Dr. Carol (Cari) Soderlund
Research Associate Professor

311 Keating Bldg
Phone: (520) 626-9600
Email: cari@agcol.arizona.edu

 

Visit these web-sites to learn more about Dr. Soderlund and her research

 

   
Background and Interests
 
Carol Soderlund received a Ph.D. in computer Science from New Mexico State University. She also has a Master's degree in Systems Science from Louisiana Sate University and a Bachelor's degree in Psychology from Western Michigan State University.  Her research interests include software for physical mapping, comparative genomics and host-pathogen interactions.  Dr. Soderlund is currently the head of AGCoL (Arizona Genomics Computational Laboratory).  

 
Publications
 

Buell CR, Yuan Q, Ouyang S, Liu J, Zhu W, Wang A, Maiti R, Haas B, Wortman J, Pertea M, Jones KM, Kim M, Overton L, Tsitrin T, Fadrosh D, Bera J, Weaver B, Jin S, Johri S, Reardon M, Webb K, Hill J, M. Sep 2005. Sequence, annotation, and analysis of synteny between rice chromosome 3 and diverged grass species. Genome Res, 15:1284-91

Wing RA, Ammiraju JS, Luo M, Kim H, Yu Y, Kudrna D, Goicoechea JL, Wang W, Nelson W, Rao K, Brar D, Mackill DJ, Han B, Soderlund C, Stein L, SanMiguel P, Jackson S. Sep 2005. The oryza map alignment project: the golden path to unlocking the genetic potential of wild rice species. Plant Mol Biol, 59:53-62

Pampanwar V, Engler F, Hatfield J, Blundy S, Gupta G, Soderlund C. May 2005. FPC Web tools for rice, maize, and distribution. Plant Physiol, 138:116-26

Jantasuriyarat C, Gowda M, Haller K, Hatfield J, Lu G, Stahlberg E, Zhou B, Li H, Kim H, Yu Y, Dean RA, Wing RA, Soderlund C, Wang GL. May 2005. Large-scale identification of expressed sequence tags involved in rice and rice blast fungus interaction. Plant Physiol, 138:105-15

Donofrio N, Rajagopalon R, Brown D, Diener S, Windham D, Nolin S, Floyd A, Mitchell T, Galadima N, Tucker S, Orbach MJ, Patel G, Farman M, Pampanwar V, Soderlund C, Lee YH, Dean RA. Apr 2005. 'PACLIMS': a component LIM system for high-throughput functional genomic analysis. BMC Bioinformatics, 6:94

Messing J, Bharti AK, Karlowski WM, Gundlach H, Kim HR, Yu Y, Wei F, Fuks G, Soderlund CA, Mayer KF, Wing RA. Sep 2004. Sequence composition and genome organization of maize. Proc Natl Acad Sci U S A,2004 Sep 23;

Gardiner J, Schroeder S, Polacco ML, Sanchez-Villeda H, Fang Z, Morgante M, Landewe T, Fengler K, Useche F, Hanafey M, Tingey S, Chou H, Wing R, Soderlund C, Coe EH Jr. Apr 2004. Anchoring 9,371 maize expressed sequence tagged unigenes to the bacterial artificial chromosome contig map by two-dimensional overgo hybridization. Plant Physiol, 134:1317-26

Engler FW, Hatfield J, Nelson W, Soderlund CA. Sep 2003. Locating sequence on FPC maps and selecting a minimal tiling path. Genome Res, 13:2152-63

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