Sharpton TJ, Stajich JE, Rounsley SD, Gardner MJ, Wortman JR, Jordar VS, Maiti R, Kodira CD, Neafsey DE, Zeng Q, Hung CY, McMahan C, Muszewska A, Grynberg M, Mandel MA, Kellner EM, Barker BM, Galgiani. Aug 2009. Comparative genomic analyses of the human fungal pathogens Coccidioides and their relatives. Genome Res,2009 Aug 28;

Coleman JJ, Rounsley SD, Rodriguez-Carres M, Kuo A, Wasmann CC, Grimwood J, Schmutz J, Taga M, White GJ, Zhou S, Schwartz DC, Freitag M, Ma LJ, Danchin EG, Henrissat B, Coutinho PM, Nelson DR, Straney. Aug 2009. The genome of Nectria haematococca: contribution of supernumerary chromosomes to gene expansion. PLoS Genet, 5:e1000618

Rounsley, S, Marri, PR, Yu, Y, He, R, Sisneros, N, Goicoechea, JL, Lee, SJ, Angelova, A, Kudrna, D, Luo, M, Affourtit, J, Desany, B, Knight, J, Niazi, F, Egholm, F and Wing, RA. Mar 2009. de novo Next Generation Sequencing of Plant Genomes. Rice, 2(1):35-43

Fan, C. Zhang, Y. Yu, Y., Rounsley, S. Long, M. and Wing, R.A.. Sep 2008. The Subtelomere of Oryza sativa Chromosome 3 Short Arm as a Hot Bed of New Gene Origination in Rice. Molecular Plant, 1:839-850

Bruggmann R Bharti AK Gundlach H Lai J Young S Pontaroli AC Wei F Haberer G Fuks G Du C Raymond C Estep MC Liu R Bennetzen JL Chan AP Rabinowicz PD Quackenbush J Barbazuk WB Wing RA Birren B Nusbaum C. Oct 2006. Uneven chromosome contraction and expansion in the maize genome. Genome Res, 16:1241-51

Jackson S Rounsley S Purugganan M. May 2006. Comparative sequencing of plant genomes: choices to make. Plant Cell, 18:1100-4

Zody MC Garber M Sharpe T Young SK Rowen L O'Neill K Whittaker CA Kamal M Chang JL Cuomo CA Dewar K FitzGerald MG Kodira CD Madan A Qin S Yang X Abbasi N Abouelleil A Arachchi HM Baradarani L Birditt. Mar 2006. Analysis of the DNA sequence and duplication history of human chromosome 15. Nature, 440:671-5

Haberer G Young S Bharti AK Gundlach H Raymond C Fuks G Butler E Wing RA Rounsley S Birren B Nusbaum C Mayer KF Messing J. Dec 2005. Structure and architecture of the maize genome. Plant Physiol, 139:1612-24

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