Dr. Carol (Cari) Soderlund
Research Associate Professor

311 Keating Bldg
Phone: (520) 626-9600
Email: cari@agcol.arizona.edu

 

Visit these web-sites to learn more about Dr. Soderlund and her research

 

   
Background and Interests
 
Carol Soderlund received a Ph.D. in computer Science from New Mexico State University. She also has a Master's degree in Systems Science from Louisiana Sate University and a Bachelor's degree in Psychology from Western Michigan State University.  Her research interests include software for physical mapping, comparative genomics and host-pathogen interactions.  Dr. Soderlund is currently the head of AGCoL (Arizona Genomics Computational Laboratory).  

 
Publications
 

Soderlund C, Johnson E, Bomhoff M, Descour A. Aug 2009. PAVE: program for assembling and viewing ESTs. BMC Genomics, 10:400

Nelson W, Soderlund C. Apr 2009. Integrating sequence with FPC fingerprint maps. Nucleic Acids Res, 37:e36

Nelson W, Luo M, Ma J, Estep M, Estill J, He R, Talag J, Sisneros N, Kudrna D, Kim H, Ammiraju JS, Collura K, Bharti AK, Messing J, Wing RA, SanMiguel P, Bennetzen JL, Soderlund C. Dec 2008. Methylation-sensitive linking libraries enhance gene-enriched sequencing of complex genomes and map DNA methylation domains. BMC Genomics, 9:621

Kim H, Hurwitz B, Yu Y, Collura K, Gill N, SanMiguel P, Mullikin JC, Maher C, Nelson W, Wissotski M, Braidotti M, Kudrna D, Goicoechea JL, Stein L, Ware D, Jackson SA, Soderlund C, Wing RA. Jan 2008. Construction, alignment and analysis of twelve framework physical maps that represent the ten genome types of the genus Oryza. Genome Biol, 9:R45

Wei F, Coe E, Nelson W, Bharti AK, Engler F, Butler E, Kim H, Goicoechea JL, Chen M, Lee S, Fuks G, Sanchez-Villeda H, Schroeder S, Fang Z, McMullen M, Davis G, Bowers JE, Paterson AH, Schaeffer M, Ga. Jul 2007. Physical and genetic structure of the maize genome reflects its complex evolutionary history. PLoS Genet, 3:e123

Gowda M, Venu RC, Li H, Jantasuriyarat C, Chen S, Bellizzi M, Pampanwar V, Kim H, Dean RA, Stahlberg E, Wing R, Soderlund C, Wang GL. May 2007. Magnaporthe grisea infection triggers RNA variation and antisense transcript expression in rice. Plant Physiol, 144:524-33

Kim H, San Miguel P, Nelson W, Collura K, Wissotski M, Walling JG, Kim JP, Jackson SA, Soderlund C, Wing RA. May 2007. Comparative physical mapping between Oryza sativa (AA genome type) and O. punctata (BB genome type). Genetics, 176:379-90

Gowda M, Venu RC, Jia Y, Stahlberg E, Pampanwar V, Soderlund C, Wang GL. Jan 2007. Use of robust-long serial analysis of gene expression to identify novel fungal and plant genes involved in host-pathogen interactions. Methods Mol Biol, 354:131-44

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