9G8-like SR protein (SRZ22) GI:3435093" 6 19 15 At4g34100 "zinc finger (C3HC4-type RING finger) family protein contains Pfam profile: PF00097 zinc finger, C3HC4 type (RING finger)" 6 19 16 At4g34138 UDP-glucoronosyl/UDP-glucosyl transferase family protein contains Pfam profile: PF00201 UDP-glucoronosyl and UDP-glucosyl transferase 6 19 17 At4g34265 expressed protein 6 19 18 At4g34310 expressed protein 6 19 19 At4g34460 "guanine nucleotide-binding protein beta subunit (GB1) / GTP-binding protein beta subunit (AGB1) / transducin contains 7 WD-40 repeats (PF00400); identical to Guanine nucleotide-binding protein beta subunit.SP:P49177 [Arabidopsis thaliana]; Weiss, CA et al, PNAS 91:9954 (1994)" 6 19 20 At4g34520 fatty acid elongase 1 (FAE1) identical to fatty acid elongase 1 [GI:881615] 6 19 21 At4g34690 hypothetical protein 6 19 22 At4g34750 "auxin-responsive protein, putative / small auxin up RNA (SAUR_E) contains similarity to indole-3-acetic acid induced protein ARG7 SP:P32295 from [Phaseolus aureus]" 6 19 23 AT5G57480 PC-1 6 19 24 3XSSC PC-1 6 19 25 AT1G29930 PC-1 6 20 1 3XSSC PC-1 6 20 2 AT3G44150 PC-1 6 20 3 3XSSC PC-1 6 20 4 AT4G00810 PC-1 6 20 5 3XSSC PC-1 6 20 6 At4g37380 pentatricopeptide (PPR) repeat-containing protein contains Pfam profile PF01535: PPR repeat 6 20 7 At4g37440 expressed protein 6 20 8 At4g37620 hypothetical protein 6 20 9 At4g37670 GCN5-related N-acetyltransferase (GNAT) family protein / amino acid kinase family protein similar to SP|P08205 from Escherichia coli ; contains Pfam profile PF00696: Amino acid kinase family 6 20 10 At4g37830 "cytochrome c oxidase-related contains weak similarity to cytochrome c oxidase polypeptide VIa-liver, mitochondrial precursor (EC 1.9.3.1) (Swiss-Prot:P10818) [Rattus norvegicus]" 6 20 11 At4g37890 "zinc finger (C3HC4-type RING finger) family protein contains Pfam profiles PF00097: Zinc finger, C3HC4 type (RING finger), PF00092: von Willebrand factor type A domain" 6 20 12 At4g38060 expressed protein 6 20 13 At4g38100 expressed protein 6 20 14 At5g01520 "zinc finger (C3HC4-type RING finger) family protein similar to MTD2 [Medicago truncatula] GI:9294812; contains Pfam profile PF00097: Zinc finger, C3HC4 type (RING finger)" 6 20 15 At5g01560 "lectin protein kinase, putative similar to receptor lectin kinase 3 [Arabidopsis thaliana] gi|4100060|gb|AAD00733; contains protein kinase domain, Pfam:PF00069; contains legume lectins alpha and beta domains, Pfam:PF00138 and Pfam:PF00139" 6 20 16 At5g01710 expressed protein 6 20 17 At5g01750 expressed protein contains Pfam profile PF04525: Protein of unknown function (DUF567) 6 20 18 At5g01930 "(1-4)-beta-mannan endohydrolase, putative similar to (1-4)-beta-mannan endohydrolase [Coffea arabica] GI:10178872; contains Pfam profile PF00150: Cellulase (glycosyl hydrolase family 5)" 6 20 19 At5g01990 "auxin efflux carrier family protein contains auxin efflux carrier domain, Pfam:PF03547" 6 20 20 At5g02130 "expressed protein kinesin light chain - Plectonema boryanum, EMBL:U78597" 6 20 21 At5g02190 aspartyl protease family protein contains Pfam profile PF00026: Eukaryotic aspartyl protease 6 20 22 At5g04940 "SET domain-containing protein (SUVH1) contains Pfam profiles PF00856: SET domain, PF05033: