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U’Ren, J.M., F. Lutzoni, J. Miadlikowska, A. Laetsch,
and A.E. Arnold. 2012. Host and geographic structure of endophytic and
endolichenic fungi at a continental scale. American Journal of Botany,
in press.
Lawrence, D.P., B.M. Pryor, S.B. Kroken, and A.E.
Arnold. 2011. Interkingdom horizontal gene transfer of a hybrid
NRPS/PKS from
bacteria to filamentous Ascomycota. PLoS ONE, in press.
Higgins, K.L., A.E. Arnold, P. Coley, and T. Kursar.
2012. Communities of fungal endophytes in tropical forest grasses:
highly
diverse host- and habitat generalists characterized by strong spatial
structure. Fungal Ecology, in
press.
Molinar, E., N. Rios, C. Spadafora, A.E. Arnold, P.D.
Coley, T.A. Kursar, W.H. Gerwick, and L. Cubilla-Rios. 2012.
Coibanoles, a new
class of meroterpenoids produced by Pycnoporus sanguineus. Tetrahedron
Letters, in press.
Wijeratne, E.M.K., B.P. Bashyal, M.X. Liu, D.D. Rocha,
G.M. Kamal, B. Gunaherath, J.M. U’Ren, M.K. Gunatilaka, A.E. Arnold, L.
Whitesell, and A.A.L. Gunatilaka. 2012. Geopyxins A-E, ent-kaurane
diterpenoids from endolichenic fungal strains,
Geopyxis aff. majalis and Geopyxis sp. AZ0066: structure-activity
relationships of geopyxins and their
analogues. Journal of Natural Products, in press.
Wang, X.-N., B.P. Bashyal, E.M.K. Wijeratne, J.M. U’Ren,
M. Gunatilaka, A.E. Arnold, and A.A. Leslie Gunatilaka. 2011.
Smardaesidins
A-G, new isopimarane and 20-Nor-isopimarane
diterpenoids isolated from Smardaea sp.,
endophyte of the moss Ceratodon purpureus. Journal of Natural Products,
in press.
Moreno, E., T. Varughese, C. Spadafora, A.E. Arnold,
P.D. Coley, T.A. Kursar, W.H.
Gerwick, and L. Cubilla-Rios. 2011. Chemical
constituents of the new endophytic fungus
Mycosphaerella sp.
nov. and their antiparasitic activity. Natural
Products Communications
6: 835-840.
Epps, M.J. and A.E. Arnold. 2010.
Diversity, abundance, and community network structure in
sporocarp-associated beetle communities in the central Appalachian
Mountains. Mycologia 102: 785-802. pdf
Higgins, K.L., P.D. Coley, T.A. Kursar,
and A.E. Arnold. 2010. Culturing and direct PCR suggest prevalent host
generalism among fungal endophytes of tropical grasses. Mycologia
doi:10.3852/09-158. pdf
Hoffman, M. and A.E. Arnold. 2010.
Diverse bacteria inhabit living hyphae of phylogenetically diverse
fungal endophytes. Applied and Environmental Microbiology 76:
4063-4075. pdf
U'Ren, J.M., F. Lutzoni, J.
Miadlikowska, and A.E. Arnold. 2010. Community analysis reveals close
affinities between endophytic and endolichenic fungi in mosses and
lichens. Microbial Ecology 60: 340-353. pdf
Dalling, J.W., A.S. Davis, B.J. Schutte,
and A.E. Arnold. 2010. Seed survival in soil: interacting effects of
predation, dormancy, and the microbial community. Journal of Ecology
doi: 10.1111/j.1365-2745.2010.01739.x pdf
Arnold, A.E., L.J. Lamit, M. Bidartondo,
C. Gehring, and H.S. Callahan. 2010. Interwoven branches of the plant
and fungal trees of life. New Phytologist 185: 874-878. pdf
Peay, K., M. Bidartondo, and A.E.
Arnold. 2010. Not every fungus is everywhere: scaling to the
biogeography of fungal-plant interactions across roots, shoots, and
ecosystems. New Phytologist 185: 878-882. pdf
Caballero-George, C., J. Bolaños,
E. Ochoa, J.L. Carballo, J.A. Cruz, and A.E. Arnold. 2010. Protocol to
isolate sponge-associated fungi from tropical waters and an examination
of their cardioprotective potential. Current Trends in Biotechnology
and Pharmacy 4: 881-899.
Parrent, J.L., K. Peay, A.E. Arnold, L.
