Kartchner Caverns Microbial Observatory

Computer Resources & Tips

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• Jargon - Words, definitions, and terminology


• HPC / Unix - How to use Unix and the UA High Performance Computing resources

Metagenomic Analysis Tools

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• BioRuby & BioPerl - Script modules for the Ruby and Perl languages that aid in metagenomic analysis


• BLAST - Basic Local Alignment Search Tool


• Consed - Visual Genome Inspector


• Gene Annotation - A quick introduction to Gene Annotation


• MEGAN - Metagenomics Visualization Tool


• Newbler - Sequence Assembly Tool


• Scripts - Useful scripts to aid in metagenomics processing