Pre-SET motif, PF02182: YDG/SRA domain; identical to cDNA SUVH1 (SUVH1) GI:13517742" 6 20 23 At5g04990 sad1/unc-84 protein-related contains weak similarity to Sad1/unc-84 protein-like 1 (Swiss-Prot:O94901) [Homo sapiens] 6 20 24 At5g05140 "transcription elongation factor-related low similarity to transcription elongation factor TFIIS.h [Mus musculus] GI:3288547, elongin A [Mus musculus] GI:6009624" 6 20 25 At5g05200 "ABC1 family protein contains Pfam domain, PF03109: ABC1 family" 6 21 1 At5g05350 "expressed protein contains Pfam profile PF04749: Protein of unknown function, DUF614; expression supported by MPSS" 6 21 2 At5g05390 "laccase, putative / diphenol oxidase, putative similar to laccase [Populus balsamifera subsp. trichocarpa][GI:3805960]" 6 21 3 At5g05550 expressed protein similar to 6b-interacting protein 1 (NtSIP1) [Nicotiana tabacum] GI:18149189 6 21 4 At5g05590 phosphoribosylanthranilate isomerase 2 (PAI2) identical to gi:619747 6 21 5 At5g08240 expressed protein 6 21 6 At5g08300 "succinyl-CoA ligase [GDP-forming] alpha-chain, mitochondrial, putative / succinyl-CoA synthetase, alpha chain, putative / SCS-alpha, putative identical to SP|P53586 Succinyl-CoA ligase [GDP-forming] alpha-chain, mitochondrial precursor (EC 6.2.1.4) (Succinyl-CoA synthetase, alpha chain) (SCS-alpha) {Arabidopsis thaliana}; strong similarity to SP|P13086 Succinyl-CoA ligase [GDP-forming] alpha-chain, mitochondrial precursor {Rattus norvegicus}; contains Pfam profiles PF00549: CoA-ligase, PF02629: CoA binding domain" 6 21 7 At5g08440 expressed protein 6 21 8 At5g08480 VQ motif-containing protein contains PF05678: VQ motif 6 21 9 At5g08620 "DEAD box RNA helicase (RH25) identical to RNA helicase [Arabidopsis thaliana] GI:3776023; contains Pfam profiles PF00270: DEAD/DEAH box helicase, PF00271: Helicase conserved C-terminal domain" 6 21 10 At5g08680 "ATP synthase beta chain, mitochondrial, putative strong similarity to SP|P83483 ATP synthase beta chain 1, mitochondrial precursor (EC 3.6.3.14) {Arabidopsis thaliana}, SP|P17614 ATP synthase beta chain, mitochondrial precursor (EC 3.6.3.14) {Nicotiana plumbaginifolia}; contains Pfam profiles PF00006: ATP synthase alpha/beta family nucleotide-binding domain, PF00306: ATP synthase ab C terminal, PF02874: ATP synthase alpha/beta family beta-barrel domain" 6 21 11 At5g09240 transcriptional coactivator p15 (PC4) family protein similar to SP|P11031 Activated RNA polymerase II transcriptional coactivator p15 precursor (PC4) (p14) (Single-stranded DNA binding protein p9) {Mus musculus}; contains Pfam profile PF02229: Transcriptional Coactivator p15 (PC4) 6 21 12 At5g09280 pectate lyase family protein similar to major pollen allergen Cup a 1 SP:Q9SCG9 from [Cupressus arizonica] 6 21 13 At5g12040 "carbon-nitrogen hydrolase family protein similar to Nit protein 2 [Homo sapiens] GI:9367116; contains Pfam profile PF00795: hydrolase, carbon-nitrogen family" 6 21 14 At5g12080 mechanosensitive ion channel domain-containing protein / MS ion channel domain-containing protein contains Pfam profile PF00924: Mechanosensitive ion channel 6 21 15 At5g12250 tubulin beta-6 chain (TUB6) nearly identical to SP|P29514 Tubulin beta-6 chain {Arabidopsis thaliana} 6 21 16 At5g12310 "zinc finger (C3HC4-type RING finger) family protein contains Pfam profile: PF00097 zinc finger, C3HC4 type (RING finger)" 6 21 17 At5g12460 fringe-related protein similarity to predicted proteins + similar to hypothetical protein GB:AAC23643 [Arabidopsis thaliana] + weak similarity to Fringe [Schistocerca gregaria](GI:6573138);Fringe encodes an extracellular protein that regulates Notch signalling. 