Comas, P. Avis, and A. Tuininga. 2010. Moving from pattern to process
in fungal symbioses: linking functional traits, community ecology, and
phylogenetics. New Phytologist 185: 882-886. pdf
Kithsiri Wijeratne, E.M., B.P. Bashyal,
M.K. Gunatilaka, A.E. Arnold, and A.A.L. Gunatilaka. 2010. Maximizing
chemical diversity of fungal endophytes: biogenetically related
heptaketides of the endolichenic fungus Corynespora sp. Journal of
Natural Products 73: 1156-1159. pdf
Arnold, A.E., J. Miadlikowska, K.L.
Higgins, S.D. Sarvate, P. Gugger, A. Way, V. Hofstetter, F. Kauff, and
F. Lutzoni. 2009. A phylogenetic estimation of trophic transition
networks for ascomycetous fungi: Are lichens cradles of symbiotrophic
fungal diversification? Systematic Biology 58: 283-297. pdf
Rodriguez, R., J. White, A.E. Arnold,
and R. Redman. 2009. Fungal endophytes: diversity and ecological roles.
New Phytologist 182: 314-330. pdf
U'Ren, J.M., J.W. Dalling, R.E. Gallery,
D.R. Maddison, E.C. Davis, C.M. Gibson, and A.E. Arnold. 2009.
Diversity and evolutionary origins of fungi associated with seeds of a
neotropical pioneer tree: a case study for analyzing fungal
environmental samples. Mycological Research 113: 432-449. pdf
Maddison, D.R. and A.E. Arnold. 2009. A
review of the Bembidion (Odontium) aenulum subgroup (Coleoptera:
Carabidae), with description of a new species. Zootaxa 2214: 45-61.
Reprint available on request.
Horton, T.R., A.E. Arnold, T.D. Bruns.
2008. FESIN workshops at ESA: the mycelial network grows. Mycorrhiza
19: 283-285. pdf
Jiménez-Romero, C., E.
Ortega-Barria, A.E. Arnold, and L. Cubilla-Rios. 2008. Activity against
Plasmodium falciparum of lactones isolated from the endophytic fungus
Xylaria sp. Pharmaceutical Biology 10-11: 1-4. pdf
Rojas, E.I., E.A. Herre, L.C.
Mejía, A.E. Arnold, P. Chaverri, and G.J. Samuels. 2008.
Endomelanconiopsis, a new anamorph genus in the Botryosphaeriaceae.
Mycologia 100: 760-775. pdf
Arnold, A.E. 2008. Endophytic fungi:
hidden components of tropical community ecology. Tropical Forest
Community Ecology. (S. Schnitzer and W. Carson, eds.) Blackwell
Scientific, Inc. pp. 254-271. pdf
Feldman, T.S., H. O’Brien, and A.E.
Arnold. 2008. Moth dispersal of mycoparasites and endophytes associated
with Claviceps paspali and the grass Paspalum (Poaceae). Microbial
Ecology 56: 742-750. pdf
Mejía, L.C., E.I. Rojas, Z.
Maynard, A.E. Arnold, S. Van Bael, G.J. Samuels, N. Robbins, and E. A.
Herre. 2008. Endophytic fungi as biocontrol agents of Theobroma cacao
pathogens. Biological Control 46: 4-14. pdf
Kluger, C., J.W. Dalling, R. E. Gallery,
E. Sanchez, C. Weeks-Galindo, and A.E. Arnold. 2008. Prevalent
host-generalism among fungi associated with seeds of four neotropical
pioneer species. Journal of Tropical Ecology 24: 351-354. pdf
Hoffman, M. and A.E. Arnold. 2008.
Geography and host identity interact to shape communities of endophytic
fungi in cupressaceous trees. Mycological Research 112: 331-344. pdf
Bruns, T., A.E. Arnold, and K. Hughes.
2008. Fungal networks made of humans: UNITE, FESIN, and frontiers in
fungal ecology. New Phytologist 177: 586-588. pdf
Kithsiri Wijeratne, E.M., P.A.
Paranagama, M.T. Marron, M.K. Gunatilaka, A.E. Arnold, and A.A.L.
Gunatilaka. 2008. Sesquiterpene quinines and related metabolites from
Phyllosticta spinarum, a fungal strain endophytic in Platycladus
orientalis in the Sonoran Desert. Journal of Natural Products 71:
218-222. pdf
Arnold, A.E. and F. Lutzoni. 2007.
