Dr. Carol (Cari) Soderlund
Research Associate Professor

Marley Building, Room 541D
Phone: (520) 626-9600
Email: cari@agcol.arizona.edu

 

Visit these web-sites to learn more about Dr. Soderlund and her research

 

   
Background and Interests
 
Carol Soderlund received a Ph.D. in computer Science from New Mexico State University. She also has a Master's degree in Systems Science from Louisiana Sate University and a Bachelor's degree in Psychology from Western Michigan State University.  Her research interests include software for physical mapping, comparative genomics and host-pathogen interactions.  Dr. Soderlund is currently the head of AGCoL (Arizona Genomics Computational Laboratory).  

 
Publications
 

Kim H, Hurwitz B, Yu Y, Collura K, Gill N, SanMiguel P, Mullikin JC, Maher C, Nelson W, Wissotski M, Braidotti M, Kudrna D, Goicoechea JL, Stein L, Ware D, Jackson SA, Soderlund C, Wing RA. Jan 2008. Construction, alignment and analysis of twelve framework physical maps that represent the ten genome types of the genus Oryza. Genome Biol, 9:R45

Wei F, Coe E, Nelson W, Bharti AK, Engler F, Butler E, Kim H, Goicoechea JL, Chen M, Lee S, Fuks G, Sanchez-Villeda H, Schroeder S, Fang Z, McMullen M, Davis G, Bowers JE, Paterson AH, Schaeffer M, Ga. Jul 2007. Physical and genetic structure of the maize genome reflects its complex evolutionary history. PLoS Genet, 3:e123

Gowda M, Venu RC, Li H, Jantasuriyarat C, Chen S, Bellizzi M, Pampanwar V, Kim H, Dean RA, Stahlberg E, Wing R, Soderlund C, Wang GL. May 2007. Magnaporthe grisea infection triggers RNA variation and antisense transcript expression in rice. Plant Physiol, 144:524-33

Kim H, San Miguel P, Nelson W, Collura K, Wissotski M, Walling JG, Kim JP, Jackson SA, Soderlund C, Wing RA. May 2007. Comparative physical mapping between Oryza sativa (AA genome type) and O. punctata (BB genome type). Genetics, 176:379-90

Gowda M, Venu RC, Jia Y, Stahlberg E, Pampanwar V, Soderlund C, Wang GL. Jan 2007. Use of robust-long serial analysis of gene expression to identify novel fungal and plant genes involved in host-pathogen interactions. Methods Mol Biol, 354:131-44

Soderlund C Haller K Pampanwar V Ebbole D Farman M Orbach MJ Wang GL Wing R Xu JR Brown D Mitchell T Dean R. Oct 2006. MGOS: A resource for studying Magnaporthe grisea and Oryza sativa interactions. Mol Plant Microbe Interact, 19:1055-61

Nelson WM Dvorak J Luo MC Messing J Wing RA Soderlund C. Sep 2006. Efficacy of clone fingerprinting methodologies. Genomics,2006 Sep 29;

Soderlund C Nelson W Shoemaker A Paterson A. Sep 2006. SyMAP: A system for discovering and viewing syntenic regions of FPC maps. Genome Res, 16:1159-68

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