6 21 18 At5g12860 "oxoglutarate/malate translocator, putative similar to 2-oxoglutarate/malate translocator precursor, spinach, SWISSPROT:Q41364" 6 21 19 At5g13050 5-formyltetrahydrofolate cyclo-ligase (5-FCL) nearly identical to gi:22087553 6 21 20 At5g13110 "glucose-6-phosphate 1-dehydrogenase, putative / G6PD, putative similar to SP|Q43839 Glucose-6-phosphate 1-dehydrogenase, chloroplast precursor (EC 1.1.1.49) (G6PD) {Solanum tuberosum}; contains Pfam profiles PF02781: Glucose-6-phosphate dehydrogenase C-terminal, PF00479: Glucose-6-phosphate dehydrogenase NAD binding domain" 6 21 21 At5g15850 zinc finger protein CONSTANS-LIKE 1 (COL1) identical to Zinc finger protein CONSTANS-LIKE 1 SP:O50055 from [Arabidopsis thaliana] 6 21 22 At5g15890 expressed protein 6 21 23 At5g16070 "chaperonin, putative similar to SWISS-PROT:P80317 T-complex protein 1, zeta subunit (TCP-1-zeta) [Mus musculus]; contains Pfam:PF00118 domain, TCP-1/cpn60 chaperonin family" 6 21 24 At5g16130 "40S ribosomal protein S7 (RPS7C) 40S ribosomal protein S7 homolog - Brassica oleracea, EMBL:AF144752" 6 21 25 At5g16290 "acetolactate synthase small subunit, putative similar to gi:5931761 from Nicotiana plumbaginifolia" 6 22 1 At5g16330 NC domain-containing protein contains Pfam profile PF04970: NC domain 6 22 2 At5g16490 p21-rho-binding domain-containing protein contains Pfam PF00786: P21-Rho-binding domain 6 22 3 At5g16540 "zinc finger (CCCH-type) family protein identical to zinc finger protein 3 [Arabidopsis thaliana] gi|4689376|gb|AAD27875; contains Pfam domain, PF00642: Zinc finger C-x8-C-x5-C-x3-H type (and similar)" 6 22 4 At5g19110 extracellular dermal glycoprotein-related / EDGP-related similar to extracellular dermal glycoprotein EDGP precursor [Daucus carota] GI:285741 6 22 5 At5g19170 "expressed protein predicted proteins, Arabidopsis thaliana contains Pfam profile PF03080: Arabidopsis proteins of unknown function" 6 22 6 At5g19330 "armadillo/beta-catenin repeat family protein / BTB/POZ domain-containing protein contains armadillo/beta-catenin-like repeats, Pfam:PF00514 and a BTB/POZ domain, Pfam:PF00651" 6 22 7 At5g19370 "rhodanese-like domain-containing protein / PPIC-type PPIASE domain-containing protein low similarity to MPT-synthase sulfurylase [Synechococcus sp. PCC 7942] GI:2950364; contains Pfam profiles PF00581: Rhodanese-like domain, PF00639: PPIC-type PPIASE domain; identical to cDNA peptidyl-prolyl cis-trans isomerase GI:2246379" 6 22 8 At5g19530 spermine/spermidine synthase family protein similar to SP|P09158 Spermidine synthase (EC 2.5.1.16) (Putrescine aminopropyltransferase) {Escherichia coli}; contains Pfam profile PF01564: Spermine/spermidine synthase 6 22 9 At5g19590 "expressed protein contains Pfam profile PF04398: Protein of unknown function, DUF538" 6 22 10 At5g19770 tubulin alpha-3/alpha-5 chain (TUA3) nearly