Diversity and host range of foliar fungal endophytes: Are tropical
leaves biodiversity hotspots? Ecology 88: 541-549. pdf
Arnold, A.E. and B.M.J. Engelbrecht.
2007. Fungal endophytes nearly double minimum leaf conductance in
seedlings of a tropical tree. Journal of Tropical Ecology 23: 369-372. pdf
Arnold, A.E., D.A. Henk, R.L. Eells, F.
Lutzoni, and R. Vilgalys. 2007. Diversity and phylogenetic affinities
of foliar fungal endophytes in loblolly pine inferred by culturing and
environmental PCR. Mycologia 99: 185-206. pdf
Arnold, A.E. 2007. Understanding the
diversity of foliar fungal endophytes: progress, challenges, and
frontiers. Fungal Biology Reviews 21: 51-66. pdf
Gallery, R., J.W. Dalling, and A.E.
Arnold. 2007. Diversity, host affinity, and distribution of
seed-infecting fungi: A case study with neotropical Cecropia. Ecology
88: 582-588. pdf
Gallery, R.E., J.W. Dalling, B. Wolfe,
and A.E. Arnold. 2007 Role of seed-infecting fungi in the recruitment
limitation of neotropical pioneer species. Chapter 23 in Seed
dispersal: Theory and its application in a changing world. Eds. A.
Dennis, R. Green, E. Schupp and D. Westcott. CABI Press. pp. 479-498.
Reprint available on request.
Tsai, Y.J., K. Maloney, and A.E. Arnold.
2007.Abiotic and biotic factors influencing the distribution of
Pyrgulopsis thompsoni, the Huachuca springsnail. Journal of Aquatic
Ecology 22: 213-218. pdf
Agrawal, A.A., D.D. Ackerly, F. Adler,
A.E. Arnold, C. Cáceres, D.F. Doak, E. Post, P. Hudson, J.
Maron, K.A. Mooney, M. Power, D. Schemske, J.J. Stachowicz, S.Y.
Strauss, M.G. Turner, and E. Werner. 2007. Filling key gaps in
population and community ecology. Frontiers in Ecology and the
Environment 5: 145-152. pdf;
web panels here.
Agrawal, A.A., D.A. Ackerly, F. Adler,
A.E. Arnold, C. Cáceres, D.F. Doak, E. Post, P. Hudson, J.
Maron, K.A. Mooney, M. Power, D. Schemske, J.J. Stachowicz, S.Y.
Strauss, M.G. Turner, and E. Werner.2007. In support of observational
studies (reply). (Peer-reviewed letter). Frontiers in Ecology and the
Environment 5: 294-295. pdf
Higgins, K. L., Arnold, A. E.,
Miadlikowska, J., Sarvate, S. D., and Lutzoni, F. 2007. Phylogenetic
relationships, host affinity, and geographic structure of boreal and
arctic endophytes from three major plant lineages. Molecular
Phylogenetics and Evolution 42: 543-555. pdf
Paranagama, P.A., E.M.K. Wijeratne, M.K.
Gunatilaka, A.E. Arnold, and A.A.L. Gunatilaka. 2007. Bioactive and
other naphthopyrans from Corynespora sp. occurring in Usnea cavernosa:
first report of metabolites of an endolichenic fungus. Journal of
Natural Products 70: 1700-1705. pdf
James, T. Y., F. Kauff, C. Schoch, P.B.
Matheny, V. Hofstetter, C. Cox, G. Celio, C. Gueidan, E. Fraker, J.
Miadlikowska, H.T. Lumbsch, A. Rauhut, V. Reeb, A.E. Arnold, A. Amtoft,
J.E. Stajich, K. Hosaka, G.-H. Sung, D. Johnson, B. O’Rourke, M.
Crockett, M. Binder, J.M. Curtis, J.C. Slot, Z. Wang, A.W. Wilson, A.
Schüßler, J.E. Longcore, K. O’Donnell, S. Mozley-Standridge,
D. Porter, P.M. Letcher, M.J. Powell, J.W. Taylor, M.M. White, G.W.
Griffith, D.R. Davies, R.A. Humber, J.B. Morton, J. Sugiyama, A.Y.
Rossman, J.D. Rogers, D.H. Pfister, D. Hewitt, K. Hansen, S. Hambleton,
R.A. Shoemaker, J. Kohlmeyer, B. Volkmann-Kohlmeyer, R.A. Spotts, M.
Serdani, P.W. Crous, K.W. Hughes, K. Matsuura, E. Langer, G. Langer,
W.A. Untereiner, R. Lücking, B. Büdel, D.M. Geiser, A.
Aptroot, P. Diederich, I. Schmitt, M. Schultz, R. Yahr, D. Hibbett, F.
Lutzoni, D. McLaughlin, J. Spatafora, and R. Vilgalys. 2006.
Reconstructing the early evolution of fungi using a six-gene phylogeny.
Nature 443: 818-822. pdf
Spatafora, J.W., C. Schoch, D. Johnson,
G-H. Sung, K. Hosaka, B. O’Rourke, M. Serdani, R. Spotts, F. Lutzoni,
V. Hofstetter, E. Fraker, C. Gueidan, J. Miadlikowska, V. Reeb, M.
Saunders, R. Yahr, A.E. Arnold, T. Lumbsch, and R. Lücking. 2006.
A five-gene phylogenetic analysis of the Pezizomycotina. Mycologia 98:
1018-1028. pdf
Miadlikowska, J., F. Kauff, V.
Hofstetter, E. Fraker, M. Grube, V. Reeb, G. Hestmark, B. Hodgkinson,
M. Kukwa, M.G. Otalora, A. Rauhut, C. Scheidegger, E. Timdal, S.
Stenroos, I. Brodo, D. Ertz, P. Diederich, R. Lücking, J.C.
Lendemer, E. Tripp, R. Yahr, P. May, G. Perlmutter, D.M. Hillis, W.R.
Buck, C. Gueidan, A.E. Arnold, C. Robertson, J. Hafellner, and F.
Lutzoni. 2006. New insights from nuclear ribosomal and protein coding
genes into classification and evolution of the Lecanoromycetes
(Pezizomycotina, Ascomycota). Mycologia 98: 1088-1103. pdf
Arnold, A.E. and L.C. Lewis. 2005.
Evolution of fungal endophytes, and their roles against insects.
Ecological and Evolutionary Advances in Insect-Fungus Associations (F.
Vega and M. Blackwell, eds.). Oxford University Press, Oxford.
pp. 74-96. pdf
Lutzoni, F., F. Kauff, C. Cox, D.
McLaughlin, G. Celio, B. Dentinger, M. Padamsee, D. Hibbett, T.Y.
James, E. Baloch, M. Grube, V. Reeb, V. Hofstetter, C. Schoch, A.E.
Arnold, J. Miadlikowska, J. Spatafora, D. Johnson, S. Hambleton, M.
Crockett, R. Shoemaker, G.-H. Sung, R. Lücking, T. Lumbsch, K.
O’Donnell, M. Binder, P. Diederich, D. Ertz, C. Gueidan, K. Hansen, K.
Hosaka, Y.-W. Lim, B. Matheny, H. Nishida, D. Pfister, J. Rogers, A.
Rossman, I. Schmitt, H. Sipman, J. Stone, J. Sugiyama, R. Yahr, and R
Vilgalys. 2004. Assembling the fungal tree of life: progress,
classification, and the evolution of subcellular traits. American
Journal of Botany 91: 1446-1480. pdf
Arnold, A.E., L. Mejía, D. Kyllo,
E. Rojas, Z. Maynard and E.A. Herre. 2003. Fungal endophytes limit
pathogen damage in a tropical tree. Proceedings of the National Academy
of Sciences USA 100: 15649-15654. pdf
Arnold, A.E. and E.A. Herre.
2003. Canopy cover and leaf age affect colonization by tropical
fungal endophytes: Ecological pattern and process in Theobroma cacao
(Malvaceae). Mycologia 95: 388-398. pdf
Arnold, A.E. and N.M. Asquith. 2002.
Herbivory in a fragmented tropical forest: patterns from islands
at Lago Gatún, Panamá. Biodiversity and Conservation
11: 1663-1680. pdf
Arnold, A.E., Z. Maynard and G. Gilbert.
2001. Fungal endophytes in dicotyledonous neotropical trees:
patterns of abundance and diversity. Mycological Research 105:
1502-1507. pdf
Arnold, A.E., Z. Maynard, G. Gilbert,
P.D. Coley and T.A. Kursar. 2000. Are tropical fungal endophytes
hyperdiverse? Ecology Letters 3: 267-274. pdf
Asquith, N.M., J. Terborgh, A.E. Arnold
and M. Riveros-C. 1999. The fruits the agouti ate: Hymenaea
courbaril seed fate when its disperser is absent. Evidence from
Lago Guri, Venezuela. Journal of Tropical Ecology
15: 229-235. pdf
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