identical to SP|P20363 Tubulin alpha-3/alpha-5 chain {Arabidopsis thaliana} 6 22 11 At5g19830 peptidyl-tRNA hydrolase family protein contains Pfam profile PF01195: peptidyl-tRNA hydrolase 6 22 12 At5g23150 PWWP domain-containing protein identical to cDNA putative transcription factor (HUA2) GI:4868119; contains Pfam profile PF00855: PWWP domain 6 22 13 At5g23210 serine carboxypeptidase S10 family protein similar to Serine carboxypeptidase II chains A and B (SP:P08819) (EC 3.4.16.6) [Triticum aestivum (Wheat)]; 6 22 14 At5g23350 "GRAM domain-containing protein / ABA-responsive protein-related contains similarity to ABA-responsive protein in barley (GI:4103635) [Hordeum vulgare] [J. Exp. Bot. 50, 727-728 (1999); contains Pfam PF02893: GRAM domain" 6 22 15 At5g23400 "disease resistance family protein / LRR family protein similar to disease resistance protein [Lycopersicon esculentum] gi|3894383|gb|AAC78591; contains leucine rich-repeat domain Pfam:PF00560, INTERPRO:IPR001611" 6 22 16 At5g23535 KOW domain-containing protein simlar to SP|P12876 50S ribosomal protein L24 (BL23) (12 kDa DNA-binding protein) (HPB12) {Bacillus subtilis}; contains Pfam profile PF00467: KOW motif 6 22 17 At5g23590 DNAJ heat shock N-terminal domain-containing protein low similarity to SP|P39101 CAJ1 protein Saccharomyces cerevisiae; contains Pfam profile PF00226 DnaJ domain 6 22 18 At5g23760 heavy-metal-associated domain-containing protein Pfam profile PF00403: Heavy-metal-associated domain 6 22 19 At5g23820 MD-2-related lipid recognition domain-containing protein / ML domain-containing protein contains Pfam profile PF02221: ML domain 6 22 20 At5g26670 "pectinacetylesterase, putative similar to pectinacetylesterase precursor GI:1431629 from [Vigna radiata]" 6 22 21 At5g26630 "MADS-box protein (AGL35) homeotic protein boi1AP3, Brassica oleracea, EMBL:U67453; contains Pfam profile PF00319: SRF-type transcription factor (DNA-binding and dimerisation domain)" 6 22 22 At5g26805 expressed protein 6 22 23 At5g26860 "Lon protease homolog 2, mitochondrial almost identical to Lon protease homolog 2 mitochondrial precursor SP:P93655, GI:1848290 from [Arabidopsis thaliana]" 6 22 24 At5g27050 MADS-box family protein contains similarity to hypothetical proteins of [Arabidopsis thaliana] 6 22 25 At5g27110 pentatricopeptide (PPR) repeat-containing protein contains INTERPRO:IPR002885 PPR repeats 6 23 1 At5g27310 expressed protein 6 23 2 At5g27370 hypothetical protein contains Pfam profile PF05078: Protein of unknown function (DUF679) 6 23 3 At5g35410 "CBL-interacting protein kinase 24 (CIPK24) / serine/threonine protein kinase (SOS2) identical to CBL-interacting protein kinase 24 [Arabidopsis thaliana] GP|14701910|gb|AAK72257, serine/threonine protein kinase SOS2 [Arabidopsis thaliana] GI:7453645" 6 23 4 At5g35480 expressed protein 6 23 5 At5g35620 eukaryotic translation initiation factor 4E 2 / eIF-4E2 / mRNA cap-binding protein 2 (EIF4E2) identical to SP|O04663 Eukaryotic translation initiation factor 4E (eIF-4E) (eIF4E) (mRNA cap-binding protein) (eIF-(iso)4F 25 kDa subunit) (eIF-(ISO)4F P28 subunit) (eIF4Eiso protein) {Arabidopsis thaliana} 6 23 6 At5g35670 "calmodulin-binding family protein contains IQ calmodulin-binding motif,